Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23155 and AO353_23160 overlap by 10 nucleotides AO353_23160 and AO353_23165 are separated by 4 nucleotides AO353_23165 and AO353_23170 are separated by 13 nucleotides AO353_23170 and AO353_23175 overlap by 1 nucleotides
AO353_23155: AO353_23155 - IclR family transcriptional regulator, at 5,081,390 to 5,082,232
_23155
AO353_23160: AO353_23160 - hydrolase, at 5,082,223 to 5,083,107
_23160
AO353_23165: AO353_23165 - cupin, at 5,083,112 to 5,083,675
_23165
AO353_23170: AO353_23170 - short-chain dehydrogenase, at 5,083,689 to 5,084,453
_23170
AO353_23175: AO353_23175 - ABC transporter permease, at 5,084,453 to 5,085,229
_23175
Position (kb)
5083
5084 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.187 kb on - strand at 5082.187 kb on - strand at 5082.187 kb on - strand at 5082.187 kb on - strand at 5082.187 kb on - strand at 5082.187 kb on - strand at 5082.187 kb on - strand at 5082.187 kb on - strand at 5082.227 kb on - strand at 5082.466 kb on + strand, within AO353_23160 at 5082.466 kb on + strand, within AO353_23160 at 5082.466 kb on + strand, within AO353_23160 at 5082.466 kb on + strand, within AO353_23160 at 5082.466 kb on + strand, within AO353_23160 at 5082.466 kb on + strand, within AO353_23160 at 5082.466 kb on + strand, within AO353_23160 at 5082.467 kb on - strand, within AO353_23160 at 5082.467 kb on - strand, within AO353_23160 at 5082.558 kb on - strand, within AO353_23160 at 5082.558 kb on - strand, within AO353_23160 at 5082.866 kb on + strand, within AO353_23160 at 5082.925 kb on + strand, within AO353_23160 at 5083.113 kb on + strand at 5083.474 kb on - strand, within AO353_23165 at 5083.474 kb on - strand, within AO353_23165 at 5083.474 kb on - strand, within AO353_23165 at 5083.474 kb on - strand, within AO353_23165 at 5083.474 kb on - strand, within AO353_23165 at 5083.474 kb on - strand, within AO353_23165 at 5083.507 kb on - strand, within AO353_23165 at 5083.539 kb on + strand, within AO353_23165 at 5083.539 kb on + strand, within AO353_23165 at 5083.664 kb on + strand at 5083.664 kb on + strand at 5083.664 kb on + strand at 5083.665 kb on - strand at 5083.665 kb on - strand at 5083.665 kb on - strand at 5083.669 kb on + strand at 5083.669 kb on + strand at 5083.669 kb on + strand at 5083.670 kb on - strand at 5083.670 kb on - strand at 5083.670 kb on - strand at 5083.670 kb on - strand at 5083.670 kb on - strand at 5083.670 kb on - strand at 5083.670 kb on - strand at 5083.699 kb on - strand at 5083.825 kb on + strand, within AO353_23170 at 5083.825 kb on + strand, within AO353_23170 at 5083.852 kb on + strand, within AO353_23170 at 5083.852 kb on + strand, within AO353_23170 at 5083.852 kb on + strand, within AO353_23170 at 5083.852 kb on + strand, within AO353_23170 at 5083.852 kb on + strand, within AO353_23170 at 5083.853 kb on - strand, within AO353_23170 at 5083.973 kb on - strand, within AO353_23170 at 5084.383 kb on + strand at 5084.484 kb on + strand at 5084.484 kb on + strand at 5084.484 kb on + strand at 5084.485 kb on - strand at 5084.485 kb on - strand at 5084.485 kb on - strand at 5084.531 kb on + strand, within AO353_23175 at 5084.531 kb on + strand, within AO353_23175 at 5084.531 kb on + strand, within AO353_23175 at 5084.532 kb on - strand, within AO353_23175 at 5084.532 kb on - strand, within AO353_23175 at 5084.532 kb on - strand, within AO353_23175
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 5,082,186 + -1.7 5,082,186 + -0.4 5,082,186 + -1.7 5,082,186 + -0.9 5,082,186 + -1.2 5,082,186 + +1.7 5,082,186 + +0.5 5,082,186 + -1.7 5,082,186 + -0.5 5,082,186 + +1.5 5,082,186 + +1.1 5,082,186 + -0.5 5,082,187 - +0.5 5,082,187 - -0.1 5,082,187 - -0.8 5,082,187 - +0.1 5,082,187 - -2.1 5,082,187 - -0.7 5,082,187 - +0.3 5,082,187 - +0.3 5,082,227 - -1.2 5,082,466 + AO353_23160 0.27 +0.7 5,082,466 + AO353_23160 0.27 -1.5 5,082,466 + AO353_23160 0.27 -2.7 5,082,466 + AO353_23160 0.27 +1.0 5,082,466 + AO353_23160 0.27 -0.5 5,082,466 + AO353_23160 0.27 -3.2 5,082,466 + AO353_23160 0.27 -0.4 5,082,467 - AO353_23160 0.28 +0.1 5,082,467 - AO353_23160 0.28 -0.1 5,082,558 - AO353_23160 0.38 -3.2 5,082,558 - AO353_23160 0.38 -0.6 5,082,866 + AO353_23160 0.73 -2.2 5,082,925 + AO353_23160 0.79 +0.6 5,083,113 + +0.8 5,083,474 - AO353_23165 0.64 -0.3 5,083,474 - AO353_23165 0.64 -1.1 5,083,474 - AO353_23165 0.64 -0.8 5,083,474 - AO353_23165 0.64 -0.9 5,083,474 - AO353_23165 0.64 +0.0 5,083,474 - AO353_23165 0.64 -1.4 5,083,507 - AO353_23165 0.70 -1.3 5,083,539 + AO353_23165 0.76 -1.3 5,083,539 + AO353_23165 0.76 +0.5 5,083,664 + -0.1 5,083,664 + -0.8 5,083,664 + +0.1 5,083,665 - +1.5 5,083,665 - -0.6 5,083,665 - +0.6 5,083,669 + -0.5 5,083,669 + -0.2 5,083,669 + +1.6 5,083,670 - +0.5 5,083,670 - +1.1 5,083,670 - +1.2 5,083,670 - +0.5 5,083,670 - -1.3 5,083,670 - -0.4 5,083,670 - +0.6 5,083,699 - +1.2 5,083,825 + AO353_23170 0.18 -0.3 5,083,825 + AO353_23170 0.18 +1.1 5,083,852 + AO353_23170 0.21 -0.1 5,083,852 + AO353_23170 0.21 -0.4 5,083,852 + AO353_23170 0.21 -0.5 5,083,852 + AO353_23170 0.21 -1.9 5,083,852 + AO353_23170 0.21 +0.7 5,083,853 - AO353_23170 0.21 -0.5 5,083,973 - AO353_23170 0.37 +0.9 5,084,383 + +0.7 5,084,484 + -1.5 5,084,484 + -2.4 5,084,484 + -0.7 5,084,485 - +0.0 5,084,485 - -0.8 5,084,485 - +0.7 5,084,531 + AO353_23175 0.10 +0.6 5,084,531 + AO353_23175 0.10 -2.0 5,084,531 + AO353_23175 0.10 -0.1 5,084,532 - AO353_23175 0.10 +0.3 5,084,532 - AO353_23175 0.10 -0.5 5,084,532 - AO353_23175 0.10 +0.1
Or see this region's nucleotide sequence