Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24105

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24095 and AO353_24100 are separated by 66 nucleotidesAO353_24100 and AO353_24105 are separated by 40 nucleotidesAO353_24105 and AO353_24110 are separated by 267 nucleotides AO353_24095: AO353_24095 - multidrug DMT transporter permease, at 5,304,095 to 5,304,994 _24095 AO353_24100: AO353_24100 - hypothetical protein, at 5,305,061 to 5,305,318 _24100 AO353_24105: AO353_24105 - LysR family transcriptional regulator, at 5,305,359 to 5,306,273 _24105 AO353_24110: AO353_24110 - alcohol dehydrogenase, at 5,306,541 to 5,307,563 _24110 Position (kb) 5305 5306 5307Strain fitness (log2 ratio) -2 -1 0 1 2at 5304.371 kb on - strand, within AO353_24095at 5304.392 kb on + strand, within AO353_24095at 5304.393 kb on - strand, within AO353_24095at 5304.546 kb on - strand, within AO353_24095at 5304.587 kb on + strand, within AO353_24095at 5304.627 kb on + strand, within AO353_24095at 5304.731 kb on + strand, within AO353_24095at 5304.732 kb on - strand, within AO353_24095at 5304.732 kb on - strand, within AO353_24095at 5304.732 kb on - strand, within AO353_24095at 5304.782 kb on + strand, within AO353_24095at 5304.782 kb on + strand, within AO353_24095at 5304.783 kb on - strand, within AO353_24095at 5304.783 kb on - strand, within AO353_24095at 5304.783 kb on - strand, within AO353_24095at 5304.837 kb on - strand, within AO353_24095at 5304.992 kb on + strandat 5305.013 kb on - strandat 5305.236 kb on + strand, within AO353_24100at 5305.237 kb on - strand, within AO353_24100at 5305.305 kb on - strandat 5305.305 kb on - strandat 5305.404 kb on + strandat 5305.531 kb on + strand, within AO353_24105at 5305.767 kb on + strand, within AO353_24105at 5305.807 kb on + strand, within AO353_24105at 5305.808 kb on - strand, within AO353_24105at 5305.808 kb on - strand, within AO353_24105at 5305.808 kb on - strand, within AO353_24105at 5305.857 kb on + strand, within AO353_24105at 5305.857 kb on + strand, within AO353_24105at 5305.857 kb on + strand, within AO353_24105at 5305.857 kb on + strand, within AO353_24105at 5305.858 kb on - strand, within AO353_24105at 5305.858 kb on - strand, within AO353_24105at 5305.858 kb on - strand, within AO353_24105at 5305.858 kb on - strand, within AO353_24105at 5305.861 kb on + strand, within AO353_24105at 5305.861 kb on + strand, within AO353_24105at 5305.861 kb on + strand, within AO353_24105at 5305.861 kb on + strand, within AO353_24105at 5305.861 kb on + strand, within AO353_24105at 5305.861 kb on + strand, within AO353_24105at 5305.861 kb on + strand, within AO353_24105at 5305.861 kb on + strand, within AO353_24105at 5305.861 kb on + strand, within AO353_24105at 5305.862 kb on - strand, within AO353_24105at 5305.862 kb on - strand, within AO353_24105at 5305.862 kb on - strand, within AO353_24105at 5305.862 kb on - strand, within AO353_24105at 5305.862 kb on - strand, within AO353_24105at 5305.862 kb on - strand, within AO353_24105at 5306.087 kb on + strand, within AO353_24105at 5306.088 kb on - strand, within AO353_24105at 5306.090 kb on + strand, within AO353_24105at 5306.090 kb on + strand, within AO353_24105at 5306.091 kb on - strand, within AO353_24105at 5306.091 kb on - strand, within AO353_24105at 5306.091 kb on - strand, within AO353_24105at 5306.091 kb on - strand, within AO353_24105at 5306.091 kb on - strand, within AO353_24105at 5306.265 kb on - strandat 5306.316 kb on + strandat 5306.316 kb on + strandat 5306.316 kb on + strandat 5306.316 kb on + strandat 5306.316 kb on + strandat 5306.317 kb on - strandat 5306.317 kb on - strandat 5306.343 kb on + strandat 5306.359 kb on + strandat 5306.359 kb on + strandat 5306.374 kb on - strandat 5306.408 kb on + strandat 5306.408 kb on + strandat 5306.422 kb on + strandat 5306.422 kb on + strandat 5306.422 kb on + strandat 5306.461 kb on + strandat 5306.461 kb on + strandat 5306.464 kb on + strandat 5306.464 kb on + strandat 5306.464 kb on + strandat 5306.464 kb on + strandat 5306.464 kb on + strandat 5306.500 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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5,304,371 - AO353_24095 0.31 +0.1
5,304,392 + AO353_24095 0.33 +0.3
5,304,393 - AO353_24095 0.33 -1.0
5,304,546 - AO353_24095 0.50 +0.1
5,304,587 + AO353_24095 0.55 +0.1
5,304,627 + AO353_24095 0.59 +0.6
5,304,731 + AO353_24095 0.71 -1.4
5,304,732 - AO353_24095 0.71 -0.2
5,304,732 - AO353_24095 0.71 +0.4
5,304,732 - AO353_24095 0.71 -1.2
5,304,782 + AO353_24095 0.76 +1.5
5,304,782 + AO353_24095 0.76 +0.9
5,304,783 - AO353_24095 0.76 -0.7
5,304,783 - AO353_24095 0.76 +1.7
5,304,783 - AO353_24095 0.76 +0.8
5,304,837 - AO353_24095 0.82 +0.1
5,304,992 + +0.6
5,305,013 - +0.8
5,305,236 + AO353_24100 0.68 +1.6
5,305,237 - AO353_24100 0.68 +0.9
5,305,305 - -0.1
5,305,305 - +1.1
5,305,404 + -0.2
5,305,531 + AO353_24105 0.19 +1.4
5,305,767 + AO353_24105 0.45 +0.6
5,305,807 + AO353_24105 0.49 +0.7
5,305,808 - AO353_24105 0.49 +1.4
5,305,808 - AO353_24105 0.49 -0.8
5,305,808 - AO353_24105 0.49 +0.5
5,305,857 + AO353_24105 0.54 +0.9
5,305,857 + AO353_24105 0.54 +1.3
5,305,857 + AO353_24105 0.54 +1.0
5,305,857 + AO353_24105 0.54 -0.9
5,305,858 - AO353_24105 0.55 +0.2
5,305,858 - AO353_24105 0.55 -2.1
5,305,858 - AO353_24105 0.55 +0.1
5,305,858 - AO353_24105 0.55 +0.4
5,305,861 + AO353_24105 0.55 -0.5
5,305,861 + AO353_24105 0.55 +0.8
5,305,861 + AO353_24105 0.55 -2.4
5,305,861 + AO353_24105 0.55 -0.4
5,305,861 + AO353_24105 0.55 +0.6
5,305,861 + AO353_24105 0.55 +1.4
5,305,861 + AO353_24105 0.55 -2.5
5,305,861 + AO353_24105 0.55 +0.2
5,305,861 + AO353_24105 0.55 +0.7
5,305,862 - AO353_24105 0.55 -1.6
5,305,862 - AO353_24105 0.55 +0.5
5,305,862 - AO353_24105 0.55 +0.1
5,305,862 - AO353_24105 0.55 -0.6
5,305,862 - AO353_24105 0.55 +0.7
5,305,862 - AO353_24105 0.55 +0.2
5,306,087 + AO353_24105 0.80 +0.6
5,306,088 - AO353_24105 0.80 -0.1
5,306,090 + AO353_24105 0.80 +0.4
5,306,090 + AO353_24105 0.80 -1.2
5,306,091 - AO353_24105 0.80 -0.7
5,306,091 - AO353_24105 0.80 +0.5
5,306,091 - AO353_24105 0.80 +0.2
5,306,091 - AO353_24105 0.80 +0.1
5,306,091 - AO353_24105 0.80 +0.1
5,306,265 - +0.4
5,306,316 + +0.4
5,306,316 + +0.4
5,306,316 + +2.2
5,306,316 + +0.7
5,306,316 + -0.2
5,306,317 - -0.2
5,306,317 - -2.7
5,306,343 + +0.8
5,306,359 + +0.6
5,306,359 + -0.2
5,306,374 - +1.4
5,306,408 + -1.8
5,306,408 + +1.4
5,306,422 + +0.4
5,306,422 + -0.1
5,306,422 + +1.0
5,306,461 + -1.7
5,306,461 + +0.8
5,306,464 + +2.4
5,306,464 + +0.8
5,306,464 + +2.1
5,306,464 + -2.1
5,306,464 + +0.1
5,306,500 + -0.5

Or see this region's nucleotide sequence