Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26075 and AO353_26080 are separated by 138 nucleotides AO353_26080 and AO353_26085 are separated by 120 nucleotides
AO353_26075: AO353_26075 - FAD-binding protein, at 5,741,024 to 5,742,712
_26075
AO353_26080: AO353_26080 - hypothetical protein, at 5,742,851 to 5,743,060
_26080
AO353_26085: AO353_26085 - hypothetical protein, at 5,743,181 to 5,744,263
_26085
Position (kb) 5742
5743
5744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5741.951 kb on + strand, within AO353_26075 at 5741.951 kb on + strand, within AO353_26075 at 5741.952 kb on - strand, within AO353_26075 at 5742.021 kb on + strand, within AO353_26075 at 5742.022 kb on - strand, within AO353_26075 at 5742.054 kb on - strand, within AO353_26075 at 5742.054 kb on - strand, within AO353_26075 at 5742.067 kb on - strand, within AO353_26075 at 5742.070 kb on - strand, within AO353_26075 at 5742.152 kb on + strand, within AO353_26075 at 5742.169 kb on + strand, within AO353_26075 at 5742.169 kb on + strand, within AO353_26075 at 5742.172 kb on + strand, within AO353_26075 at 5742.173 kb on - strand, within AO353_26075 at 5742.173 kb on - strand, within AO353_26075 at 5742.320 kb on + strand, within AO353_26075 at 5742.321 kb on - strand, within AO353_26075 at 5742.355 kb on + strand, within AO353_26075 at 5742.508 kb on + strand, within AO353_26075 at 5742.508 kb on + strand, within AO353_26075 at 5742.509 kb on - strand, within AO353_26075 at 5742.512 kb on + strand, within AO353_26075 at 5742.513 kb on - strand, within AO353_26075 at 5742.524 kb on + strand, within AO353_26075 at 5742.525 kb on - strand, within AO353_26075 at 5742.543 kb on + strand, within AO353_26075 at 5742.543 kb on + strand, within AO353_26075 at 5742.543 kb on + strand, within AO353_26075 at 5742.552 kb on + strand at 5742.552 kb on + strand at 5742.553 kb on - strand at 5742.555 kb on + strand at 5742.556 kb on - strand at 5742.593 kb on + strand at 5742.605 kb on - strand at 5742.616 kb on - strand at 5742.688 kb on - strand at 5742.691 kb on - strand at 5742.830 kb on - strand at 5742.994 kb on - strand, within AO353_26080 at 5742.994 kb on - strand, within AO353_26080 at 5742.994 kb on - strand, within AO353_26080 at 5743.080 kb on - strand at 5743.187 kb on - strand at 5743.191 kb on + strand at 5743.277 kb on - strand at 5743.300 kb on + strand, within AO353_26085 at 5743.398 kb on + strand, within AO353_26085 at 5743.472 kb on + strand, within AO353_26085 at 5743.594 kb on - strand, within AO353_26085 at 5743.640 kb on + strand, within AO353_26085 at 5743.641 kb on - strand, within AO353_26085 at 5743.641 kb on - strand, within AO353_26085 at 5743.645 kb on - strand, within AO353_26085 at 5743.654 kb on - strand, within AO353_26085 at 5743.830 kb on + strand, within AO353_26085 at 5743.951 kb on + strand, within AO353_26085 at 5744.040 kb on + strand, within AO353_26085 at 5744.041 kb on - strand, within AO353_26085 at 5744.045 kb on + strand, within AO353_26085
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 5,741,951 + AO353_26075 0.55 -0.3 5,741,951 + AO353_26075 0.55 -0.1 5,741,952 - AO353_26075 0.55 +0.5 5,742,021 + AO353_26075 0.59 +0.1 5,742,022 - AO353_26075 0.59 +0.5 5,742,054 - AO353_26075 0.61 -0.5 5,742,054 - AO353_26075 0.61 +1.0 5,742,067 - AO353_26075 0.62 +0.7 5,742,070 - AO353_26075 0.62 +0.8 5,742,152 + AO353_26075 0.67 -0.3 5,742,169 + AO353_26075 0.68 -1.1 5,742,169 + AO353_26075 0.68 -0.1 5,742,172 + AO353_26075 0.68 -0.4 5,742,173 - AO353_26075 0.68 +1.1 5,742,173 - AO353_26075 0.68 +2.0 5,742,320 + AO353_26075 0.77 +0.2 5,742,321 - AO353_26075 0.77 -0.0 5,742,355 + AO353_26075 0.79 -1.3 5,742,508 + AO353_26075 0.88 -0.9 5,742,508 + AO353_26075 0.88 +1.5 5,742,509 - AO353_26075 0.88 +0.0 5,742,512 + AO353_26075 0.88 -1.9 5,742,513 - AO353_26075 0.88 -1.4 5,742,524 + AO353_26075 0.89 +0.2 5,742,525 - AO353_26075 0.89 -0.9 5,742,543 + AO353_26075 0.90 -1.2 5,742,543 + AO353_26075 0.90 +0.1 5,742,543 + AO353_26075 0.90 +1.5 5,742,552 + -0.3 5,742,552 + -0.9 5,742,553 - -1.0 5,742,555 + -1.0 5,742,556 - -1.9 5,742,593 + +1.6 5,742,605 - +1.0 5,742,616 - -0.3 5,742,688 - +1.5 5,742,691 - +0.1 5,742,830 - -1.9 5,742,994 - AO353_26080 0.68 +0.9 5,742,994 - AO353_26080 0.68 -1.1 5,742,994 - AO353_26080 0.68 -2.2 5,743,080 - -0.3 5,743,187 - -1.1 5,743,191 + +0.3 5,743,277 - +0.0 5,743,300 + AO353_26085 0.11 +0.3 5,743,398 + AO353_26085 0.20 -0.3 5,743,472 + AO353_26085 0.27 -1.5 5,743,594 - AO353_26085 0.38 -1.1 5,743,640 + AO353_26085 0.42 -0.1 5,743,641 - AO353_26085 0.42 -0.7 5,743,641 - AO353_26085 0.42 -2.9 5,743,645 - AO353_26085 0.43 +0.8 5,743,654 - AO353_26085 0.44 -0.5 5,743,830 + AO353_26085 0.60 +0.1 5,743,951 + AO353_26085 0.71 -0.3 5,744,040 + AO353_26085 0.79 +0.1 5,744,041 - AO353_26085 0.79 +0.0 5,744,045 + AO353_26085 0.80 +1.5
Or see this region's nucleotide sequence