Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23765

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23760 and AO353_23765 overlap by 4 nucleotidesAO353_23765 and AO353_23770 overlap by 4 nucleotides AO353_23760: AO353_23760 - maltooligosyl trehalose synthase, at 5,208,755 to 5,211,541 _23760 AO353_23765: AO353_23765 - 4-alpha-glucanotransferase, at 5,211,538 to 5,213,619 _23765 AO353_23770: AO353_23770 - malto-oligosyltrehalose trehalohydrolase, at 5,213,616 to 5,215,421 _23770 Position (kb) 5211 5212 5213 5214Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5210.626 kb on + strand, within AO353_23760at 5210.626 kb on + strand, within AO353_23760at 5210.627 kb on - strand, within AO353_23760at 5210.855 kb on - strand, within AO353_23760at 5210.901 kb on + strand, within AO353_23760at 5210.930 kb on + strand, within AO353_23760at 5210.930 kb on + strand, within AO353_23760at 5210.930 kb on + strand, within AO353_23760at 5210.931 kb on - strand, within AO353_23760at 5211.125 kb on + strand, within AO353_23760at 5211.125 kb on + strand, within AO353_23760at 5211.125 kb on + strand, within AO353_23760at 5211.125 kb on + strand, within AO353_23760at 5211.126 kb on - strand, within AO353_23760at 5211.126 kb on - strand, within AO353_23760at 5211.183 kb on + strand, within AO353_23760at 5211.417 kb on + strandat 5211.417 kb on + strandat 5211.417 kb on + strandat 5211.418 kb on - strandat 5211.418 kb on - strandat 5211.418 kb on - strandat 5211.448 kb on - strandat 5212.190 kb on + strand, within AO353_23765at 5212.190 kb on + strand, within AO353_23765at 5212.190 kb on + strand, within AO353_23765at 5212.190 kb on + strand, within AO353_23765at 5212.191 kb on - strand, within AO353_23765at 5212.191 kb on - strand, within AO353_23765at 5212.191 kb on - strand, within AO353_23765at 5212.191 kb on - strand, within AO353_23765at 5212.197 kb on - strand, within AO353_23765at 5212.197 kb on - strand, within AO353_23765at 5212.426 kb on + strand, within AO353_23765at 5212.427 kb on - strand, within AO353_23765at 5212.574 kb on + strand, within AO353_23765at 5212.574 kb on + strand, within AO353_23765at 5212.609 kb on + strand, within AO353_23765at 5212.802 kb on + strand, within AO353_23765at 5212.802 kb on + strand, within AO353_23765at 5212.803 kb on - strand, within AO353_23765at 5212.956 kb on - strand, within AO353_23765at 5212.956 kb on - strand, within AO353_23765at 5212.956 kb on - strand, within AO353_23765at 5213.141 kb on + strand, within AO353_23765at 5213.142 kb on - strand, within AO353_23765at 5213.142 kb on - strand, within AO353_23765at 5213.142 kb on - strand, within AO353_23765at 5213.142 kb on - strand, within AO353_23765at 5213.143 kb on + strand, within AO353_23765at 5213.143 kb on + strand, within AO353_23765at 5213.143 kb on + strand, within AO353_23765at 5213.143 kb on + strand, within AO353_23765at 5213.144 kb on - strand, within AO353_23765at 5213.144 kb on - strand, within AO353_23765at 5213.144 kb on - strand, within AO353_23765at 5213.144 kb on - strand, within AO353_23765at 5213.287 kb on + strand, within AO353_23765at 5213.287 kb on + strand, within AO353_23765at 5213.287 kb on + strand, within AO353_23765at 5213.288 kb on - strand, within AO353_23765at 5213.288 kb on - strand, within AO353_23765at 5213.305 kb on + strand, within AO353_23765at 5213.305 kb on + strand, within AO353_23765at 5213.306 kb on - strand, within AO353_23765at 5213.306 kb on - strand, within AO353_23765at 5213.306 kb on - strand, within AO353_23765at 5213.306 kb on - strand, within AO353_23765at 5213.306 kb on - strand, within AO353_23765at 5213.306 kb on - strand, within AO353_23765at 5213.478 kb on + strandat 5213.822 kb on + strand, within AO353_23770at 5213.823 kb on - strand, within AO353_23770at 5213.823 kb on - strand, within AO353_23770at 5213.839 kb on - strand, within AO353_23770at 5214.154 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.363 kb on - strand, within AO353_23770at 5214.436 kb on + strand, within AO353_23770at 5214.436 kb on + strand, within AO353_23770at 5214.436 kb on + strand, within AO353_23770at 5214.437 kb on - strand, within AO353_23770at 5214.439 kb on + strand, within AO353_23770at 5214.439 kb on + strand, within AO353_23770at 5214.439 kb on + strand, within AO353_23770at 5214.439 kb on + strand, within AO353_23770at 5214.439 kb on + strand, within AO353_23770at 5214.440 kb on - strand, within AO353_23770at 5214.440 kb on - strand, within AO353_23770at 5214.440 kb on - strand, within AO353_23770

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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5,210,626 + AO353_23760 0.67 -0.6
5,210,626 + AO353_23760 0.67 +3.4
5,210,627 - AO353_23760 0.67 +1.7
5,210,855 - AO353_23760 0.75 +2.7
5,210,901 + AO353_23760 0.77 -0.1
5,210,930 + AO353_23760 0.78 -0.4
5,210,930 + AO353_23760 0.78 +1.4
5,210,930 + AO353_23760 0.78 -0.0
5,210,931 - AO353_23760 0.78 +2.2
5,211,125 + AO353_23760 0.85 -1.4
5,211,125 + AO353_23760 0.85 -1.7
5,211,125 + AO353_23760 0.85 +1.2
5,211,125 + AO353_23760 0.85 -1.6
5,211,126 - AO353_23760 0.85 -2.1
5,211,126 - AO353_23760 0.85 -1.4
5,211,183 + AO353_23760 0.87 -0.4
5,211,417 + -1.2
5,211,417 + -0.1
5,211,417 + +2.4
5,211,418 - -0.3
5,211,418 - +1.4
5,211,418 - -0.6
5,211,448 - -0.3
5,212,190 + AO353_23765 0.31 -1.1
5,212,190 + AO353_23765 0.31 -0.2
5,212,190 + AO353_23765 0.31 -1.2
5,212,190 + AO353_23765 0.31 -0.9
5,212,191 - AO353_23765 0.31 -0.3
5,212,191 - AO353_23765 0.31 +0.9
5,212,191 - AO353_23765 0.31 -0.5
5,212,191 - AO353_23765 0.31 +1.6
5,212,197 - AO353_23765 0.32 -0.4
5,212,197 - AO353_23765 0.32 -0.0
5,212,426 + AO353_23765 0.43 +0.4
5,212,427 - AO353_23765 0.43 -0.0
5,212,574 + AO353_23765 0.50 +0.2
5,212,574 + AO353_23765 0.50 -0.6
5,212,609 + AO353_23765 0.51 +0.4
5,212,802 + AO353_23765 0.61 -0.3
5,212,802 + AO353_23765 0.61 +0.8
5,212,803 - AO353_23765 0.61 -2.1
5,212,956 - AO353_23765 0.68 -0.6
5,212,956 - AO353_23765 0.68 +0.4
5,212,956 - AO353_23765 0.68 -2.9
5,213,141 + AO353_23765 0.77 +0.9
5,213,142 - AO353_23765 0.77 -0.4
5,213,142 - AO353_23765 0.77 +1.4
5,213,142 - AO353_23765 0.77 +0.7
5,213,142 - AO353_23765 0.77 +0.4
5,213,143 + AO353_23765 0.77 +0.4
5,213,143 + AO353_23765 0.77 -1.4
5,213,143 + AO353_23765 0.77 +0.9
5,213,143 + AO353_23765 0.77 +0.4
5,213,144 - AO353_23765 0.77 -1.4
5,213,144 - AO353_23765 0.77 -0.8
5,213,144 - AO353_23765 0.77 -0.2
5,213,144 - AO353_23765 0.77 +0.7
5,213,287 + AO353_23765 0.84 +1.5
5,213,287 + AO353_23765 0.84 -0.1
5,213,287 + AO353_23765 0.84 +0.5
5,213,288 - AO353_23765 0.84 -0.2
5,213,288 - AO353_23765 0.84 -0.1
5,213,305 + AO353_23765 0.85 +0.7
5,213,305 + AO353_23765 0.85 -0.6
5,213,306 - AO353_23765 0.85 +0.8
5,213,306 - AO353_23765 0.85 -0.8
5,213,306 - AO353_23765 0.85 +1.0
5,213,306 - AO353_23765 0.85 +0.2
5,213,306 - AO353_23765 0.85 +0.6
5,213,306 - AO353_23765 0.85 -1.5
5,213,478 + +0.9
5,213,822 + AO353_23770 0.11 +0.9
5,213,823 - AO353_23770 0.11 +0.0
5,213,823 - AO353_23770 0.11 +0.9
5,213,839 - AO353_23770 0.12 +1.1
5,214,154 + AO353_23770 0.30 -2.2
5,214,200 + AO353_23770 0.32 -1.4
5,214,200 + AO353_23770 0.32 +0.3
5,214,200 + AO353_23770 0.32 -1.2
5,214,200 + AO353_23770 0.32 -0.8
5,214,200 + AO353_23770 0.32 +0.3
5,214,200 + AO353_23770 0.32 -0.7
5,214,200 + AO353_23770 0.32 -1.4
5,214,200 + AO353_23770 0.32 +0.2
5,214,200 + AO353_23770 0.32 -1.1
5,214,200 + AO353_23770 0.32 +1.4
5,214,200 + AO353_23770 0.32 -2.4
5,214,200 + AO353_23770 0.32 +1.9
5,214,201 - AO353_23770 0.32 -0.4
5,214,201 - AO353_23770 0.32 +0.7
5,214,201 - AO353_23770 0.32 -0.8
5,214,201 - AO353_23770 0.32 +0.4
5,214,201 - AO353_23770 0.32 +1.1
5,214,201 - AO353_23770 0.32 -0.4
5,214,201 - AO353_23770 0.32 -1.2
5,214,201 - AO353_23770 0.32 -1.8
5,214,201 - AO353_23770 0.32 +0.3
5,214,201 - AO353_23770 0.32 -0.2
5,214,363 - AO353_23770 0.41 +0.3
5,214,436 + AO353_23770 0.45 -2.4
5,214,436 + AO353_23770 0.45 -0.2
5,214,436 + AO353_23770 0.45 -1.6
5,214,437 - AO353_23770 0.45 -1.1
5,214,439 + AO353_23770 0.46 -1.9
5,214,439 + AO353_23770 0.46 -0.9
5,214,439 + AO353_23770 0.46 -0.8
5,214,439 + AO353_23770 0.46 -2.8
5,214,439 + AO353_23770 0.46 -1.7
5,214,440 - AO353_23770 0.46 +1.4
5,214,440 - AO353_23770 0.46 -2.2
5,214,440 - AO353_23770 0.46 +0.5

Or see this region's nucleotide sequence