Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23725

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23720 and AO353_23725 overlap by 8 nucleotidesAO353_23725 and AO353_23730 overlap by 4 nucleotidesAO353_23730 and AO353_23735 are separated by 5 nucleotides AO353_23720: AO353_23720 - BatB protein, at 5,200,072 to 5,201,148 _23720 AO353_23725: AO353_23725 - hypothetical protein, at 5,201,141 to 5,201,635 _23725 AO353_23730: AO353_23730 - hypothetical protein, at 5,201,632 to 5,202,576 _23730 AO353_23735: AO353_23735 - AAA family ATPase, at 5,202,582 to 5,203,541 _23735 Position (kb) 5201 5202Strain fitness (log2 ratio) -2 -1 0 1at 5200.238 kb on + strand, within AO353_23720at 5200.238 kb on + strand, within AO353_23720at 5200.239 kb on - strand, within AO353_23720at 5200.239 kb on - strand, within AO353_23720at 5200.239 kb on - strand, within AO353_23720at 5200.346 kb on + strand, within AO353_23720at 5200.671 kb on + strand, within AO353_23720at 5200.672 kb on - strand, within AO353_23720at 5200.712 kb on + strand, within AO353_23720at 5200.712 kb on + strand, within AO353_23720at 5200.713 kb on - strand, within AO353_23720at 5200.713 kb on - strand, within AO353_23720at 5201.223 kb on + strand, within AO353_23725at 5201.223 kb on + strand, within AO353_23725at 5201.223 kb on + strand, within AO353_23725at 5201.223 kb on + strand, within AO353_23725at 5201.223 kb on + strand, within AO353_23725at 5201.224 kb on - strand, within AO353_23725at 5201.224 kb on - strand, within AO353_23725at 5201.224 kb on - strand, within AO353_23725at 5201.224 kb on - strand, within AO353_23725at 5201.224 kb on - strand, within AO353_23725at 5201.224 kb on - strand, within AO353_23725at 5201.299 kb on + strandat 5201.329 kb on - strand, within AO353_23725at 5201.406 kb on + strand, within AO353_23725at 5201.482 kb on + strand, within AO353_23725at 5201.483 kb on - strand, within AO353_23725at 5201.501 kb on - strand, within AO353_23725at 5201.501 kb on - strand, within AO353_23725at 5201.552 kb on + strand, within AO353_23725at 5201.666 kb on + strandat 5201.666 kb on + strandat 5201.666 kb on + strandat 5201.667 kb on - strandat 5201.700 kb on + strandat 5202.159 kb on - strand, within AO353_23730at 5202.159 kb on - strand, within AO353_23730at 5202.159 kb on - strand, within AO353_23730at 5202.396 kb on - strand, within AO353_23730at 5202.396 kb on - strand, within AO353_23730at 5202.396 kb on - strand, within AO353_23730at 5202.396 kb on - strand, within AO353_23730

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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5,200,238 + AO353_23720 0.15 -0.6
5,200,238 + AO353_23720 0.15 -0.6
5,200,239 - AO353_23720 0.16 -0.8
5,200,239 - AO353_23720 0.16 -0.9
5,200,239 - AO353_23720 0.16 -0.6
5,200,346 + AO353_23720 0.25 -1.2
5,200,671 + AO353_23720 0.56 -1.4
5,200,672 - AO353_23720 0.56 -1.4
5,200,712 + AO353_23720 0.59 -1.6
5,200,712 + AO353_23720 0.59 -0.2
5,200,713 - AO353_23720 0.60 -1.8
5,200,713 - AO353_23720 0.60 -2.6
5,201,223 + AO353_23725 0.17 -1.4
5,201,223 + AO353_23725 0.17 -1.3
5,201,223 + AO353_23725 0.17 +0.4
5,201,223 + AO353_23725 0.17 -1.6
5,201,223 + AO353_23725 0.17 -0.9
5,201,224 - AO353_23725 0.17 +0.7
5,201,224 - AO353_23725 0.17 -2.2
5,201,224 - AO353_23725 0.17 +0.3
5,201,224 - AO353_23725 0.17 -1.6
5,201,224 - AO353_23725 0.17 +0.2
5,201,224 - AO353_23725 0.17 -1.9
5,201,299 + -1.4
5,201,329 - AO353_23725 0.38 -0.8
5,201,406 + AO353_23725 0.54 -1.3
5,201,482 + AO353_23725 0.69 -0.9
5,201,483 - AO353_23725 0.69 -0.9
5,201,501 - AO353_23725 0.73 -1.4
5,201,501 - AO353_23725 0.73 -0.0
5,201,552 + AO353_23725 0.83 +0.0
5,201,666 + -0.2
5,201,666 + -2.3
5,201,666 + -0.5
5,201,667 - -0.3
5,201,700 + -1.4
5,202,159 - AO353_23730 0.56 -2.2
5,202,159 - AO353_23730 0.56 +0.6
5,202,159 - AO353_23730 0.56 -0.3
5,202,396 - AO353_23730 0.81 +0.1
5,202,396 - AO353_23730 0.81 -1.6
5,202,396 - AO353_23730 0.81 -1.3
5,202,396 - AO353_23730 0.81 -1.2

Or see this region's nucleotide sequence