Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22005 and AO353_22010 are separated by 41 nucleotides AO353_22010 and AO353_22015 are separated by 339 nucleotides AO353_22015 and AO353_22020 are separated by 28 nucleotides AO353_22020 and AO353_22025 are separated by 75 nucleotides
AO353_22005: AO353_22005 - transcription factor, at 4,820,538 to 4,821,221
_22005
AO353_22010: AO353_22010 - hypothetical protein, at 4,821,263 to 4,821,478
_22010
AO353_22015: AO353_22015 - short-chain dehydrogenase, at 4,821,818 to 4,823,008
_22015
AO353_22020: AO353_22020 - hypothetical protein, at 4,823,037 to 4,823,474
_22020
AO353_22025: AO353_22025 - iron-sulfur cluster repair di-iron protein, at 4,823,550 to 4,824,224
_22025
Position (kb) 4821
4822
4823
4824 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4820.875 kb on + strand, within AO353_22005 at 4820.875 kb on + strand, within AO353_22005 at 4820.875 kb on + strand, within AO353_22005 at 4820.875 kb on + strand, within AO353_22005 at 4820.875 kb on + strand, within AO353_22005 at 4820.875 kb on + strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.931 kb on + strand, within AO353_22005 at 4820.931 kb on + strand, within AO353_22005 at 4820.931 kb on + strand, within AO353_22005 at 4820.931 kb on + strand, within AO353_22005 at 4820.932 kb on - strand at 4820.932 kb on - strand, within AO353_22005 at 4820.932 kb on - strand, within AO353_22005 at 4820.932 kb on - strand, within AO353_22005 at 4820.932 kb on - strand, within AO353_22005 at 4820.932 kb on - strand, within AO353_22005 at 4820.932 kb on - strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4821.055 kb on - strand, within AO353_22005 at 4821.055 kb on - strand, within AO353_22005 at 4821.055 kb on - strand, within AO353_22005 at 4821.055 kb on - strand, within AO353_22005 at 4821.055 kb on - strand, within AO353_22005 at 4821.055 kb on - strand, within AO353_22005 at 4821.055 kb on - strand, within AO353_22005 at 4821.131 kb on + strand, within AO353_22005 at 4821.132 kb on - strand, within AO353_22005 at 4821.132 kb on - strand, within AO353_22005 at 4821.389 kb on + strand, within AO353_22010 at 4821.389 kb on + strand, within AO353_22010 at 4821.390 kb on - strand, within AO353_22010 at 4821.390 kb on - strand, within AO353_22010 at 4821.390 kb on - strand, within AO353_22010 at 4821.390 kb on - strand, within AO353_22010 at 4821.391 kb on + strand, within AO353_22010 at 4821.391 kb on + strand, within AO353_22010 at 4821.392 kb on - strand, within AO353_22010 at 4821.392 kb on - strand at 4821.392 kb on - strand, within AO353_22010 at 4821.442 kb on + strand, within AO353_22010 at 4821.443 kb on - strand, within AO353_22010 at 4821.466 kb on + strand at 4821.479 kb on + strand at 4821.479 kb on + strand at 4821.480 kb on - strand at 4821.480 kb on - strand at 4821.484 kb on + strand at 4821.485 kb on - strand at 4821.493 kb on - strand at 4821.493 kb on - strand at 4821.493 kb on - strand at 4821.503 kb on + strand at 4821.503 kb on + strand at 4821.503 kb on + strand at 4821.504 kb on - strand at 4821.504 kb on - strand at 4821.504 kb on - strand at 4821.578 kb on + strand at 4821.578 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.600 kb on + strand at 4821.600 kb on + strand at 4821.600 kb on + strand at 4821.600 kb on + strand at 4821.600 kb on + strand at 4821.601 kb on - strand at 4821.601 kb on - strand at 4821.601 kb on - strand at 4821.601 kb on - strand at 4821.601 kb on - strand at 4821.601 kb on - strand at 4821.739 kb on + strand at 4821.818 kb on - strand at 4821.818 kb on - strand at 4821.818 kb on - strand at 4821.818 kb on - strand at 4821.839 kb on - strand at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.247 kb on - strand, within AO353_22015 at 4822.247 kb on - strand, within AO353_22015 at 4822.247 kb on - strand, within AO353_22015 at 4822.247 kb on - strand, within AO353_22015 at 4822.247 kb on - strand, within AO353_22015 at 4822.247 kb on - strand, within AO353_22015 at 4822.250 kb on + strand, within AO353_22015 at 4822.304 kb on + strand, within AO353_22015 at 4822.508 kb on + strand, within AO353_22015 at 4822.508 kb on + strand, within AO353_22015 at 4822.508 kb on + strand, within AO353_22015 at 4822.508 kb on + strand, within AO353_22015 at 4822.509 kb on - strand, within AO353_22015 at 4822.509 kb on - strand, within AO353_22015 at 4822.509 kb on - strand, within AO353_22015 at 4822.652 kb on + strand, within AO353_22015 at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.041 kb on - strand at 4823.041 kb on - strand at 4823.047 kb on - strand at 4823.047 kb on - strand at 4823.047 kb on - strand at 4823.190 kb on - strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.219 kb on - strand, within AO353_22020 at 4823.219 kb on - strand, within AO353_22020 at 4823.219 kb on - strand, within AO353_22020 at 4823.219 kb on - strand, within AO353_22020 at 4823.219 kb on - strand, within AO353_22020 at 4823.219 kb on - strand, within AO353_22020 at 4823.219 kb on - strand, within AO353_22020 at 4823.220 kb on + strand, within AO353_22020 at 4823.221 kb on - strand, within AO353_22020 at 4823.221 kb on - strand, within AO353_22020 at 4823.221 kb on - strand, within AO353_22020 at 4823.291 kb on + strand, within AO353_22020 at 4823.291 kb on + strand, within AO353_22020 at 4823.291 kb on + strand, within AO353_22020 at 4823.340 kb on + strand, within AO353_22020 at 4823.340 kb on + strand, within AO353_22020 at 4823.340 kb on + strand, within AO353_22020 at 4823.340 kb on + strand, within AO353_22020 at 4823.341 kb on - strand, within AO353_22020 at 4823.341 kb on - strand, within AO353_22020 at 4823.341 kb on - strand, within AO353_22020 at 4823.341 kb on - strand, within AO353_22020 at 4823.341 kb on - strand, within AO353_22020 at 4823.460 kb on + strand at 4823.460 kb on + strand at 4823.461 kb on - strand at 4823.492 kb on + strand at 4823.493 kb on - strand at 4823.685 kb on + strand, within AO353_22025 at 4823.685 kb on + strand, within AO353_22025 at 4823.685 kb on + strand at 4823.686 kb on - strand, within AO353_22025
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 4,820,875 + AO353_22005 0.49 -2.2 4,820,875 + AO353_22005 0.49 +1.6 4,820,875 + AO353_22005 0.49 +0.4 4,820,875 + AO353_22005 0.49 +1.3 4,820,875 + AO353_22005 0.49 -0.4 4,820,875 + AO353_22005 0.49 +1.0 4,820,876 - AO353_22005 0.49 +1.8 4,820,876 - AO353_22005 0.49 -0.4 4,820,876 - AO353_22005 0.49 -0.4 4,820,876 - AO353_22005 0.49 +0.0 4,820,876 - AO353_22005 0.49 -0.7 4,820,876 - AO353_22005 0.49 -1.6 4,820,876 - AO353_22005 0.49 +0.6 4,820,876 - AO353_22005 0.49 +1.6 4,820,931 + AO353_22005 0.57 -1.6 4,820,931 + AO353_22005 0.57 -0.1 4,820,931 + AO353_22005 0.57 +0.1 4,820,931 + AO353_22005 0.57 +0.4 4,820,932 - -0.4 4,820,932 - AO353_22005 0.58 -0.1 4,820,932 - AO353_22005 0.58 -0.6 4,820,932 - AO353_22005 0.58 +0.8 4,820,932 - AO353_22005 0.58 +0.1 4,820,932 - AO353_22005 0.58 +0.4 4,820,932 - AO353_22005 0.58 +1.6 4,820,935 + AO353_22005 0.58 +1.2 4,820,935 + AO353_22005 0.58 +0.3 4,820,935 + AO353_22005 0.58 +0.4 4,820,935 + AO353_22005 0.58 +0.4 4,820,935 + AO353_22005 0.58 -1.3 4,820,935 + AO353_22005 0.58 +0.7 4,820,935 + AO353_22005 0.58 -1.6 4,820,935 + AO353_22005 0.58 +0.3 4,820,935 + AO353_22005 0.58 +0.5 4,820,935 + AO353_22005 0.58 +0.0 4,820,936 - AO353_22005 0.58 -2.6 4,820,936 - AO353_22005 0.58 -0.5 4,820,936 - AO353_22005 0.58 +1.0 4,820,936 - AO353_22005 0.58 -0.1 4,820,936 - AO353_22005 0.58 +1.0 4,820,936 - AO353_22005 0.58 +1.3 4,820,936 - AO353_22005 0.58 -0.1 4,820,936 - AO353_22005 0.58 -1.0 4,820,936 - AO353_22005 0.58 +0.9 4,821,055 - AO353_22005 0.76 -1.2 4,821,055 - AO353_22005 0.76 -2.5 4,821,055 - AO353_22005 0.76 -0.6 4,821,055 - AO353_22005 0.76 -0.1 4,821,055 - AO353_22005 0.76 +0.6 4,821,055 - AO353_22005 0.76 +0.0 4,821,055 - AO353_22005 0.76 -0.5 4,821,131 + AO353_22005 0.87 -0.6 4,821,132 - AO353_22005 0.87 -0.4 4,821,132 - AO353_22005 0.87 -3.5 4,821,389 + AO353_22010 0.58 +0.0 4,821,389 + AO353_22010 0.58 +0.2 4,821,390 - AO353_22010 0.59 -1.2 4,821,390 - AO353_22010 0.59 -2.6 4,821,390 - AO353_22010 0.59 +0.6 4,821,390 - AO353_22010 0.59 +0.3 4,821,391 + AO353_22010 0.59 -0.1 4,821,391 + AO353_22010 0.59 -0.6 4,821,392 - AO353_22010 0.60 +0.2 4,821,392 - +2.6 4,821,392 - AO353_22010 0.60 -1.0 4,821,442 + AO353_22010 0.83 +0.8 4,821,443 - AO353_22010 0.83 -1.2 4,821,466 + -0.7 4,821,479 + +0.2 4,821,479 + +0.6 4,821,480 - +0.4 4,821,480 - -0.2 4,821,484 + +1.6 4,821,485 - +2.2 4,821,493 - -0.2 4,821,493 - -1.2 4,821,493 - +0.1 4,821,503 + +1.3 4,821,503 + +0.0 4,821,503 + -0.7 4,821,504 - -0.3 4,821,504 - -1.7 4,821,504 - +1.0 4,821,578 + -0.5 4,821,578 + +0.0 4,821,598 + -1.9 4,821,598 + -0.1 4,821,598 + +0.1 4,821,598 + -0.8 4,821,598 + -0.4 4,821,598 + -0.9 4,821,598 + +0.6 4,821,598 + -1.6 4,821,598 + +0.3 4,821,599 - +2.3 4,821,599 - +1.3 4,821,599 - +0.0 4,821,599 - -0.1 4,821,599 - -1.7 4,821,599 - +0.4 4,821,599 - +1.0 4,821,599 - -1.0 4,821,599 - +0.4 4,821,599 - +0.2 4,821,600 + +0.6 4,821,600 + +0.6 4,821,600 + -2.1 4,821,600 + +0.0 4,821,600 + -1.7 4,821,601 - +0.3 4,821,601 - -0.2 4,821,601 - +0.1 4,821,601 - +1.3 4,821,601 - -0.9 4,821,601 - -0.1 4,821,739 + +0.0 4,821,818 - +0.8 4,821,818 - -0.7 4,821,818 - +0.3 4,821,818 - +0.6 4,821,839 - -0.4 4,822,246 + AO353_22015 0.36 +0.0 4,822,246 + AO353_22015 0.36 -1.1 4,822,246 + AO353_22015 0.36 +0.0 4,822,246 + AO353_22015 0.36 -0.7 4,822,246 + AO353_22015 0.36 +0.7 4,822,246 + AO353_22015 0.36 -2.2 4,822,246 + AO353_22015 0.36 -1.4 4,822,246 + AO353_22015 0.36 -1.4 4,822,246 + AO353_22015 0.36 -1.6 4,822,247 - AO353_22015 0.36 +0.6 4,822,247 - AO353_22015 0.36 +1.2 4,822,247 - AO353_22015 0.36 -1.4 4,822,247 - AO353_22015 0.36 +0.0 4,822,247 - AO353_22015 0.36 +0.9 4,822,247 - AO353_22015 0.36 -0.5 4,822,250 + AO353_22015 0.36 -0.9 4,822,304 + AO353_22015 0.41 -0.2 4,822,508 + AO353_22015 0.58 -0.2 4,822,508 + AO353_22015 0.58 -1.2 4,822,508 + AO353_22015 0.58 -1.0 4,822,508 + AO353_22015 0.58 +0.0 4,822,509 - AO353_22015 0.58 +0.0 4,822,509 - AO353_22015 0.58 -2.1 4,822,509 - AO353_22015 0.58 -0.4 4,822,652 + AO353_22015 0.70 -1.2 4,823,040 + +1.6 4,823,040 + -1.5 4,823,040 + +1.0 4,823,040 + +0.4 4,823,040 + -3.1 4,823,040 + -1.6 4,823,040 + +0.6 4,823,040 + +0.5 4,823,040 + +0.3 4,823,040 + +0.2 4,823,040 + +0.0 4,823,041 - -0.8 4,823,041 - +0.5 4,823,047 - -1.6 4,823,047 - -0.6 4,823,047 - +0.0 4,823,190 - AO353_22020 0.35 -1.0 4,823,218 + AO353_22020 0.41 -1.6 4,823,218 + AO353_22020 0.41 -1.6 4,823,218 + AO353_22020 0.41 +0.3 4,823,218 + AO353_22020 0.41 +0.8 4,823,218 + AO353_22020 0.41 +0.3 4,823,218 + AO353_22020 0.41 +1.3 4,823,218 + AO353_22020 0.41 +0.2 4,823,218 + AO353_22020 0.41 +0.4 4,823,219 - AO353_22020 0.42 -0.1 4,823,219 - AO353_22020 0.42 +0.5 4,823,219 - AO353_22020 0.42 -0.3 4,823,219 - AO353_22020 0.42 -0.5 4,823,219 - AO353_22020 0.42 +1.3 4,823,219 - AO353_22020 0.42 -0.2 4,823,219 - AO353_22020 0.42 -0.3 4,823,220 + AO353_22020 0.42 -2.1 4,823,221 - AO353_22020 0.42 -0.8 4,823,221 - AO353_22020 0.42 -1.1 4,823,221 - AO353_22020 0.42 -0.5 4,823,291 + AO353_22020 0.58 -1.2 4,823,291 + AO353_22020 0.58 +1.2 4,823,291 + AO353_22020 0.58 -0.5 4,823,340 + AO353_22020 0.69 -1.1 4,823,340 + AO353_22020 0.69 +0.5 4,823,340 + AO353_22020 0.69 +0.7 4,823,340 + AO353_22020 0.69 +1.1 4,823,341 - AO353_22020 0.69 +0.4 4,823,341 - AO353_22020 0.69 -1.2 4,823,341 - AO353_22020 0.69 +0.1 4,823,341 - AO353_22020 0.69 +0.0 4,823,341 - AO353_22020 0.69 -1.4 4,823,460 + -1.2 4,823,460 + -0.5 4,823,461 - -0.4 4,823,492 + -0.0 4,823,493 - +0.0 4,823,685 + AO353_22025 0.20 +1.6 4,823,685 + AO353_22025 0.20 +1.6 4,823,685 + -0.7 4,823,686 - AO353_22025 0.20 +0.3
Or see this region's nucleotide sequence