Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25205 and AO353_25210 are separated by 44 nucleotides AO353_25210 and AO353_25215 are separated by 30 nucleotides
AO353_25205: AO353_25205 - permease DsdX, at 5,561,016 to 5,562,359
_25205
AO353_25210: AO353_25210 - D-serine ammonia-lyase (EC 4.3.1.18) <small>(from data)</small>, at 5,562,404 to 5,563,756
_25210
AO353_25215: AO353_25215 - transcriptional regulator, at 5,563,787 to 5,564,722
_25215
Position (kb) 5562
5563
5564 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5561.404 kb on - strand, within AO353_25205 at 5561.404 kb on - strand, within AO353_25205 at 5561.404 kb on - strand at 5561.404 kb on - strand, within AO353_25205 at 5561.439 kb on + strand, within AO353_25205 at 5561.439 kb on + strand, within AO353_25205 at 5561.440 kb on - strand, within AO353_25205 at 5561.449 kb on + strand, within AO353_25205 at 5561.565 kb on - strand, within AO353_25205 at 5561.680 kb on + strand, within AO353_25205 at 5561.680 kb on + strand, within AO353_25205 at 5561.681 kb on - strand, within AO353_25205 at 5561.681 kb on - strand, within AO353_25205 at 5561.709 kb on - strand, within AO353_25205 at 5561.869 kb on + strand, within AO353_25205 at 5561.990 kb on - strand, within AO353_25205 at 5562.116 kb on + strand, within AO353_25205 at 5562.117 kb on - strand, within AO353_25205 at 5562.136 kb on + strand, within AO353_25205 at 5562.136 kb on + strand, within AO353_25205 at 5562.136 kb on + strand, within AO353_25205 at 5562.137 kb on - strand, within AO353_25205 at 5562.137 kb on - strand, within AO353_25205 at 5562.137 kb on - strand, within AO353_25205 at 5562.140 kb on + strand, within AO353_25205 at 5562.140 kb on + strand at 5562.140 kb on + strand, within AO353_25205 at 5562.140 kb on + strand, within AO353_25205 at 5562.140 kb on + strand, within AO353_25205 at 5562.140 kb on + strand, within AO353_25205 at 5562.140 kb on + strand, within AO353_25205 at 5562.141 kb on - strand, within AO353_25205 at 5562.141 kb on - strand, within AO353_25205 at 5562.141 kb on - strand, within AO353_25205 at 5562.141 kb on - strand, within AO353_25205 at 5562.141 kb on - strand, within AO353_25205 at 5562.162 kb on + strand, within AO353_25205 at 5562.162 kb on + strand, within AO353_25205 at 5562.163 kb on - strand, within AO353_25205 at 5562.163 kb on - strand, within AO353_25205 at 5562.163 kb on - strand, within AO353_25205 at 5562.252 kb on + strand at 5562.252 kb on + strand at 5562.305 kb on - strand at 5562.328 kb on + strand at 5562.328 kb on + strand at 5562.329 kb on - strand at 5562.329 kb on - strand at 5562.332 kb on + strand at 5562.332 kb on + strand at 5562.332 kb on + strand at 5562.332 kb on + strand at 5562.333 kb on - strand at 5562.333 kb on - strand at 5562.333 kb on - strand at 5562.340 kb on + strand at 5562.340 kb on + strand at 5562.340 kb on + strand at 5562.340 kb on + strand at 5562.341 kb on - strand at 5562.341 kb on - strand at 5562.341 kb on - strand at 5562.355 kb on + strand at 5562.356 kb on - strand at 5562.379 kb on + strand at 5562.379 kb on + strand at 5562.396 kb on + strand at 5562.396 kb on + strand at 5562.396 kb on + strand at 5562.397 kb on - strand at 5562.397 kb on - strand at 5562.397 kb on - strand at 5562.404 kb on - strand at 5562.415 kb on + strand at 5562.416 kb on - strand at 5562.424 kb on - strand at 5562.434 kb on + strand at 5562.499 kb on + strand at 5562.499 kb on + strand at 5562.500 kb on - strand at 5562.500 kb on - strand at 5562.531 kb on + strand at 5562.531 kb on + strand at 5562.532 kb on - strand at 5562.532 kb on - strand at 5562.532 kb on - strand at 5562.590 kb on + strand, within AO353_25210 at 5562.590 kb on + strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.742 kb on + strand, within AO353_25210 at 5562.743 kb on - strand, within AO353_25210 at 5562.838 kb on + strand, within AO353_25210 at 5562.842 kb on + strand, within AO353_25210 at 5562.842 kb on + strand, within AO353_25210 at 5562.843 kb on - strand, within AO353_25210 at 5562.843 kb on - strand, within AO353_25210 at 5562.843 kb on - strand, within AO353_25210 at 5562.843 kb on - strand, within AO353_25210 at 5562.843 kb on - strand, within AO353_25210 at 5562.843 kb on - strand, within AO353_25210 at 5562.888 kb on - strand at 5562.924 kb on + strand, within AO353_25210 at 5563.006 kb on + strand, within AO353_25210 at 5563.012 kb on - strand, within AO353_25210 at 5563.012 kb on - strand, within AO353_25210 at 5563.041 kb on - strand, within AO353_25210 at 5563.053 kb on - strand, within AO353_25210 at 5563.106 kb on + strand, within AO353_25210 at 5563.107 kb on - strand, within AO353_25210 at 5563.113 kb on + strand, within AO353_25210 at 5563.113 kb on + strand, within AO353_25210 at 5563.229 kb on + strand, within AO353_25210 at 5563.230 kb on - strand, within AO353_25210 at 5563.355 kb on + strand, within AO353_25210 at 5563.356 kb on - strand, within AO353_25210 at 5563.425 kb on + strand, within AO353_25210 at 5563.426 kb on - strand, within AO353_25210 at 5563.474 kb on + strand, within AO353_25210 at 5563.474 kb on + strand, within AO353_25210 at 5563.484 kb on + strand, within AO353_25210 at 5563.485 kb on - strand, within AO353_25210 at 5563.485 kb on - strand, within AO353_25210 at 5563.487 kb on + strand, within AO353_25210 at 5563.487 kb on + strand, within AO353_25210 at 5563.487 kb on + strand, within AO353_25210 at 5563.487 kb on + strand, within AO353_25210 at 5563.487 kb on + strand, within AO353_25210 at 5563.487 kb on + strand, within AO353_25210 at 5563.488 kb on - strand, within AO353_25210 at 5563.488 kb on - strand, within AO353_25210 at 5563.488 kb on - strand, within AO353_25210 at 5563.488 kb on - strand, within AO353_25210 at 5563.488 kb on - strand, within AO353_25210 at 5563.488 kb on - strand, within AO353_25210 at 5563.488 kb on - strand, within AO353_25210 at 5563.488 kb on - strand, within AO353_25210 at 5563.488 kb on - strand, within AO353_25210 at 5563.489 kb on + strand, within AO353_25210 at 5563.490 kb on - strand, within AO353_25210 at 5563.613 kb on + strand, within AO353_25210 at 5563.613 kb on + strand, within AO353_25210 at 5563.613 kb on + strand at 5563.613 kb on + strand, within AO353_25210 at 5563.614 kb on - strand, within AO353_25210 at 5563.647 kb on + strand at 5563.648 kb on - strand at 5563.715 kb on + strand at 5563.715 kb on + strand at 5563.715 kb on + strand at 5563.716 kb on - strand at 5563.716 kb on - strand at 5563.716 kb on - strand at 5563.724 kb on - strand at 5563.754 kb on + strand at 5563.755 kb on - strand at 5563.781 kb on - strand at 5563.781 kb on - strand at 5563.804 kb on + strand at 5563.849 kb on + strand at 5563.849 kb on + strand at 5563.956 kb on + strand, within AO353_25215 at 5563.957 kb on - strand, within AO353_25215 at 5563.957 kb on - strand, within AO353_25215 at 5563.981 kb on - strand, within AO353_25215 at 5563.985 kb on - strand, within AO353_25215 at 5564.108 kb on + strand, within AO353_25215 at 5564.108 kb on + strand, within AO353_25215 at 5564.109 kb on - strand, within AO353_25215 at 5564.109 kb on - strand, within AO353_25215 at 5564.109 kb on - strand, within AO353_25215 at 5564.109 kb on - strand, within AO353_25215 at 5564.165 kb on - strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.234 kb on - strand, within AO353_25215 at 5564.234 kb on - strand, within AO353_25215 at 5564.330 kb on + strand, within AO353_25215 at 5564.331 kb on - strand, within AO353_25215 at 5564.331 kb on - strand, within AO353_25215 at 5564.440 kb on - strand, within AO353_25215 at 5564.614 kb on + strand, within AO353_25215 at 5564.614 kb on + strand, within AO353_25215 at 5564.626 kb on + strand, within AO353_25215 at 5564.626 kb on + strand, within AO353_25215 at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.631 kb on - strand at 5564.631 kb on - strand at 5564.631 kb on - strand at 5564.631 kb on - strand at 5564.631 kb on - strand at 5564.636 kb on + strand at 5564.637 kb on - strand at 5564.639 kb on + strand at 5564.640 kb on - strand at 5564.716 kb on + strand at 5564.717 kb on - strand at 5564.717 kb on - strand at 5564.717 kb on - strand at 5564.717 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 5,561,404 - AO353_25205 0.29 -1.2 5,561,404 - AO353_25205 0.29 -1.2 5,561,404 - +1.4 5,561,404 - AO353_25205 0.29 -1.2 5,561,439 + AO353_25205 0.31 -0.4 5,561,439 + AO353_25205 0.31 +0.6 5,561,440 - AO353_25205 0.32 -0.7 5,561,449 + AO353_25205 0.32 -0.4 5,561,565 - AO353_25205 0.41 -0.6 5,561,680 + AO353_25205 0.49 +2.4 5,561,680 + AO353_25205 0.49 -1.1 5,561,681 - AO353_25205 0.49 +0.9 5,561,681 - AO353_25205 0.49 -1.8 5,561,709 - AO353_25205 0.52 -1.8 5,561,869 + AO353_25205 0.63 +0.3 5,561,990 - AO353_25205 0.72 -0.5 5,562,116 + AO353_25205 0.82 -0.2 5,562,117 - AO353_25205 0.82 +0.8 5,562,136 + AO353_25205 0.83 -1.7 5,562,136 + AO353_25205 0.83 +1.1 5,562,136 + AO353_25205 0.83 -1.6 5,562,137 - AO353_25205 0.83 +0.8 5,562,137 - AO353_25205 0.83 +2.0 5,562,137 - AO353_25205 0.83 -0.7 5,562,140 + AO353_25205 0.84 +0.8 5,562,140 + +2.0 5,562,140 + AO353_25205 0.84 +1.4 5,562,140 + AO353_25205 0.84 -1.2 5,562,140 + AO353_25205 0.84 -0.8 5,562,140 + AO353_25205 0.84 -0.8 5,562,140 + AO353_25205 0.84 -0.3 5,562,141 - AO353_25205 0.84 +2.4 5,562,141 - AO353_25205 0.84 +2.0 5,562,141 - AO353_25205 0.84 -0.3 5,562,141 - AO353_25205 0.84 -1.6 5,562,141 - AO353_25205 0.84 -0.2 5,562,162 + AO353_25205 0.85 -2.2 5,562,162 + AO353_25205 0.85 +0.5 5,562,163 - AO353_25205 0.85 -0.6 5,562,163 - AO353_25205 0.85 +0.7 5,562,163 - AO353_25205 0.85 +1.1 5,562,252 + -0.9 5,562,252 + +2.7 5,562,305 - -1.3 5,562,328 + -0.1 5,562,328 + +0.2 5,562,329 - -1.2 5,562,329 - -0.1 5,562,332 + -0.2 5,562,332 + -0.3 5,562,332 + -0.9 5,562,332 + -0.6 5,562,333 - -0.9 5,562,333 - -0.1 5,562,333 - +1.0 5,562,340 + +1.1 5,562,340 + +0.4 5,562,340 + -1.4 5,562,340 + -0.6 5,562,341 - -0.4 5,562,341 - -0.5 5,562,341 - -0.3 5,562,355 + +0.8 5,562,356 - +0.2 5,562,379 + +1.4 5,562,379 + -0.1 5,562,396 + +0.9 5,562,396 + +2.4 5,562,396 + +0.2 5,562,397 - -1.6 5,562,397 - -0.7 5,562,397 - +0.4 5,562,404 - -2.1 5,562,415 + -1.2 5,562,416 - -1.7 5,562,424 - +1.1 5,562,434 + +1.0 5,562,499 + +1.0 5,562,499 + -1.1 5,562,500 - +0.8 5,562,500 - +3.0 5,562,531 + +0.7 5,562,531 + -0.2 5,562,532 - +0.8 5,562,532 - -0.6 5,562,532 - -0.2 5,562,590 + AO353_25210 0.14 +0.8 5,562,590 + AO353_25210 0.14 -0.6 5,562,591 - AO353_25210 0.14 -1.6 5,562,591 - AO353_25210 0.14 +1.0 5,562,591 - AO353_25210 0.14 -0.9 5,562,591 - AO353_25210 0.14 +0.3 5,562,591 - AO353_25210 0.14 +1.0 5,562,591 - AO353_25210 0.14 -0.6 5,562,591 - AO353_25210 0.14 -0.9 5,562,591 - AO353_25210 0.14 -0.9 5,562,742 + AO353_25210 0.25 -2.1 5,562,743 - AO353_25210 0.25 -0.1 5,562,838 + AO353_25210 0.32 +0.4 5,562,842 + AO353_25210 0.32 -1.1 5,562,842 + AO353_25210 0.32 -1.8 5,562,843 - AO353_25210 0.32 +0.4 5,562,843 - AO353_25210 0.32 +0.2 5,562,843 - AO353_25210 0.32 -0.4 5,562,843 - AO353_25210 0.32 +1.4 5,562,843 - AO353_25210 0.32 -1.6 5,562,843 - AO353_25210 0.32 -0.5 5,562,888 - -1.2 5,562,924 + AO353_25210 0.38 -1.0 5,563,006 + AO353_25210 0.44 +0.5 5,563,012 - AO353_25210 0.45 +0.2 5,563,012 - AO353_25210 0.45 +0.2 5,563,041 - AO353_25210 0.47 -2.3 5,563,053 - AO353_25210 0.48 -0.0 5,563,106 + AO353_25210 0.52 +0.2 5,563,107 - AO353_25210 0.52 +0.1 5,563,113 + AO353_25210 0.52 +0.0 5,563,113 + AO353_25210 0.52 +0.7 5,563,229 + AO353_25210 0.61 +1.2 5,563,230 - AO353_25210 0.61 +1.0 5,563,355 + AO353_25210 0.70 -1.7 5,563,356 - AO353_25210 0.70 -0.6 5,563,425 + AO353_25210 0.75 -0.2 5,563,426 - AO353_25210 0.76 +0.8 5,563,474 + AO353_25210 0.79 +1.0 5,563,474 + AO353_25210 0.79 -2.5 5,563,484 + AO353_25210 0.80 -1.4 5,563,485 - AO353_25210 0.80 +1.8 5,563,485 - AO353_25210 0.80 -0.7 5,563,487 + AO353_25210 0.80 +0.1 5,563,487 + AO353_25210 0.80 -2.2 5,563,487 + AO353_25210 0.80 -0.0 5,563,487 + AO353_25210 0.80 +0.8 5,563,487 + AO353_25210 0.80 +1.0 5,563,487 + AO353_25210 0.80 +2.4 5,563,488 - AO353_25210 0.80 +0.4 5,563,488 - AO353_25210 0.80 +0.9 5,563,488 - AO353_25210 0.80 +0.4 5,563,488 - AO353_25210 0.80 +0.4 5,563,488 - AO353_25210 0.80 +0.0 5,563,488 - AO353_25210 0.80 +0.5 5,563,488 - AO353_25210 0.80 -1.9 5,563,488 - AO353_25210 0.80 -1.2 5,563,488 - AO353_25210 0.80 -0.6 5,563,489 + AO353_25210 0.80 +0.1 5,563,490 - AO353_25210 0.80 +1.1 5,563,613 + AO353_25210 0.89 -1.3 5,563,613 + AO353_25210 0.89 +0.7 5,563,613 + +0.6 5,563,613 + AO353_25210 0.89 +2.7 5,563,614 - AO353_25210 0.89 +0.6 5,563,647 + -1.1 5,563,648 - +1.8 5,563,715 + -1.2 5,563,715 + -0.4 5,563,715 + -1.2 5,563,716 - -0.4 5,563,716 - -1.3 5,563,716 - -0.6 5,563,724 - +0.1 5,563,754 + -0.2 5,563,755 - +1.6 5,563,781 - -0.6 5,563,781 - -1.3 5,563,804 + +0.9 5,563,849 + +1.4 5,563,849 + -1.4 5,563,956 + AO353_25215 0.18 -0.8 5,563,957 - AO353_25215 0.18 -0.4 5,563,957 - AO353_25215 0.18 -1.4 5,563,981 - AO353_25215 0.21 +0.1 5,563,985 - AO353_25215 0.21 +1.1 5,564,108 + AO353_25215 0.34 -1.4 5,564,108 + AO353_25215 0.34 -0.3 5,564,109 - AO353_25215 0.34 -0.2 5,564,109 - AO353_25215 0.34 +2.1 5,564,109 - AO353_25215 0.34 +0.9 5,564,109 - AO353_25215 0.34 -2.8 5,564,165 - AO353_25215 0.40 -2.8 5,564,233 + AO353_25215 0.48 -0.2 5,564,233 + AO353_25215 0.48 +0.9 5,564,233 + AO353_25215 0.48 -0.0 5,564,233 + AO353_25215 0.48 -0.1 5,564,233 + AO353_25215 0.48 -0.7 5,564,233 + AO353_25215 0.48 -0.4 5,564,233 + AO353_25215 0.48 -0.2 5,564,233 + AO353_25215 0.48 -0.4 5,564,234 - AO353_25215 0.48 +0.9 5,564,234 - AO353_25215 0.48 +0.0 5,564,330 + AO353_25215 0.58 +0.7 5,564,331 - AO353_25215 0.58 -0.7 5,564,331 - AO353_25215 0.58 +0.1 5,564,440 - AO353_25215 0.70 -0.6 5,564,614 + AO353_25215 0.88 +0.1 5,564,614 + AO353_25215 0.88 +0.6 5,564,626 + AO353_25215 0.90 -0.3 5,564,626 + AO353_25215 0.90 +1.3 5,564,630 + -0.4 5,564,630 + +0.4 5,564,630 + -2.2 5,564,630 + +0.4 5,564,630 + +1.6 5,564,630 + -1.3 5,564,630 + +0.3 5,564,630 + +0.6 5,564,630 + +0.5 5,564,630 + +0.6 5,564,631 - +3.0 5,564,631 - +1.4 5,564,631 - -0.8 5,564,631 - +0.5 5,564,631 - -1.2 5,564,636 + +0.3 5,564,637 - +0.9 5,564,639 + -0.0 5,564,640 - -2.5 5,564,716 + -0.2 5,564,717 - +1.4 5,564,717 - -1.1 5,564,717 - -0.4 5,564,717 - -2.5
Or see this region's nucleotide sequence