Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23705 and AO353_23710 are separated by 300 nucleotides AO353_23710 and AO353_23715 overlap by 4 nucleotides
AO353_23705: AO353_23705 - type IV secretion protein Rhs, at 5,194,386 to 5,196,386
_23705
AO353_23710: AO353_23710 - protein BatD, at 5,196,687 to 5,198,327
_23710
AO353_23715: AO353_23715 - hypothetical protein, at 5,198,324 to 5,200,075
_23715
Position (kb)
5196
5197
5198
5199 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5195.705 kb on - strand, within AO353_23705 at 5195.851 kb on - strand, within AO353_23705 at 5195.941 kb on + strand, within AO353_23705 at 5195.942 kb on - strand, within AO353_23705 at 5195.953 kb on + strand, within AO353_23705 at 5195.953 kb on + strand, within AO353_23705 at 5196.087 kb on + strand, within AO353_23705 at 5196.091 kb on + strand, within AO353_23705 at 5196.092 kb on - strand, within AO353_23705 at 5196.163 kb on + strand, within AO353_23705 at 5196.163 kb on + strand, within AO353_23705 at 5196.164 kb on - strand, within AO353_23705 at 5196.164 kb on - strand, within AO353_23705 at 5196.280 kb on + strand at 5196.281 kb on - strand at 5196.318 kb on + strand at 5196.404 kb on + strand at 5196.404 kb on + strand at 5196.463 kb on - strand at 5196.463 kb on - strand at 5196.466 kb on + strand at 5196.466 kb on + strand at 5196.466 kb on + strand at 5196.471 kb on + strand at 5196.471 kb on + strand at 5196.472 kb on - strand at 5196.472 kb on - strand at 5196.525 kb on + strand at 5196.525 kb on + strand at 5196.525 kb on + strand at 5196.526 kb on - strand at 5196.526 kb on - strand at 5196.532 kb on + strand at 5196.563 kb on - strand at 5196.641 kb on + strand at 5196.641 kb on + strand at 5196.641 kb on + strand at 5196.641 kb on + strand at 5196.641 kb on + strand at 5196.641 kb on + strand at 5196.641 kb on + strand at 5196.642 kb on - strand at 5196.642 kb on - strand at 5196.642 kb on - strand at 5196.642 kb on - strand at 5196.642 kb on - strand at 5196.688 kb on + strand at 5196.697 kb on + strand at 5197.484 kb on + strand, within AO353_23710 at 5197.484 kb on + strand, within AO353_23710 at 5197.771 kb on + strand, within AO353_23710 at 5197.772 kb on - strand, within AO353_23710 at 5197.826 kb on + strand, within AO353_23710 at 5197.827 kb on - strand, within AO353_23710 at 5197.844 kb on - strand, within AO353_23710 at 5197.844 kb on - strand, within AO353_23710 at 5197.844 kb on - strand, within AO353_23710 at 5197.861 kb on + strand, within AO353_23710 at 5197.862 kb on - strand, within AO353_23710 at 5197.897 kb on + strand, within AO353_23710 at 5197.897 kb on + strand, within AO353_23710 at 5197.898 kb on - strand, within AO353_23710 at 5197.898 kb on - strand, within AO353_23710 at 5197.898 kb on - strand, within AO353_23710 at 5197.898 kb on - strand, within AO353_23710 at 5198.005 kb on + strand, within AO353_23710 at 5198.005 kb on + strand, within AO353_23710 at 5198.364 kb on + strand at 5198.738 kb on + strand, within AO353_23715 at 5198.739 kb on - strand at 5198.769 kb on - strand, within AO353_23715 at 5198.799 kb on + strand, within AO353_23715 at 5198.800 kb on - strand, within AO353_23715 at 5198.800 kb on - strand, within AO353_23715 at 5198.857 kb on - strand, within AO353_23715 at 5198.857 kb on - strand, within AO353_23715 at 5198.857 kb on - strand, within AO353_23715 at 5198.857 kb on - strand, within AO353_23715 at 5198.857 kb on - strand, within AO353_23715 at 5198.907 kb on + strand, within AO353_23715 at 5198.907 kb on + strand, within AO353_23715 at 5198.908 kb on - strand, within AO353_23715 at 5198.922 kb on + strand, within AO353_23715 at 5198.922 kb on + strand, within AO353_23715 at 5198.922 kb on + strand, within AO353_23715 at 5198.923 kb on - strand, within AO353_23715 at 5199.048 kb on + strand, within AO353_23715 at 5199.147 kb on + strand, within AO353_23715 at 5199.148 kb on - strand, within AO353_23715 at 5199.203 kb on - strand, within AO353_23715 at 5199.296 kb on - strand, within AO353_23715
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 5,195,705 - AO353_23705 0.66 +0.4 5,195,851 - AO353_23705 0.73 +0.2 5,195,941 + AO353_23705 0.78 -0.2 5,195,942 - AO353_23705 0.78 -0.4 5,195,953 + AO353_23705 0.78 -0.2 5,195,953 + AO353_23705 0.78 -2.3 5,196,087 + AO353_23705 0.85 -1.7 5,196,091 + AO353_23705 0.85 -1.9 5,196,092 - AO353_23705 0.85 -1.9 5,196,163 + AO353_23705 0.89 +2.4 5,196,163 + AO353_23705 0.89 +0.4 5,196,164 - AO353_23705 0.89 -0.4 5,196,164 - AO353_23705 0.89 -1.4 5,196,280 + -1.6 5,196,281 - -0.9 5,196,318 + +0.9 5,196,404 + -1.1 5,196,404 + -1.0 5,196,463 - -1.2 5,196,463 - +1.2 5,196,466 + -1.1 5,196,466 + +0.1 5,196,466 + +0.6 5,196,471 + +0.4 5,196,471 + -0.8 5,196,472 - +0.9 5,196,472 - +0.3 5,196,525 + -0.8 5,196,525 + -0.9 5,196,525 + -0.4 5,196,526 - -1.8 5,196,526 - +0.6 5,196,532 + -1.6 5,196,563 - -1.9 5,196,641 + -0.6 5,196,641 + -0.5 5,196,641 + +0.7 5,196,641 + +1.0 5,196,641 + -0.6 5,196,641 + -1.7 5,196,641 + -0.4 5,196,642 - -1.4 5,196,642 - -0.9 5,196,642 - -0.2 5,196,642 - +0.7 5,196,642 - -1.2 5,196,688 + -1.4 5,196,697 + -0.6 5,197,484 + AO353_23710 0.49 -0.4 5,197,484 + AO353_23710 0.49 -0.6 5,197,771 + AO353_23710 0.66 -0.6 5,197,772 - AO353_23710 0.66 +0.1 5,197,826 + AO353_23710 0.69 -1.8 5,197,827 - AO353_23710 0.69 -2.5 5,197,844 - AO353_23710 0.71 -1.8 5,197,844 - AO353_23710 0.71 -1.4 5,197,844 - AO353_23710 0.71 +0.1 5,197,861 + AO353_23710 0.72 -1.5 5,197,862 - AO353_23710 0.72 -1.2 5,197,897 + AO353_23710 0.74 -0.9 5,197,897 + AO353_23710 0.74 +0.9 5,197,898 - AO353_23710 0.74 -1.2 5,197,898 - AO353_23710 0.74 -1.1 5,197,898 - AO353_23710 0.74 -2.5 5,197,898 - AO353_23710 0.74 -1.2 5,198,005 + AO353_23710 0.80 -1.8 5,198,005 + AO353_23710 0.80 -0.6 5,198,364 + -1.1 5,198,738 + AO353_23715 0.24 -2.2 5,198,739 - -0.2 5,198,769 - AO353_23715 0.25 -1.2 5,198,799 + AO353_23715 0.27 -1.5 5,198,800 - AO353_23715 0.27 -1.9 5,198,800 - AO353_23715 0.27 -1.8 5,198,857 - AO353_23715 0.30 -1.5 5,198,857 - AO353_23715 0.30 -0.6 5,198,857 - AO353_23715 0.30 -1.8 5,198,857 - AO353_23715 0.30 -2.1 5,198,857 - AO353_23715 0.30 -0.7 5,198,907 + AO353_23715 0.33 -0.4 5,198,907 + AO353_23715 0.33 -1.7 5,198,908 - AO353_23715 0.33 -1.5 5,198,922 + AO353_23715 0.34 -0.7 5,198,922 + AO353_23715 0.34 -2.8 5,198,922 + AO353_23715 0.34 -1.8 5,198,923 - AO353_23715 0.34 -1.2 5,199,048 + AO353_23715 0.41 -1.1 5,199,147 + AO353_23715 0.47 -0.6 5,199,148 - AO353_23715 0.47 -1.8 5,199,203 - AO353_23715 0.50 -2.1 5,199,296 - AO353_23715 0.55 -1.8
Or see this region's nucleotide sequence