Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21580 and AO353_21585 are separated by 15 nucleotides AO353_21585 and AO353_21590 are separated by 217 nucleotides
AO353_21580: AO353_21580 - type VI secretion protein, at 4,725,771 to 4,726,871
_21580
AO353_21585: AO353_21585 - hydroxyacid dehydrogenase, at 4,726,887 to 4,727,837
_21585
AO353_21590: AO353_21590 - isochorismatase, at 4,728,055 to 4,728,579
_21590
Position (kb)
4726
4727
4728 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4726.479 kb on + strand, within AO353_21580 at 4726.479 kb on + strand, within AO353_21580 at 4726.479 kb on + strand, within AO353_21580 at 4726.479 kb on + strand, within AO353_21580 at 4726.480 kb on - strand, within AO353_21580 at 4726.503 kb on + strand, within AO353_21580 at 4726.504 kb on - strand, within AO353_21580 at 4726.755 kb on + strand, within AO353_21580 at 4726.755 kb on + strand, within AO353_21580 at 4726.755 kb on + strand, within AO353_21580 at 4726.755 kb on + strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.787 kb on + strand at 4726.869 kb on + strand at 4726.870 kb on - strand at 4727.035 kb on - strand, within AO353_21585 at 4727.035 kb on - strand, within AO353_21585 at 4727.035 kb on - strand, within AO353_21585 at 4727.035 kb on - strand, within AO353_21585 at 4727.073 kb on + strand, within AO353_21585 at 4727.165 kb on + strand, within AO353_21585 at 4727.330 kb on - strand, within AO353_21585 at 4727.565 kb on + strand, within AO353_21585 at 4727.566 kb on - strand, within AO353_21585 at 4727.665 kb on + strand, within AO353_21585 at 4727.665 kb on + strand, within AO353_21585 at 4727.665 kb on + strand, within AO353_21585 at 4727.665 kb on + strand, within AO353_21585 at 4727.666 kb on - strand, within AO353_21585 at 4727.666 kb on - strand, within AO353_21585 at 4727.794 kb on + strand at 4727.794 kb on + strand at 4727.794 kb on + strand at 4727.795 kb on - strand at 4727.795 kb on - strand at 4727.823 kb on + strand at 4727.850 kb on + strand at 4727.850 kb on + strand at 4727.850 kb on + strand at 4727.863 kb on - strand at 4727.883 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.927 kb on - strand at 4727.927 kb on - strand at 4727.983 kb on + strand at 4728.020 kb on + strand at 4728.020 kb on + strand at 4728.020 kb on + strand at 4728.020 kb on + strand at 4728.020 kb on + strand at 4728.020 kb on + strand at 4728.021 kb on - strand at 4728.021 kb on - strand at 4728.032 kb on + strand at 4728.033 kb on - strand at 4728.193 kb on + strand, within AO353_21590 at 4728.193 kb on + strand, within AO353_21590 at 4728.194 kb on - strand, within AO353_21590 at 4728.222 kb on + strand, within AO353_21590 at 4728.223 kb on - strand, within AO353_21590 at 4728.237 kb on - strand, within AO353_21590 at 4728.237 kb on - strand, within AO353_21590 at 4728.379 kb on + strand, within AO353_21590 at 4728.379 kb on + strand, within AO353_21590 at 4728.379 kb on + strand, within AO353_21590 at 4728.380 kb on - strand, within AO353_21590 at 4728.380 kb on - strand, within AO353_21590 at 4728.380 kb on - strand, within AO353_21590 at 4728.380 kb on - strand, within AO353_21590 at 4728.380 kb on - strand, within AO353_21590 at 4728.380 kb on - strand, within AO353_21590 at 4728.443 kb on + strand, within AO353_21590 at 4728.443 kb on + strand, within AO353_21590 at 4728.444 kb on - strand, within AO353_21590 at 4728.444 kb on - strand, within AO353_21590 at 4728.444 kb on - strand, within AO353_21590 at 4728.499 kb on + strand, within AO353_21590 at 4728.499 kb on + strand, within AO353_21590 at 4728.500 kb on - strand, within AO353_21590 at 4728.500 kb on - strand, within AO353_21590 at 4728.533 kb on + strand at 4728.534 kb on - strand at 4728.579 kb on + strand at 4728.579 kb on + strand at 4728.579 kb on + strand at 4728.579 kb on + strand at 4728.579 kb on + strand at 4728.579 kb on + strand at 4728.579 kb on + strand at 4728.579 kb on + strand at 4728.580 kb on - strand at 4728.580 kb on - strand at 4728.580 kb on - strand at 4728.580 kb on - strand at 4728.580 kb on - strand at 4728.580 kb on - strand at 4728.580 kb on - strand at 4728.666 kb on + strand at 4728.666 kb on + strand at 4728.666 kb on + strand at 4728.666 kb on + strand at 4728.666 kb on + strand at 4728.667 kb on - strand at 4728.667 kb on - strand at 4728.670 kb on + strand at 4728.671 kb on - strand at 4728.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 4,726,479 + AO353_21580 0.64 +0.6 4,726,479 + AO353_21580 0.64 -1.7 4,726,479 + AO353_21580 0.64 -0.4 4,726,479 + AO353_21580 0.64 -0.4 4,726,480 - AO353_21580 0.64 -0.5 4,726,503 + AO353_21580 0.66 -0.2 4,726,504 - AO353_21580 0.67 +0.2 4,726,755 + AO353_21580 0.89 -1.5 4,726,755 + AO353_21580 0.89 +0.5 4,726,755 + AO353_21580 0.89 -1.8 4,726,755 + AO353_21580 0.89 -1.2 4,726,756 - AO353_21580 0.89 -1.7 4,726,756 - AO353_21580 0.89 -0.2 4,726,756 - AO353_21580 0.89 -1.2 4,726,756 - AO353_21580 0.89 -0.7 4,726,756 - AO353_21580 0.89 -2.8 4,726,756 - AO353_21580 0.89 +0.8 4,726,787 + -0.3 4,726,869 + -0.8 4,726,870 - -0.8 4,727,035 - AO353_21585 0.16 +0.0 4,727,035 - AO353_21585 0.16 -0.7 4,727,035 - AO353_21585 0.16 +0.2 4,727,035 - AO353_21585 0.16 -1.5 4,727,073 + AO353_21585 0.20 +0.6 4,727,165 + AO353_21585 0.29 +0.4 4,727,330 - AO353_21585 0.47 -2.3 4,727,565 + AO353_21585 0.71 +0.7 4,727,566 - AO353_21585 0.71 +0.0 4,727,665 + AO353_21585 0.82 -0.4 4,727,665 + AO353_21585 0.82 +1.1 4,727,665 + AO353_21585 0.82 +0.9 4,727,665 + AO353_21585 0.82 +0.2 4,727,666 - AO353_21585 0.82 -1.4 4,727,666 - AO353_21585 0.82 +1.0 4,727,794 + +0.6 4,727,794 + -1.4 4,727,794 + -1.5 4,727,795 - +0.4 4,727,795 - +1.1 4,727,823 + +0.9 4,727,850 + +1.2 4,727,850 + -1.1 4,727,850 + -0.5 4,727,863 - -0.0 4,727,883 + -0.5 4,727,926 + +0.3 4,727,926 + +1.0 4,727,926 + -0.5 4,727,926 + +1.1 4,727,926 + +0.0 4,727,926 + -0.5 4,727,926 + +0.2 4,727,926 + +1.9 4,727,926 + +0.9 4,727,927 - +0.6 4,727,927 - -2.1 4,727,983 + -2.0 4,728,020 + -0.4 4,728,020 + -1.4 4,728,020 + +0.4 4,728,020 + +3.2 4,728,020 + +0.7 4,728,020 + -1.1 4,728,021 - -2.4 4,728,021 - +1.0 4,728,032 + +2.3 4,728,033 - -0.9 4,728,193 + AO353_21590 0.26 +0.9 4,728,193 + AO353_21590 0.26 +1.6 4,728,194 - AO353_21590 0.26 +0.4 4,728,222 + AO353_21590 0.32 -1.3 4,728,223 - AO353_21590 0.32 +0.5 4,728,237 - AO353_21590 0.35 -1.1 4,728,237 - AO353_21590 0.35 +0.5 4,728,379 + AO353_21590 0.62 +1.1 4,728,379 + AO353_21590 0.62 -0.8 4,728,379 + AO353_21590 0.62 +0.0 4,728,380 - AO353_21590 0.62 +0.6 4,728,380 - AO353_21590 0.62 -1.4 4,728,380 - AO353_21590 0.62 +1.0 4,728,380 - AO353_21590 0.62 -1.0 4,728,380 - AO353_21590 0.62 +1.6 4,728,380 - AO353_21590 0.62 -0.1 4,728,443 + AO353_21590 0.74 -1.4 4,728,443 + AO353_21590 0.74 +1.0 4,728,444 - AO353_21590 0.74 +0.3 4,728,444 - AO353_21590 0.74 +3.2 4,728,444 - AO353_21590 0.74 -0.5 4,728,499 + AO353_21590 0.85 +1.6 4,728,499 + AO353_21590 0.85 -0.3 4,728,500 - AO353_21590 0.85 -1.2 4,728,500 - AO353_21590 0.85 -2.0 4,728,533 + -0.7 4,728,534 - -1.0 4,728,579 + +1.8 4,728,579 + +1.1 4,728,579 + -0.7 4,728,579 + -1.2 4,728,579 + -2.1 4,728,579 + +0.2 4,728,579 + -0.7 4,728,579 + -1.0 4,728,580 - +0.2 4,728,580 - -1.6 4,728,580 - -2.4 4,728,580 - -0.4 4,728,580 - -1.2 4,728,580 - +0.3 4,728,580 - -1.5 4,728,666 + +1.5 4,728,666 + -0.9 4,728,666 + +0.2 4,728,666 + -0.7 4,728,666 + +1.0 4,728,667 - +0.8 4,728,667 - +0.6 4,728,670 + -0.5 4,728,671 - +0.6 4,728,671 - -0.1
Or see this region's nucleotide sequence