Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_28215 and AO353_28220 are separated by 272 nucleotides AO353_28220 and AO353_28225 are separated by 57 nucleotides
AO353_28215: AO353_28215 - 4-aminobutyrate aminotransferase, at 6,149,266 to 6,150,558
_28215
AO353_28220: AO353_28220 - hydroxyacid dehydrogenase, at 6,150,831 to 6,151,757
_28220
AO353_28225: AO353_28225 - tartrate dehydrogenase, at 6,151,815 to 6,152,894
_28225
Position (kb)
6150
6151
6152 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6150.083 kb on + strand, within AO353_28215 at 6150.084 kb on - strand, within AO353_28215 at 6150.084 kb on - strand, within AO353_28215 at 6150.171 kb on + strand, within AO353_28215 at 6150.172 kb on - strand, within AO353_28215 at 6150.172 kb on - strand, within AO353_28215 at 6150.172 kb on - strand, within AO353_28215 at 6150.222 kb on + strand, within AO353_28215 at 6150.240 kb on - strand, within AO353_28215 at 6150.240 kb on - strand, within AO353_28215 at 6150.290 kb on + strand, within AO353_28215 at 6150.291 kb on - strand, within AO353_28215 at 6150.297 kb on + strand, within AO353_28215 at 6150.297 kb on + strand, within AO353_28215 at 6150.297 kb on + strand, within AO353_28215 at 6150.297 kb on + strand, within AO353_28215 at 6150.297 kb on + strand, within AO353_28215 at 6150.299 kb on + strand, within AO353_28215 at 6150.299 kb on + strand, within AO353_28215 at 6150.299 kb on + strand, within AO353_28215 at 6150.299 kb on + strand, within AO353_28215 at 6150.635 kb on + strand at 6150.635 kb on + strand at 6150.636 kb on - strand at 6150.636 kb on - strand at 6150.733 kb on + strand at 6150.733 kb on + strand at 6150.734 kb on - strand at 6150.843 kb on + strand at 6150.843 kb on + strand at 6150.843 kb on + strand at 6150.844 kb on - strand at 6150.844 kb on - strand at 6150.844 kb on - strand at 6150.845 kb on + strand at 6150.845 kb on + strand at 6150.845 kb on + strand at 6150.846 kb on - strand at 6150.846 kb on - strand at 6150.846 kb on - strand at 6150.846 kb on - strand at 6150.846 kb on - strand at 6150.954 kb on + strand, within AO353_28220 at 6150.954 kb on + strand, within AO353_28220 at 6150.954 kb on + strand, within AO353_28220 at 6150.954 kb on + strand, within AO353_28220 at 6150.954 kb on + strand, within AO353_28220 at 6150.955 kb on - strand, within AO353_28220 at 6150.958 kb on + strand, within AO353_28220 at 6150.959 kb on - strand, within AO353_28220 at 6150.995 kb on - strand, within AO353_28220 at 6150.995 kb on - strand, within AO353_28220 at 6150.995 kb on - strand, within AO353_28220 at 6151.123 kb on - strand, within AO353_28220 at 6151.123 kb on - strand, within AO353_28220 at 6151.351 kb on - strand, within AO353_28220 at 6151.408 kb on + strand, within AO353_28220 at 6151.576 kb on + strand, within AO353_28220 at 6151.576 kb on + strand, within AO353_28220 at 6151.577 kb on - strand, within AO353_28220 at 6151.577 kb on - strand, within AO353_28220 at 6151.694 kb on + strand at 6151.705 kb on - strand at 6151.759 kb on + strand at 6151.759 kb on + strand at 6151.759 kb on + strand at 6152.026 kb on + strand, within AO353_28225 at 6152.026 kb on + strand, within AO353_28225 at 6152.026 kb on + strand, within AO353_28225 at 6152.026 kb on + strand, within AO353_28225 at 6152.027 kb on - strand, within AO353_28225 at 6152.027 kb on - strand, within AO353_28225 at 6152.027 kb on - strand, within AO353_28225 at 6152.027 kb on - strand, within AO353_28225 at 6152.027 kb on - strand, within AO353_28225 at 6152.294 kb on - strand, within AO353_28225 at 6152.476 kb on + strand, within AO353_28225 at 6152.476 kb on + strand, within AO353_28225 at 6152.476 kb on + strand, within AO353_28225 at 6152.477 kb on - strand, within AO353_28225 at 6152.477 kb on - strand, within AO353_28225 at 6152.587 kb on + strand, within AO353_28225 at 6152.678 kb on - strand, within AO353_28225 at 6152.678 kb on - strand, within AO353_28225 at 6152.743 kb on + strand, within AO353_28225 at 6152.744 kb on - strand, within AO353_28225 at 6152.744 kb on - strand, within AO353_28225 at 6152.744 kb on - strand, within AO353_28225 at 6152.747 kb on - strand, within AO353_28225
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 6,150,083 + AO353_28215 0.63 -1.9 6,150,084 - AO353_28215 0.63 +1.1 6,150,084 - AO353_28215 0.63 +0.3 6,150,171 + AO353_28215 0.70 +1.6 6,150,172 - AO353_28215 0.70 -1.1 6,150,172 - AO353_28215 0.70 +1.6 6,150,172 - AO353_28215 0.70 +0.6 6,150,222 + AO353_28215 0.74 -1.1 6,150,240 - AO353_28215 0.75 -0.0 6,150,240 - AO353_28215 0.75 -0.4 6,150,290 + AO353_28215 0.79 +0.3 6,150,291 - AO353_28215 0.79 +1.7 6,150,297 + AO353_28215 0.80 +1.0 6,150,297 + AO353_28215 0.80 +0.8 6,150,297 + AO353_28215 0.80 +1.6 6,150,297 + AO353_28215 0.80 -0.1 6,150,297 + AO353_28215 0.80 -0.2 6,150,299 + AO353_28215 0.80 +0.8 6,150,299 + AO353_28215 0.80 -1.2 6,150,299 + AO353_28215 0.80 +0.7 6,150,299 + AO353_28215 0.80 -0.9 6,150,635 + +0.9 6,150,635 + -2.4 6,150,636 - -0.7 6,150,636 - -0.4 6,150,733 + -1.1 6,150,733 + +0.7 6,150,734 - +0.6 6,150,843 + -1.7 6,150,843 + +0.8 6,150,843 + +0.8 6,150,844 - +2.1 6,150,844 - -1.9 6,150,844 - +1.6 6,150,845 + -0.2 6,150,845 + -2.0 6,150,845 + -1.2 6,150,846 - +0.3 6,150,846 - -0.4 6,150,846 - +0.7 6,150,846 - -1.9 6,150,846 - +1.5 6,150,954 + AO353_28220 0.13 +0.8 6,150,954 + AO353_28220 0.13 -1.5 6,150,954 + AO353_28220 0.13 -0.6 6,150,954 + AO353_28220 0.13 -1.5 6,150,954 + AO353_28220 0.13 -1.7 6,150,955 - AO353_28220 0.13 +0.1 6,150,958 + AO353_28220 0.14 -0.7 6,150,959 - AO353_28220 0.14 -0.9 6,150,995 - AO353_28220 0.18 +0.2 6,150,995 - AO353_28220 0.18 -2.7 6,150,995 - AO353_28220 0.18 +0.3 6,151,123 - AO353_28220 0.31 +0.2 6,151,123 - AO353_28220 0.31 -0.7 6,151,351 - AO353_28220 0.56 +0.2 6,151,408 + AO353_28220 0.62 -0.2 6,151,576 + AO353_28220 0.80 +1.1 6,151,576 + AO353_28220 0.80 -1.2 6,151,577 - AO353_28220 0.80 +0.6 6,151,577 - AO353_28220 0.80 +2.8 6,151,694 + +0.5 6,151,705 - +0.9 6,151,759 + +0.4 6,151,759 + +0.3 6,151,759 + -1.7 6,152,026 + AO353_28225 0.20 -2.7 6,152,026 + AO353_28225 0.20 -1.9 6,152,026 + AO353_28225 0.20 -1.1 6,152,026 + AO353_28225 0.20 +1.0 6,152,027 - AO353_28225 0.20 +0.4 6,152,027 - AO353_28225 0.20 +0.6 6,152,027 - AO353_28225 0.20 -1.9 6,152,027 - AO353_28225 0.20 +0.6 6,152,027 - AO353_28225 0.20 +0.1 6,152,294 - AO353_28225 0.44 -0.8 6,152,476 + AO353_28225 0.61 -0.9 6,152,476 + AO353_28225 0.61 -1.0 6,152,476 + AO353_28225 0.61 -1.4 6,152,477 - AO353_28225 0.61 -2.7 6,152,477 - AO353_28225 0.61 +2.3 6,152,587 + AO353_28225 0.71 -1.0 6,152,678 - AO353_28225 0.80 -2.4 6,152,678 - AO353_28225 0.80 -0.2 6,152,743 + AO353_28225 0.86 -1.4 6,152,744 - AO353_28225 0.86 +0.3 6,152,744 - AO353_28225 0.86 -0.6 6,152,744 - AO353_28225 0.86 -1.4 6,152,747 - AO353_28225 0.86 -0.2
Or see this region's nucleotide sequence