Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24915

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24910 and AO353_24915 are separated by 211 nucleotidesAO353_24915 and AO353_24920 are separated by 89 nucleotides AO353_24910: AO353_24910 - glutamine synthetase, at 5,494,263 to 5,495,636 _24910 AO353_24915: AO353_24915 - hypothetical protein, at 5,495,848 to 5,496,165 _24915 AO353_24920: AO353_24920 - cysteine desulfurase, at 5,496,255 to 5,497,703 _24920 Position (kb) 5495 5496 5497Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5494.873 kb on + strand, within AO353_24910at 5494.874 kb on - strand, within AO353_24910at 5495.113 kb on + strand, within AO353_24910at 5495.113 kb on + strand, within AO353_24910at 5495.114 kb on - strand, within AO353_24910at 5495.114 kb on - strand, within AO353_24910at 5495.114 kb on - strand, within AO353_24910at 5495.125 kb on + strand, within AO353_24910at 5495.125 kb on + strand, within AO353_24910at 5495.125 kb on + strand, within AO353_24910at 5495.126 kb on - strand, within AO353_24910at 5495.153 kb on - strand, within AO353_24910at 5495.153 kb on - strand, within AO353_24910at 5495.153 kb on - strand, within AO353_24910at 5495.153 kb on - strand, within AO353_24910at 5495.176 kb on + strand, within AO353_24910at 5495.177 kb on - strand, within AO353_24910at 5495.177 kb on - strand, within AO353_24910at 5495.194 kb on + strand, within AO353_24910at 5495.194 kb on + strand, within AO353_24910at 5495.194 kb on + strand, within AO353_24910at 5495.194 kb on + strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910at 5495.195 kb on - strand, within AO353_24910at 5495.280 kb on - strand, within AO353_24910at 5495.399 kb on - strand, within AO353_24910at 5495.467 kb on + strand, within AO353_24910at 5495.467 kb on + strand, within AO353_24910at 5495.467 kb on + strand, within AO353_24910at 5495.467 kb on + strand, within AO353_24910at 5495.468 kb on - strand, within AO353_24910at 5495.468 kb on - strand, within AO353_24910at 5495.550 kb on - strandat 5495.676 kb on + strandat 5495.676 kb on + strandat 5495.676 kb on + strandat 5495.677 kb on - strandat 5495.680 kb on + strandat 5495.680 kb on + strandat 5495.680 kb on + strandat 5495.681 kb on - strandat 5495.681 kb on - strandat 5495.681 kb on - strandat 5495.681 kb on - strandat 5495.681 kb on - strandat 5495.752 kb on + strandat 5495.757 kb on + strandat 5495.757 kb on + strandat 5495.758 kb on - strandat 5495.758 kb on - strandat 5495.820 kb on + strandat 5495.820 kb on + strandat 5495.820 kb on + strandat 5495.821 kb on - strandat 5495.821 kb on - strandat 5495.821 kb on - strandat 5495.821 kb on - strandat 5495.847 kb on + strandat 5495.847 kb on + strandat 5495.847 kb on + strandat 5495.848 kb on - strandat 5495.848 kb on - strandat 5495.848 kb on - strandat 5495.904 kb on - strand, within AO353_24915at 5496.011 kb on + strand, within AO353_24915at 5496.012 kb on - strand, within AO353_24915at 5496.050 kb on - strand, within AO353_24915at 5496.050 kb on - strand, within AO353_24915at 5496.094 kb on + strand, within AO353_24915at 5496.144 kb on - strandat 5496.207 kb on + strandat 5496.207 kb on + strandat 5496.207 kb on + strandat 5496.207 kb on + strandat 5496.207 kb on + strandat 5496.207 kb on + strandat 5496.208 kb on - strandat 5496.209 kb on + strandat 5496.209 kb on + strandat 5496.209 kb on + strandat 5496.209 kb on + strandat 5496.210 kb on - strandat 5496.210 kb on - strandat 5496.210 kb on - strandat 5496.210 kb on - strandat 5496.210 kb on - strandat 5496.210 kb on - strandat 5496.210 kb on - strandat 5496.210 kb on - strandat 5496.213 kb on + strandat 5496.213 kb on + strandat 5496.213 kb on + strandat 5496.213 kb on + strandat 5496.214 kb on - strandat 5496.214 kb on - strandat 5496.300 kb on + strandat 5496.300 kb on + strandat 5496.300 kb on + strandat 5496.301 kb on - strandat 5496.301 kb on - strandat 5496.477 kb on + strand, within AO353_24920at 5496.507 kb on + strand, within AO353_24920at 5496.507 kb on + strand, within AO353_24920at 5496.507 kb on + strand, within AO353_24920at 5496.507 kb on + strand, within AO353_24920at 5496.507 kb on + strand, within AO353_24920at 5496.507 kb on + strand, within AO353_24920at 5496.507 kb on + strand, within AO353_24920at 5496.507 kb on + strand, within AO353_24920at 5496.507 kb on + strand, within AO353_24920at 5496.508 kb on - strand, within AO353_24920at 5496.508 kb on - strandat 5496.508 kb on - strand, within AO353_24920at 5496.508 kb on - strand, within AO353_24920at 5496.508 kb on - strand, within AO353_24920at 5496.508 kb on - strand, within AO353_24920at 5496.508 kb on - strand, within AO353_24920at 5496.508 kb on - strand, within AO353_24920at 5496.508 kb on - strand, within AO353_24920at 5496.511 kb on - strand, within AO353_24920at 5496.596 kb on + strand, within AO353_24920at 5496.597 kb on - strand, within AO353_24920at 5496.671 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.756 kb on - strand, within AO353_24920at 5496.756 kb on - strand, within AO353_24920at 5496.756 kb on - strand, within AO353_24920at 5496.756 kb on - strand, within AO353_24920at 5496.756 kb on - strand, within AO353_24920at 5496.756 kb on - strand, within AO353_24920at 5496.756 kb on - strand, within AO353_24920at 5496.759 kb on + strand, within AO353_24920at 5496.760 kb on - strand, within AO353_24920at 5496.760 kb on - strand, within AO353_24920at 5496.760 kb on - strand, within AO353_24920at 5496.760 kb on - strand, within AO353_24920at 5496.840 kb on + strand, within AO353_24920at 5496.840 kb on + strand, within AO353_24920at 5496.840 kb on + strand, within AO353_24920at 5496.841 kb on - strand, within AO353_24920at 5496.841 kb on - strand, within AO353_24920at 5496.841 kb on - strand, within AO353_24920at 5496.883 kb on - strand, within AO353_24920at 5496.951 kb on + strand, within AO353_24920at 5496.951 kb on + strand, within AO353_24920at 5496.960 kb on + strand, within AO353_24920at 5496.961 kb on - strand, within AO353_24920at 5496.961 kb on - strand, within AO353_24920at 5496.961 kb on - strand, within AO353_24920at 5496.961 kb on - strand, within AO353_24920at 5496.961 kb on - strand, within AO353_24920at 5496.996 kb on - strand, within AO353_24920at 5497.053 kb on + strand, within AO353_24920at 5497.054 kb on - strand, within AO353_24920at 5497.054 kb on - strand, within AO353_24920at 5497.054 kb on - strand, within AO353_24920

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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5,494,873 + AO353_24910 0.44 -1.3
5,494,874 - AO353_24910 0.44 +0.4
5,495,113 + AO353_24910 0.62 +0.2
5,495,113 + AO353_24910 0.62 +0.7
5,495,114 - AO353_24910 0.62 -0.8
5,495,114 - AO353_24910 0.62 -2.5
5,495,114 - AO353_24910 0.62 -2.1
5,495,125 + AO353_24910 0.63 -1.7
5,495,125 + AO353_24910 0.63 +0.1
5,495,125 + AO353_24910 0.63 -0.9
5,495,126 - AO353_24910 0.63 +0.0
5,495,153 - AO353_24910 0.65 +1.8
5,495,153 - AO353_24910 0.65 -0.9
5,495,153 - AO353_24910 0.65 +0.4
5,495,153 - AO353_24910 0.65 +0.8
5,495,176 + AO353_24910 0.66 -0.3
5,495,177 - AO353_24910 0.67 +1.1
5,495,177 - AO353_24910 0.67 -2.1
5,495,194 + AO353_24910 0.68 -0.6
5,495,194 + AO353_24910 0.68 +0.7
5,495,194 + AO353_24910 0.68 -1.1
5,495,194 + AO353_24910 0.68 -0.3
5,495,195 - AO353_24910 0.68 -0.8
5,495,195 - AO353_24910 0.68 +0.9
5,495,195 - AO353_24910 0.68 -0.2
5,495,195 - AO353_24910 0.68 +0.1
5,495,195 - AO353_24910 0.68 +1.6
5,495,195 - AO353_24910 0.68 +0.4
5,495,195 - AO353_24910 0.68 +0.2
5,495,195 - AO353_24910 0.68 +3.0
5,495,280 - AO353_24910 0.74 +0.2
5,495,399 - AO353_24910 0.83 -0.9
5,495,467 + AO353_24910 0.88 -1.1
5,495,467 + AO353_24910 0.88 -1.3
5,495,467 + AO353_24910 0.88 +1.4
5,495,467 + AO353_24910 0.88 -2.4
5,495,468 - AO353_24910 0.88 +0.2
5,495,468 - AO353_24910 0.88 +1.6
5,495,550 - +0.1
5,495,676 + -1.4
5,495,676 + -0.5
5,495,676 + +0.5
5,495,677 - +0.1
5,495,680 + -0.8
5,495,680 + +0.4
5,495,680 + +0.4
5,495,681 - -1.2
5,495,681 - -0.7
5,495,681 - -0.3
5,495,681 - -1.4
5,495,681 - +1.0
5,495,752 + +0.6
5,495,757 + +1.4
5,495,757 + +0.2
5,495,758 - -0.6
5,495,758 - +0.1
5,495,820 + +0.3
5,495,820 + +0.6
5,495,820 + +1.4
5,495,821 - -0.2
5,495,821 - -0.9
5,495,821 - +2.2
5,495,821 - -0.5
5,495,847 + -0.4
5,495,847 + +0.4
5,495,847 + -0.6
5,495,848 - -0.2
5,495,848 - +2.4
5,495,848 - +1.7
5,495,904 - AO353_24915 0.18 -1.4
5,496,011 + AO353_24915 0.51 -0.4
5,496,012 - AO353_24915 0.52 +1.8
5,496,050 - AO353_24915 0.64 -1.9
5,496,050 - AO353_24915 0.64 -0.9
5,496,094 + AO353_24915 0.77 +0.7
5,496,144 - +1.1
5,496,207 + +0.7
5,496,207 + -0.9
5,496,207 + -1.8
5,496,207 + -1.4
5,496,207 + -1.8
5,496,207 + +0.4
5,496,208 - -1.1
5,496,209 + -0.2
5,496,209 + +1.1
5,496,209 + +0.4
5,496,209 + -1.5
5,496,210 - +0.3
5,496,210 - -0.2
5,496,210 - +0.0
5,496,210 - +0.4
5,496,210 - +0.6
5,496,210 - +0.6
5,496,210 - -0.2
5,496,210 - -0.9
5,496,213 + +0.4
5,496,213 + -1.9
5,496,213 + +0.7
5,496,213 + +2.4
5,496,214 - +0.6
5,496,214 - +1.3
5,496,300 + +0.4
5,496,300 + -0.6
5,496,300 + -0.5
5,496,301 - +1.4
5,496,301 - -1.8
5,496,477 + AO353_24920 0.15 -0.6
5,496,507 + AO353_24920 0.17 +1.2
5,496,507 + AO353_24920 0.17 -0.8
5,496,507 + AO353_24920 0.17 -1.0
5,496,507 + AO353_24920 0.17 +2.0
5,496,507 + AO353_24920 0.17 -0.5
5,496,507 + AO353_24920 0.17 +1.0
5,496,507 + AO353_24920 0.17 +1.8
5,496,507 + AO353_24920 0.17 -2.6
5,496,507 + AO353_24920 0.17 -1.2
5,496,508 - AO353_24920 0.17 -0.2
5,496,508 - +1.4
5,496,508 - AO353_24920 0.17 -0.2
5,496,508 - AO353_24920 0.17 -1.4
5,496,508 - AO353_24920 0.17 +0.4
5,496,508 - AO353_24920 0.17 +0.7
5,496,508 - AO353_24920 0.17 -2.3
5,496,508 - AO353_24920 0.17 -0.2
5,496,508 - AO353_24920 0.17 -0.0
5,496,511 - AO353_24920 0.18 +2.0
5,496,596 + AO353_24920 0.24 -0.3
5,496,597 - AO353_24920 0.24 +0.6
5,496,671 + AO353_24920 0.29 -0.4
5,496,755 + AO353_24920 0.35 -0.5
5,496,755 + AO353_24920 0.35 +0.4
5,496,755 + AO353_24920 0.35 -2.1
5,496,755 + AO353_24920 0.35 -0.9
5,496,755 + AO353_24920 0.35 -0.8
5,496,755 + AO353_24920 0.35 +1.2
5,496,755 + AO353_24920 0.35 -0.0
5,496,755 + AO353_24920 0.35 +0.4
5,496,755 + AO353_24920 0.35 +0.2
5,496,755 + AO353_24920 0.35 +1.3
5,496,755 + AO353_24920 0.35 +1.0
5,496,756 - AO353_24920 0.35 +0.6
5,496,756 - AO353_24920 0.35 +1.4
5,496,756 - AO353_24920 0.35 +0.9
5,496,756 - AO353_24920 0.35 +0.4
5,496,756 - AO353_24920 0.35 +1.1
5,496,756 - AO353_24920 0.35 -0.9
5,496,756 - AO353_24920 0.35 +1.1
5,496,759 + AO353_24920 0.35 +1.0
5,496,760 - AO353_24920 0.35 +0.1
5,496,760 - AO353_24920 0.35 -0.0
5,496,760 - AO353_24920 0.35 -0.8
5,496,760 - AO353_24920 0.35 -0.6
5,496,840 + AO353_24920 0.40 +0.8
5,496,840 + AO353_24920 0.40 +0.2
5,496,840 + AO353_24920 0.40 +0.7
5,496,841 - AO353_24920 0.40 -0.2
5,496,841 - AO353_24920 0.40 -0.9
5,496,841 - AO353_24920 0.40 -0.1
5,496,883 - AO353_24920 0.43 -0.1
5,496,951 + AO353_24920 0.48 +0.9
5,496,951 + AO353_24920 0.48 +1.3
5,496,960 + AO353_24920 0.49 +0.7
5,496,961 - AO353_24920 0.49 +0.2
5,496,961 - AO353_24920 0.49 -1.4
5,496,961 - AO353_24920 0.49 -1.3
5,496,961 - AO353_24920 0.49 -0.4
5,496,961 - AO353_24920 0.49 -1.2
5,496,996 - AO353_24920 0.51 -0.2
5,497,053 + AO353_24920 0.55 +1.4
5,497,054 - AO353_24920 0.55 -1.8
5,497,054 - AO353_24920 0.55 +0.7
5,497,054 - AO353_24920 0.55 +3.0

Or see this region's nucleotide sequence