Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23710

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23705 and AO353_23710 are separated by 300 nucleotidesAO353_23710 and AO353_23715 overlap by 4 nucleotides AO353_23705: AO353_23705 - type IV secretion protein Rhs, at 5,194,386 to 5,196,386 _23705 AO353_23710: AO353_23710 - protein BatD, at 5,196,687 to 5,198,327 _23710 AO353_23715: AO353_23715 - hypothetical protein, at 5,198,324 to 5,200,075 _23715 Position (kb) 5196 5197 5198 5199Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5195.705 kb on - strand, within AO353_23705at 5195.851 kb on - strand, within AO353_23705at 5195.941 kb on + strand, within AO353_23705at 5195.942 kb on - strand, within AO353_23705at 5195.953 kb on + strand, within AO353_23705at 5195.953 kb on + strand, within AO353_23705at 5196.087 kb on + strand, within AO353_23705at 5196.091 kb on + strand, within AO353_23705at 5196.092 kb on - strand, within AO353_23705at 5196.163 kb on + strand, within AO353_23705at 5196.163 kb on + strand, within AO353_23705at 5196.164 kb on - strand, within AO353_23705at 5196.164 kb on - strand, within AO353_23705at 5196.280 kb on + strandat 5196.281 kb on - strandat 5196.318 kb on + strandat 5196.404 kb on + strandat 5196.404 kb on + strandat 5196.463 kb on - strandat 5196.463 kb on - strandat 5196.466 kb on + strandat 5196.466 kb on + strandat 5196.466 kb on + strandat 5196.471 kb on + strandat 5196.471 kb on + strandat 5196.472 kb on - strandat 5196.472 kb on - strandat 5196.525 kb on + strandat 5196.525 kb on + strandat 5196.525 kb on + strandat 5196.526 kb on - strandat 5196.526 kb on - strandat 5196.532 kb on + strandat 5196.563 kb on - strandat 5196.641 kb on + strandat 5196.641 kb on + strandat 5196.641 kb on + strandat 5196.641 kb on + strandat 5196.641 kb on + strandat 5196.641 kb on + strandat 5196.641 kb on + strandat 5196.642 kb on - strandat 5196.642 kb on - strandat 5196.642 kb on - strandat 5196.642 kb on - strandat 5196.642 kb on - strandat 5196.688 kb on + strandat 5196.697 kb on + strandat 5197.484 kb on + strand, within AO353_23710at 5197.484 kb on + strand, within AO353_23710at 5197.771 kb on + strand, within AO353_23710at 5197.772 kb on - strand, within AO353_23710at 5197.826 kb on + strand, within AO353_23710at 5197.827 kb on - strand, within AO353_23710at 5197.844 kb on - strand, within AO353_23710at 5197.844 kb on - strand, within AO353_23710at 5197.844 kb on - strand, within AO353_23710at 5197.861 kb on + strand, within AO353_23710at 5197.862 kb on - strand, within AO353_23710at 5197.897 kb on + strand, within AO353_23710at 5197.897 kb on + strand, within AO353_23710at 5197.898 kb on - strand, within AO353_23710at 5197.898 kb on - strand, within AO353_23710at 5197.898 kb on - strand, within AO353_23710at 5197.898 kb on - strand, within AO353_23710at 5198.005 kb on + strand, within AO353_23710at 5198.005 kb on + strand, within AO353_23710at 5198.364 kb on + strandat 5198.738 kb on + strand, within AO353_23715at 5198.739 kb on - strandat 5198.769 kb on - strand, within AO353_23715at 5198.799 kb on + strand, within AO353_23715at 5198.800 kb on - strand, within AO353_23715at 5198.800 kb on - strand, within AO353_23715at 5198.857 kb on - strand, within AO353_23715at 5198.857 kb on - strand, within AO353_23715at 5198.857 kb on - strand, within AO353_23715at 5198.857 kb on - strand, within AO353_23715at 5198.857 kb on - strand, within AO353_23715at 5198.907 kb on + strand, within AO353_23715at 5198.907 kb on + strand, within AO353_23715at 5198.908 kb on - strand, within AO353_23715at 5198.922 kb on + strand, within AO353_23715at 5198.922 kb on + strand, within AO353_23715at 5198.922 kb on + strand, within AO353_23715at 5198.923 kb on - strand, within AO353_23715at 5199.048 kb on + strand, within AO353_23715at 5199.147 kb on + strand, within AO353_23715at 5199.148 kb on - strand, within AO353_23715at 5199.203 kb on - strand, within AO353_23715at 5199.296 kb on - strand, within AO353_23715

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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5,195,705 - AO353_23705 0.66 +0.4
5,195,851 - AO353_23705 0.73 +0.2
5,195,941 + AO353_23705 0.78 -0.2
5,195,942 - AO353_23705 0.78 -0.4
5,195,953 + AO353_23705 0.78 -0.2
5,195,953 + AO353_23705 0.78 -2.3
5,196,087 + AO353_23705 0.85 -1.7
5,196,091 + AO353_23705 0.85 -1.9
5,196,092 - AO353_23705 0.85 -1.9
5,196,163 + AO353_23705 0.89 +2.4
5,196,163 + AO353_23705 0.89 +0.4
5,196,164 - AO353_23705 0.89 -0.4
5,196,164 - AO353_23705 0.89 -1.4
5,196,280 + -1.6
5,196,281 - -0.9
5,196,318 + +0.9
5,196,404 + -1.1
5,196,404 + -1.0
5,196,463 - -1.2
5,196,463 - +1.2
5,196,466 + -1.1
5,196,466 + +0.1
5,196,466 + +0.6
5,196,471 + +0.4
5,196,471 + -0.8
5,196,472 - +0.9
5,196,472 - +0.3
5,196,525 + -0.8
5,196,525 + -0.9
5,196,525 + -0.4
5,196,526 - -1.8
5,196,526 - +0.6
5,196,532 + -1.6
5,196,563 - -1.9
5,196,641 + -0.6
5,196,641 + -0.5
5,196,641 + +0.7
5,196,641 + +1.0
5,196,641 + -0.6
5,196,641 + -1.7
5,196,641 + -0.4
5,196,642 - -1.4
5,196,642 - -0.9
5,196,642 - -0.2
5,196,642 - +0.7
5,196,642 - -1.2
5,196,688 + -1.4
5,196,697 + -0.6
5,197,484 + AO353_23710 0.49 -0.4
5,197,484 + AO353_23710 0.49 -0.6
5,197,771 + AO353_23710 0.66 -0.6
5,197,772 - AO353_23710 0.66 +0.1
5,197,826 + AO353_23710 0.69 -1.8
5,197,827 - AO353_23710 0.69 -2.5
5,197,844 - AO353_23710 0.71 -1.8
5,197,844 - AO353_23710 0.71 -1.4
5,197,844 - AO353_23710 0.71 +0.1
5,197,861 + AO353_23710 0.72 -1.5
5,197,862 - AO353_23710 0.72 -1.2
5,197,897 + AO353_23710 0.74 -0.9
5,197,897 + AO353_23710 0.74 +0.9
5,197,898 - AO353_23710 0.74 -1.2
5,197,898 - AO353_23710 0.74 -1.1
5,197,898 - AO353_23710 0.74 -2.5
5,197,898 - AO353_23710 0.74 -1.2
5,198,005 + AO353_23710 0.80 -1.8
5,198,005 + AO353_23710 0.80 -0.6
5,198,364 + -1.1
5,198,738 + AO353_23715 0.24 -2.2
5,198,739 - -0.2
5,198,769 - AO353_23715 0.25 -1.2
5,198,799 + AO353_23715 0.27 -1.5
5,198,800 - AO353_23715 0.27 -1.9
5,198,800 - AO353_23715 0.27 -1.8
5,198,857 - AO353_23715 0.30 -1.5
5,198,857 - AO353_23715 0.30 -0.6
5,198,857 - AO353_23715 0.30 -1.8
5,198,857 - AO353_23715 0.30 -2.1
5,198,857 - AO353_23715 0.30 -0.7
5,198,907 + AO353_23715 0.33 -0.4
5,198,907 + AO353_23715 0.33 -1.7
5,198,908 - AO353_23715 0.33 -1.5
5,198,922 + AO353_23715 0.34 -0.7
5,198,922 + AO353_23715 0.34 -2.8
5,198,922 + AO353_23715 0.34 -1.8
5,198,923 - AO353_23715 0.34 -1.2
5,199,048 + AO353_23715 0.41 -1.1
5,199,147 + AO353_23715 0.47 -0.6
5,199,148 - AO353_23715 0.47 -1.8
5,199,203 - AO353_23715 0.50 -2.1
5,199,296 - AO353_23715 0.55 -1.8

Or see this region's nucleotide sequence