Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24730 and AO353_24735 are separated by 238 nucleotides AO353_24735 and AO353_24740 are separated by 305 nucleotides AO353_24740 and AO353_24745 are separated by 9 nucleotides AO353_24745 and AO353_24750 are separated by 280 nucleotides
AO353_24730: AO353_24730 - polyurethanase, at 5,450,594 to 5,452,447
_24730
AO353_24735: AO353_24735 - hypothetical protein, at 5,452,686 to 5,453,108
_24735
AO353_24740: AO353_24740 - hypothetical protein, at 5,453,414 to 5,453,800
_24740
AO353_24745: AO353_24745 - hypothetical protein, at 5,453,810 to 5,454,034
_24745
AO353_24750: AO353_24750 - DNA damage response nuclease (from data) , at 5,454,315 to 5,455,967
_24750
Position (kb)
5453
5454 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5452.451 kb on + strand at 5452.452 kb on - strand at 5452.452 kb on - strand at 5452.452 kb on - strand at 5452.498 kb on + strand at 5452.498 kb on + strand at 5452.560 kb on + strand at 5452.645 kb on + strand at 5452.645 kb on + strand at 5452.645 kb on + strand at 5452.687 kb on + strand at 5452.688 kb on - strand at 5452.688 kb on - strand at 5452.772 kb on - strand, within AO353_24735 at 5452.798 kb on + strand, within AO353_24735 at 5452.798 kb on + strand, within AO353_24735 at 5452.798 kb on + strand, within AO353_24735 at 5452.799 kb on - strand, within AO353_24735 at 5452.799 kb on - strand, within AO353_24735 at 5452.799 kb on - strand, within AO353_24735 at 5452.921 kb on + strand, within AO353_24735 at 5452.921 kb on + strand, within AO353_24735 at 5452.922 kb on - strand, within AO353_24735 at 5452.947 kb on + strand, within AO353_24735 at 5452.948 kb on - strand, within AO353_24735 at 5452.997 kb on - strand, within AO353_24735 at 5453.019 kb on - strand, within AO353_24735 at 5453.044 kb on - strand, within AO353_24735 at 5453.118 kb on + strand at 5453.118 kb on + strand at 5453.118 kb on + strand at 5453.136 kb on - strand at 5453.271 kb on + strand at 5453.272 kb on - strand at 5453.272 kb on - strand at 5453.321 kb on - strand at 5453.321 kb on - strand at 5453.339 kb on + strand at 5453.339 kb on + strand at 5453.339 kb on + strand at 5453.339 kb on + strand at 5453.339 kb on + strand at 5453.340 kb on - strand at 5453.340 kb on - strand at 5453.419 kb on + strand at 5453.419 kb on + strand at 5453.513 kb on + strand, within AO353_24740 at 5453.520 kb on + strand, within AO353_24740 at 5453.521 kb on - strand, within AO353_24740 at 5453.662 kb on + strand, within AO353_24740 at 5453.663 kb on - strand, within AO353_24740 at 5453.663 kb on - strand, within AO353_24740 at 5453.693 kb on + strand, within AO353_24740 at 5453.931 kb on + strand, within AO353_24745 at 5453.931 kb on + strand, within AO353_24745 at 5453.982 kb on - strand, within AO353_24745 at 5454.023 kb on - strand at 5454.023 kb on - strand at 5454.029 kb on - strand at 5454.038 kb on + strand at 5454.039 kb on - strand at 5454.039 kb on - strand at 5454.050 kb on - strand at 5454.050 kb on - strand at 5454.178 kb on + strand at 5454.178 kb on + strand at 5454.179 kb on - strand at 5454.179 kb on - strand at 5454.179 kb on - strand at 5454.179 kb on - strand at 5454.215 kb on - strand at 5454.311 kb on - strand at 5454.345 kb on + strand at 5454.345 kb on + strand at 5454.345 kb on + strand at 5454.345 kb on + strand at 5454.346 kb on - strand at 5454.346 kb on - strand at 5454.346 kb on - strand at 5454.348 kb on + strand at 5454.349 kb on - strand at 5454.349 kb on - strand at 5454.349 kb on - strand at 5454.393 kb on + strand at 5454.393 kb on + strand at 5454.394 kb on - strand at 5454.525 kb on + strand, within AO353_24750 at 5454.535 kb on + strand, within AO353_24750 at 5454.633 kb on - strand, within AO353_24750 at 5454.633 kb on - strand, within AO353_24750
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 5,452,451 + -1.3 5,452,452 - +0.1 5,452,452 - +1.1 5,452,452 - +1.6 5,452,498 + +0.7 5,452,498 + -2.4 5,452,560 + +0.6 5,452,645 + +0.9 5,452,645 + +0.5 5,452,645 + +0.6 5,452,687 + -1.6 5,452,688 - -0.1 5,452,688 - +0.1 5,452,772 - AO353_24735 0.20 -1.1 5,452,798 + AO353_24735 0.26 -1.4 5,452,798 + AO353_24735 0.26 -1.6 5,452,798 + AO353_24735 0.26 -1.0 5,452,799 - AO353_24735 0.27 +0.7 5,452,799 - AO353_24735 0.27 -0.7 5,452,799 - AO353_24735 0.27 -0.6 5,452,921 + AO353_24735 0.56 +0.2 5,452,921 + AO353_24735 0.56 +0.5 5,452,922 - AO353_24735 0.56 +2.2 5,452,947 + AO353_24735 0.62 -0.2 5,452,948 - AO353_24735 0.62 +1.3 5,452,997 - AO353_24735 0.74 +0.2 5,453,019 - AO353_24735 0.79 -0.6 5,453,044 - AO353_24735 0.85 +0.2 5,453,118 + -0.6 5,453,118 + +2.4 5,453,118 + -0.2 5,453,136 - -1.2 5,453,271 + +0.1 5,453,272 - +0.7 5,453,272 - +0.2 5,453,321 - -0.1 5,453,321 - -1.9 5,453,339 + +0.4 5,453,339 + +1.0 5,453,339 + +1.4 5,453,339 + -0.9 5,453,339 + +0.1 5,453,340 - +2.4 5,453,340 - +0.9 5,453,419 + +0.4 5,453,419 + -0.7 5,453,513 + AO353_24740 0.26 -1.4 5,453,520 + AO353_24740 0.27 +0.5 5,453,521 - AO353_24740 0.28 -1.6 5,453,662 + AO353_24740 0.64 -0.9 5,453,663 - AO353_24740 0.64 -0.9 5,453,663 - AO353_24740 0.64 -0.8 5,453,693 + AO353_24740 0.72 -0.3 5,453,931 + AO353_24745 0.54 -1.2 5,453,931 + AO353_24745 0.54 -0.1 5,453,982 - AO353_24745 0.76 -0.3 5,454,023 - +1.1 5,454,023 - -0.7 5,454,029 - -1.2 5,454,038 + -0.2 5,454,039 - -1.9 5,454,039 - -0.6 5,454,050 - +0.4 5,454,050 - +0.6 5,454,178 + +0.8 5,454,178 + -1.4 5,454,179 - -0.2 5,454,179 - +0.9 5,454,179 - +1.1 5,454,179 - -0.4 5,454,215 - +0.6 5,454,311 - +0.4 5,454,345 + -1.2 5,454,345 + -0.3 5,454,345 + -0.1 5,454,345 + -0.1 5,454,346 - -1.9 5,454,346 - -0.5 5,454,346 - -0.2 5,454,348 + -0.9 5,454,349 - +0.9 5,454,349 - -1.2 5,454,349 - +0.1 5,454,393 + +0.3 5,454,393 + +1.4 5,454,394 - -1.4 5,454,525 + AO353_24750 0.13 +1.8 5,454,535 + AO353_24750 0.13 +0.7 5,454,633 - AO353_24750 0.19 -0.1 5,454,633 - AO353_24750 0.19 -0.1
Or see this region's nucleotide sequence