Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1260 and Ac3H11_1261 are separated by 203 nucleotides Ac3H11_1261 and Ac3H11_1262 are separated by 53 nucleotides Ac3H11_1262 and Ac3H11_1263 are separated by 148 nucleotides
Ac3H11_1260 - Beta-lactamase class C family protein, at 78,640 to 79,749
_1260
Ac3H11_1261 - Sensory histidine kinase QseC, at 79,953 to 81,308
_1261
Ac3H11_1262 - probable two-component system response regulator, at 81,362 to 82,018
_1262
Ac3H11_1263 - Response regulator receiver:Transcriptional regulatory protein, C- terminal, at 82,167 to 82,841
_1263
Position (kb) 79
80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2 at 79.193 kb on + strand, within Ac3H11_1260 at 79.193 kb on + strand, within Ac3H11_1260 at 79.194 kb on - strand, within Ac3H11_1260 at 79.194 kb on - strand, within Ac3H11_1260 at 79.194 kb on - strand, within Ac3H11_1260 at 79.194 kb on - strand, within Ac3H11_1260 at 79.194 kb on - strand, within Ac3H11_1260 at 79.208 kb on + strand, within Ac3H11_1260 at 79.209 kb on - strand, within Ac3H11_1260 at 79.418 kb on + strand, within Ac3H11_1260 at 79.418 kb on + strand, within Ac3H11_1260 at 79.831 kb on - strand at 80.142 kb on + strand, within Ac3H11_1261 at 80.142 kb on + strand, within Ac3H11_1261 at 80.142 kb on + strand, within Ac3H11_1261 at 80.143 kb on - strand, within Ac3H11_1261 at 80.946 kb on + strand, within Ac3H11_1261 at 80.946 kb on + strand, within Ac3H11_1261 at 80.946 kb on + strand, within Ac3H11_1261 at 80.947 kb on - strand, within Ac3H11_1261 at 81.726 kb on + strand, within Ac3H11_1262 at 81.727 kb on - strand, within Ac3H11_1262 at 81.727 kb on - strand, within Ac3H11_1262 at 82.093 kb on + strand at 82.094 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 79,193 + Ac3H11_1260 0.50 -0.3 79,193 + Ac3H11_1260 0.50 +0.8 79,194 - Ac3H11_1260 0.50 -0.1 79,194 - Ac3H11_1260 0.50 +0.0 79,194 - Ac3H11_1260 0.50 -0.3 79,194 - Ac3H11_1260 0.50 -0.7 79,194 - Ac3H11_1260 0.50 -0.7 79,208 + Ac3H11_1260 0.51 -1.8 79,209 - Ac3H11_1260 0.51 +0.1 79,418 + Ac3H11_1260 0.70 +0.0 79,418 + Ac3H11_1260 0.70 -0.1 79,831 - +1.4 80,142 + Ac3H11_1261 0.14 +0.1 80,142 + Ac3H11_1261 0.14 -0.6 80,142 + Ac3H11_1261 0.14 +0.3 80,143 - Ac3H11_1261 0.14 +0.6 80,946 + Ac3H11_1261 0.73 +1.5 80,946 + Ac3H11_1261 0.73 +0.4 80,946 + Ac3H11_1261 0.73 +1.5 80,947 - Ac3H11_1261 0.73 +0.2 81,726 + Ac3H11_1262 0.55 +2.0 81,727 - Ac3H11_1262 0.56 +0.2 81,727 - Ac3H11_1262 0.56 -0.1 82,093 + -0.7 82,094 - -0.4
Or see this region's nucleotide sequence