Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22315

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22310 and AO353_22315 are separated by 24 nucleotidesAO353_22315 and AO353_22320 are separated by 333 nucleotidesAO353_22320 and AO353_22325 are separated by 23 nucleotides AO353_22310: AO353_22310 - MFS transporter, at 4,885,784 to 4,887,370 _22310 AO353_22315: AO353_22315 - MFS transporter, at 4,887,395 to 4,888,606 _22315 AO353_22320: AO353_22320 - hypothetical protein, at 4,888,940 to 4,889,125 _22320 AO353_22325: AO353_22325 - short-chain dehydrogenase, at 4,889,149 to 4,889,898 _22325 Position (kb) 4887 4888 4889Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 4886.398 kb on - strand, within AO353_22310at 4886.398 kb on - strand, within AO353_22310at 4886.398 kb on - strand, within AO353_22310at 4886.398 kb on - strand, within AO353_22310at 4886.452 kb on + strand, within AO353_22310at 4886.452 kb on + strand, within AO353_22310at 4886.453 kb on - strand, within AO353_22310at 4886.466 kb on + strand, within AO353_22310at 4886.467 kb on - strand, within AO353_22310at 4886.467 kb on - strand, within AO353_22310at 4886.648 kb on - strand, within AO353_22310at 4886.648 kb on - strand, within AO353_22310at 4886.683 kb on + strand, within AO353_22310at 4886.683 kb on + strand, within AO353_22310at 4886.683 kb on + strand, within AO353_22310at 4886.683 kb on + strand, within AO353_22310at 4886.683 kb on + strand, within AO353_22310at 4886.684 kb on - strand, within AO353_22310at 4886.684 kb on - strand, within AO353_22310at 4886.687 kb on + strand, within AO353_22310at 4886.687 kb on + strand, within AO353_22310at 4886.687 kb on + strand, within AO353_22310at 4886.687 kb on + strand, within AO353_22310at 4886.687 kb on + strand, within AO353_22310at 4886.687 kb on + strand, within AO353_22310at 4886.688 kb on - strand, within AO353_22310at 4886.688 kb on - strand, within AO353_22310at 4886.688 kb on - strand, within AO353_22310at 4886.688 kb on - strand, within AO353_22310at 4886.688 kb on - strand, within AO353_22310at 4886.688 kb on - strandat 4886.688 kb on - strand, within AO353_22310at 4886.688 kb on - strand, within AO353_22310at 4886.688 kb on - strand, within AO353_22310at 4886.729 kb on + strand, within AO353_22310at 4886.729 kb on + strand, within AO353_22310at 4886.730 kb on - strand, within AO353_22310at 4886.779 kb on - strand, within AO353_22310at 4886.850 kb on - strand, within AO353_22310at 4887.098 kb on + strand, within AO353_22310at 4887.099 kb on - strand, within AO353_22310at 4887.261 kb on + strandat 4887.342 kb on + strandat 4887.342 kb on + strandat 4887.342 kb on + strandat 4887.346 kb on + strandat 4887.346 kb on + strandat 4887.346 kb on + strandat 4887.347 kb on - strandat 4887.430 kb on + strandat 4887.430 kb on + strandat 4887.430 kb on + strandat 4887.468 kb on - strandat 4887.468 kb on - strandat 4887.497 kb on + strandat 4887.497 kb on + strandat 4887.553 kb on - strand, within AO353_22315at 4887.553 kb on - strand, within AO353_22315at 4887.564 kb on + strand, within AO353_22315at 4887.564 kb on + strand, within AO353_22315at 4887.564 kb on + strand, within AO353_22315at 4887.565 kb on - strand, within AO353_22315at 4887.565 kb on - strand, within AO353_22315at 4887.565 kb on - strand, within AO353_22315at 4887.565 kb on - strand, within AO353_22315at 4887.565 kb on - strandat 4887.703 kb on - strand, within AO353_22315at 4887.755 kb on + strand, within AO353_22315at 4887.755 kb on + strand, within AO353_22315at 4887.756 kb on - strand, within AO353_22315at 4887.756 kb on - strand, within AO353_22315at 4887.820 kb on - strand, within AO353_22315at 4887.829 kb on + strand, within AO353_22315at 4887.829 kb on + strand, within AO353_22315at 4887.830 kb on - strand, within AO353_22315at 4887.830 kb on - strand, within AO353_22315at 4887.830 kb on - strand, within AO353_22315at 4887.830 kb on - strand, within AO353_22315at 4887.830 kb on - strand, within AO353_22315at 4887.830 kb on - strand, within AO353_22315at 4887.858 kb on - strand, within AO353_22315at 4887.858 kb on - strand, within AO353_22315at 4887.930 kb on - strand, within AO353_22315at 4888.104 kb on - strand, within AO353_22315at 4888.241 kb on + strand, within AO353_22315at 4888.242 kb on - strand, within AO353_22315at 4888.378 kb on + strand, within AO353_22315at 4888.378 kb on + strand, within AO353_22315at 4888.379 kb on - strandat 4888.379 kb on - strand, within AO353_22315at 4888.379 kb on - strand, within AO353_22315at 4888.446 kb on + strand, within AO353_22315at 4888.447 kb on - strand, within AO353_22315at 4888.459 kb on + strand, within AO353_22315at 4888.460 kb on - strand, within AO353_22315at 4888.484 kb on + strand, within AO353_22315at 4888.485 kb on - strandat 4888.501 kb on - strandat 4888.510 kb on - strandat 4888.556 kb on + strandat 4888.556 kb on + strandat 4888.557 kb on - strandat 4888.557 kb on - strandat 4888.557 kb on - strandat 4888.557 kb on - strandat 4888.594 kb on + strandat 4888.595 kb on - strandat 4888.598 kb on + strandat 4888.599 kb on - strandat 4888.599 kb on - strandat 4888.599 kb on - strandat 4888.599 kb on - strandat 4888.660 kb on + strandat 4888.667 kb on + strandat 4888.667 kb on + strandat 4888.667 kb on + strandat 4888.667 kb on + strandat 4888.667 kb on + strandat 4888.667 kb on + strandat 4888.668 kb on - strandat 4888.668 kb on - strandat 4888.668 kb on - strandat 4888.668 kb on - strandat 4888.668 kb on - strandat 4888.705 kb on + strandat 4888.706 kb on - strandat 4888.720 kb on + strandat 4888.720 kb on + strandat 4888.720 kb on + strandat 4888.720 kb on + strandat 4888.720 kb on + strandat 4888.720 kb on + strandat 4888.721 kb on - strandat 4888.721 kb on - strandat 4888.721 kb on - strandat 4888.721 kb on - strandat 4888.721 kb on - strandat 4888.816 kb on + strandat 4888.816 kb on + strandat 4888.816 kb on + strandat 4888.816 kb on + strandat 4888.838 kb on + strandat 4888.838 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.959 kb on - strand, within AO353_22320at 4888.959 kb on - strand, within AO353_22320at 4888.960 kb on + strand, within AO353_22320at 4888.960 kb on + strand, within AO353_22320at 4888.960 kb on + strand, within AO353_22320at 4889.000 kb on + strand, within AO353_22320at 4889.000 kb on + strand, within AO353_22320at 4889.000 kb on + strand, within AO353_22320at 4889.000 kb on + strand, within AO353_22320at 4889.001 kb on - strand, within AO353_22320at 4889.001 kb on - strand, within AO353_22320at 4889.001 kb on - strand, within AO353_22320at 4889.037 kb on + strand, within AO353_22320at 4889.061 kb on + strand, within AO353_22320at 4889.062 kb on - strand, within AO353_22320at 4889.078 kb on + strand, within AO353_22320at 4889.078 kb on + strand, within AO353_22320at 4889.078 kb on + strand, within AO353_22320at 4889.079 kb on - strand, within AO353_22320at 4889.079 kb on - strand, within AO353_22320at 4889.079 kb on - strand, within AO353_22320at 4889.079 kb on - strand, within AO353_22320at 4889.081 kb on + strand, within AO353_22320at 4889.103 kb on + strand, within AO353_22320at 4889.104 kb on - strand, within AO353_22320at 4889.104 kb on - strand, within AO353_22320at 4889.257 kb on + strand, within AO353_22325at 4889.257 kb on + strand, within AO353_22325at 4889.257 kb on + strand, within AO353_22325at 4889.257 kb on + strand, within AO353_22325at 4889.257 kb on + strand, within AO353_22325at 4889.257 kb on + strand, within AO353_22325at 4889.258 kb on - strand, within AO353_22325at 4889.258 kb on - strand, within AO353_22325at 4889.258 kb on - strand, within AO353_22325at 4889.258 kb on - strand, within AO353_22325at 4889.258 kb on - strand, within AO353_22325at 4889.323 kb on + strand, within AO353_22325at 4889.324 kb on - strand, within AO353_22325at 4889.407 kb on - strand, within AO353_22325at 4889.431 kb on + strand, within AO353_22325at 4889.431 kb on + strand, within AO353_22325at 4889.431 kb on + strand, within AO353_22325at 4889.431 kb on + strand, within AO353_22325at 4889.431 kb on + strand, within AO353_22325at 4889.431 kb on + strand, within AO353_22325at 4889.432 kb on - strand, within AO353_22325at 4889.432 kb on - strand, within AO353_22325at 4889.436 kb on + strand, within AO353_22325

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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4,886,398 - AO353_22310 0.39 -1.4
4,886,398 - AO353_22310 0.39 +0.5
4,886,398 - AO353_22310 0.39 -0.4
4,886,398 - AO353_22310 0.39 -1.0
4,886,452 + AO353_22310 0.42 +0.2
4,886,452 + AO353_22310 0.42 -1.8
4,886,453 - AO353_22310 0.42 -0.1
4,886,466 + AO353_22310 0.43 +0.6
4,886,467 - AO353_22310 0.43 +0.1
4,886,467 - AO353_22310 0.43 +0.3
4,886,648 - AO353_22310 0.54 -0.9
4,886,648 - AO353_22310 0.54 +0.8
4,886,683 + AO353_22310 0.57 -0.4
4,886,683 + AO353_22310 0.57 +0.1
4,886,683 + AO353_22310 0.57 -0.3
4,886,683 + AO353_22310 0.57 -1.0
4,886,683 + AO353_22310 0.57 -0.6
4,886,684 - AO353_22310 0.57 +0.1
4,886,684 - AO353_22310 0.57 -1.0
4,886,687 + AO353_22310 0.57 +1.6
4,886,687 + AO353_22310 0.57 +1.1
4,886,687 + AO353_22310 0.57 +1.7
4,886,687 + AO353_22310 0.57 +0.6
4,886,687 + AO353_22310 0.57 -0.8
4,886,687 + AO353_22310 0.57 -0.3
4,886,688 - AO353_22310 0.57 -1.4
4,886,688 - AO353_22310 0.57 -0.2
4,886,688 - AO353_22310 0.57 +0.6
4,886,688 - AO353_22310 0.57 +0.2
4,886,688 - AO353_22310 0.57 +1.0
4,886,688 - +1.6
4,886,688 - AO353_22310 0.57 +0.6
4,886,688 - AO353_22310 0.57 +0.1
4,886,688 - AO353_22310 0.57 -1.1
4,886,729 + AO353_22310 0.60 -0.8
4,886,729 + AO353_22310 0.60 +0.1
4,886,730 - AO353_22310 0.60 -1.8
4,886,779 - AO353_22310 0.63 -0.2
4,886,850 - AO353_22310 0.67 -0.4
4,887,098 + AO353_22310 0.83 +1.1
4,887,099 - AO353_22310 0.83 +1.2
4,887,261 + -1.4
4,887,342 + -0.1
4,887,342 + +0.6
4,887,342 + -1.0
4,887,346 + +0.4
4,887,346 + +1.8
4,887,346 + -2.1
4,887,347 - +0.6
4,887,430 + -1.0
4,887,430 + -0.2
4,887,430 + -0.6
4,887,468 - -0.0
4,887,468 - -0.6
4,887,497 + +0.2
4,887,497 + -1.2
4,887,553 - AO353_22315 0.13 -0.2
4,887,553 - AO353_22315 0.13 -0.0
4,887,564 + AO353_22315 0.14 +1.3
4,887,564 + AO353_22315 0.14 -1.4
4,887,564 + AO353_22315 0.14 -0.2
4,887,565 - AO353_22315 0.14 -0.4
4,887,565 - AO353_22315 0.14 +0.8
4,887,565 - AO353_22315 0.14 -1.2
4,887,565 - AO353_22315 0.14 +1.1
4,887,565 - -1.0
4,887,703 - AO353_22315 0.25 +1.9
4,887,755 + AO353_22315 0.30 -0.3
4,887,755 + AO353_22315 0.30 +1.0
4,887,756 - AO353_22315 0.30 +2.5
4,887,756 - AO353_22315 0.30 -1.4
4,887,820 - AO353_22315 0.35 -0.8
4,887,829 + AO353_22315 0.36 +2.8
4,887,829 + AO353_22315 0.36 +0.7
4,887,830 - AO353_22315 0.36 +1.2
4,887,830 - AO353_22315 0.36 -0.1
4,887,830 - AO353_22315 0.36 +0.2
4,887,830 - AO353_22315 0.36 +2.3
4,887,830 - AO353_22315 0.36 +0.8
4,887,830 - AO353_22315 0.36 +3.9
4,887,858 - AO353_22315 0.38 +0.9
4,887,858 - AO353_22315 0.38 -0.9
4,887,930 - AO353_22315 0.44 -0.6
4,888,104 - AO353_22315 0.58 +2.3
4,888,241 + AO353_22315 0.70 -0.9
4,888,242 - AO353_22315 0.70 -0.0
4,888,378 + AO353_22315 0.81 +0.5
4,888,378 + AO353_22315 0.81 +0.8
4,888,379 - +3.9
4,888,379 - AO353_22315 0.81 -1.4
4,888,379 - AO353_22315 0.81 +1.1
4,888,446 + AO353_22315 0.87 +1.6
4,888,447 - AO353_22315 0.87 -1.9
4,888,459 + AO353_22315 0.88 +0.9
4,888,460 - AO353_22315 0.88 -2.5
4,888,484 + AO353_22315 0.90 +1.3
4,888,485 - +1.4
4,888,501 - -0.1
4,888,510 - -0.5
4,888,556 + +0.7
4,888,556 + -0.1
4,888,557 - +0.8
4,888,557 - +0.1
4,888,557 - +1.0
4,888,557 - +0.5
4,888,594 + +0.2
4,888,595 - -0.2
4,888,598 + -1.2
4,888,599 - +0.8
4,888,599 - -1.1
4,888,599 - -1.0
4,888,599 - +1.6
4,888,660 + -0.8
4,888,667 + -1.5
4,888,667 + +2.0
4,888,667 + +0.1
4,888,667 + +2.0
4,888,667 + -1.3
4,888,667 + +1.3
4,888,668 - -0.0
4,888,668 - +0.6
4,888,668 - -1.7
4,888,668 - -0.4
4,888,668 - -0.0
4,888,705 + -2.1
4,888,706 - -1.8
4,888,720 + +0.6
4,888,720 + +5.8
4,888,720 + -1.0
4,888,720 + -1.0
4,888,720 + -2.2
4,888,720 + -0.0
4,888,721 - -0.8
4,888,721 - +1.9
4,888,721 - +0.4
4,888,721 - +0.1
4,888,721 - +0.1
4,888,816 + -0.9
4,888,816 + -0.4
4,888,816 + +1.0
4,888,816 + -1.8
4,888,838 + +0.2
4,888,838 + +0.4
4,888,958 + +1.6
4,888,958 + +1.7
4,888,958 + -0.9
4,888,958 + -0.2
4,888,958 + -0.6
4,888,958 + +0.7
4,888,958 + -0.4
4,888,958 + +1.3
4,888,958 + -2.4
4,888,959 - AO353_22320 0.10 +1.1
4,888,959 - AO353_22320 0.10 -0.9
4,888,960 + AO353_22320 0.11 +0.5
4,888,960 + AO353_22320 0.11 -0.2
4,888,960 + AO353_22320 0.11 -1.0
4,889,000 + AO353_22320 0.32 +0.7
4,889,000 + AO353_22320 0.32 +0.9
4,889,000 + AO353_22320 0.32 +2.1
4,889,000 + AO353_22320 0.32 +0.4
4,889,001 - AO353_22320 0.33 -1.3
4,889,001 - AO353_22320 0.33 +1.6
4,889,001 - AO353_22320 0.33 -1.0
4,889,037 + AO353_22320 0.52 -0.0
4,889,061 + AO353_22320 0.65 -0.0
4,889,062 - AO353_22320 0.66 -2.2
4,889,078 + AO353_22320 0.74 -0.6
4,889,078 + AO353_22320 0.74 +0.0
4,889,078 + AO353_22320 0.74 -0.3
4,889,079 - AO353_22320 0.75 -1.6
4,889,079 - AO353_22320 0.75 +1.2
4,889,079 - AO353_22320 0.75 +0.6
4,889,079 - AO353_22320 0.75 -1.2
4,889,081 + AO353_22320 0.76 +1.3
4,889,103 + AO353_22320 0.88 +1.3
4,889,104 - AO353_22320 0.88 +0.8
4,889,104 - AO353_22320 0.88 +0.7
4,889,257 + AO353_22325 0.14 +0.0
4,889,257 + AO353_22325 0.14 +1.0
4,889,257 + AO353_22325 0.14 +0.5
4,889,257 + AO353_22325 0.14 -0.0
4,889,257 + AO353_22325 0.14 -0.4
4,889,257 + AO353_22325 0.14 -0.3
4,889,258 - AO353_22325 0.15 +0.4
4,889,258 - AO353_22325 0.15 -1.2
4,889,258 - AO353_22325 0.15 +1.1
4,889,258 - AO353_22325 0.15 +0.8
4,889,258 - AO353_22325 0.15 -2.0
4,889,323 + AO353_22325 0.23 +0.4
4,889,324 - AO353_22325 0.23 -0.8
4,889,407 - AO353_22325 0.34 +0.6
4,889,431 + AO353_22325 0.38 +0.2
4,889,431 + AO353_22325 0.38 -1.2
4,889,431 + AO353_22325 0.38 -0.1
4,889,431 + AO353_22325 0.38 +2.8
4,889,431 + AO353_22325 0.38 -0.3
4,889,431 + AO353_22325 0.38 +0.3
4,889,432 - AO353_22325 0.38 +0.8
4,889,432 - AO353_22325 0.38 -1.0
4,889,436 + AO353_22325 0.38 +1.6

Or see this region's nucleotide sequence