Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21440

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21435 and AO353_21440 are separated by 139 nucleotidesAO353_21440 and AO353_21445 are separated by 39 nucleotidesAO353_21445 and AO353_21450 overlap by 4 nucleotidesAO353_21450 and AO353_21455 overlap by 4 nucleotides AO353_21435: AO353_21435 - ABC transporter substrate-binding protein, at 4,691,068 to 4,692,081 _21435 AO353_21440: AO353_21440 - hypothetical protein, at 4,692,221 to 4,692,658 _21440 AO353_21445: AO353_21445 - cation:proton antiporter, at 4,692,698 to 4,693,066 _21445 AO353_21450: AO353_21450 - cation:proton antiporter, at 4,693,063 to 4,693,341 _21450 AO353_21455: AO353_21455 - cation:proton antiporter, at 4,693,338 to 4,693,826 _21455 Position (kb) 4692 4693Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4691.251 kb on - strand, within AO353_21435at 4691.251 kb on - strand, within AO353_21435at 4691.428 kb on + strand, within AO353_21435at 4691.428 kb on + strand, within AO353_21435at 4691.429 kb on - strand, within AO353_21435at 4691.506 kb on + strand, within AO353_21435at 4691.507 kb on - strand, within AO353_21435at 4691.507 kb on - strand, within AO353_21435at 4691.559 kb on + strand, within AO353_21435at 4691.611 kb on + strand, within AO353_21435at 4691.611 kb on + strand, within AO353_21435at 4691.629 kb on + strand, within AO353_21435at 4691.629 kb on + strand, within AO353_21435at 4691.629 kb on + strand, within AO353_21435at 4691.629 kb on + strandat 4691.629 kb on + strand, within AO353_21435at 4691.629 kb on + strand, within AO353_21435at 4691.629 kb on + strandat 4691.629 kb on + strand, within AO353_21435at 4691.629 kb on + strand, within AO353_21435at 4691.629 kb on + strand, within AO353_21435at 4691.629 kb on + strand, within AO353_21435at 4691.629 kb on + strand, within AO353_21435at 4691.630 kb on - strand, within AO353_21435at 4691.630 kb on - strand, within AO353_21435at 4691.630 kb on - strand, within AO353_21435at 4691.630 kb on - strand, within AO353_21435at 4691.630 kb on - strand, within AO353_21435at 4691.630 kb on - strand, within AO353_21435at 4691.630 kb on - strand, within AO353_21435at 4691.630 kb on - strand, within AO353_21435at 4691.630 kb on - strand, within AO353_21435at 4691.630 kb on - strand, within AO353_21435at 4691.630 kb on - strandat 4691.630 kb on - strand, within AO353_21435at 4691.630 kb on - strand, within AO353_21435at 4691.630 kb on - strand, within AO353_21435at 4691.713 kb on + strand, within AO353_21435at 4691.713 kb on + strand, within AO353_21435at 4691.714 kb on - strand, within AO353_21435at 4691.714 kb on - strand, within AO353_21435at 4691.714 kb on - strand, within AO353_21435at 4691.714 kb on - strand, within AO353_21435at 4691.716 kb on + strandat 4691.716 kb on + strand, within AO353_21435at 4691.916 kb on + strand, within AO353_21435at 4691.917 kb on - strand, within AO353_21435at 4692.079 kb on + strandat 4692.079 kb on + strandat 4692.080 kb on - strandat 4692.284 kb on + strand, within AO353_21440at 4692.284 kb on + strand, within AO353_21440at 4692.285 kb on - strand, within AO353_21440at 4692.333 kb on + strand, within AO353_21440at 4692.333 kb on + strand, within AO353_21440at 4692.333 kb on + strand, within AO353_21440at 4692.333 kb on + strand, within AO353_21440at 4692.334 kb on - strand, within AO353_21440at 4692.334 kb on - strand, within AO353_21440at 4692.334 kb on - strand, within AO353_21440at 4692.603 kb on - strand, within AO353_21440at 4692.663 kb on + strandat 4692.664 kb on - strandat 4692.664 kb on - strandat 4692.951 kb on + strand, within AO353_21445at 4692.951 kb on + strand, within AO353_21445at 4692.951 kb on + strand, within AO353_21445at 4692.951 kb on + strand, within AO353_21445at 4692.951 kb on + strand, within AO353_21445at 4692.952 kb on - strand, within AO353_21445at 4693.154 kb on + strand, within AO353_21450at 4693.154 kb on + strand, within AO353_21450at 4693.154 kb on + strand, within AO353_21450at 4693.154 kb on + strand, within AO353_21450at 4693.154 kb on + strand, within AO353_21450at 4693.154 kb on + strand, within AO353_21450at 4693.154 kb on + strand, within AO353_21450at 4693.155 kb on - strand, within AO353_21450at 4693.155 kb on - strand, within AO353_21450at 4693.155 kb on - strand, within AO353_21450at 4693.155 kb on - strand, within AO353_21450at 4693.170 kb on - strand, within AO353_21450at 4693.209 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.211 kb on + strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.212 kb on - strand, within AO353_21450at 4693.217 kb on + strand, within AO353_21450at 4693.217 kb on + strand, within AO353_21450at 4693.218 kb on - strand, within AO353_21450at 4693.218 kb on - strand, within AO353_21450at 4693.218 kb on - strand, within AO353_21450at 4693.218 kb on - strand, within AO353_21450at 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.369 kb on + strandat 4693.370 kb on - strandat 4693.370 kb on - strandat 4693.370 kb on - strandat 4693.370 kb on - strandat 4693.370 kb on - strandat 4693.370 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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4,691,251 - AO353_21435 0.18 +0.5
4,691,251 - AO353_21435 0.18 -0.4
4,691,428 + AO353_21435 0.36 -0.5
4,691,428 + AO353_21435 0.36 -0.1
4,691,429 - AO353_21435 0.36 +0.2
4,691,506 + AO353_21435 0.43 -1.6
4,691,507 - AO353_21435 0.43 -0.4
4,691,507 - AO353_21435 0.43 -1.0
4,691,559 + AO353_21435 0.48 -1.2
4,691,611 + AO353_21435 0.54 -0.8
4,691,611 + AO353_21435 0.54 -2.0
4,691,629 + AO353_21435 0.55 -0.4
4,691,629 + AO353_21435 0.55 -0.3
4,691,629 + AO353_21435 0.55 +0.4
4,691,629 + +0.9
4,691,629 + AO353_21435 0.55 -0.2
4,691,629 + AO353_21435 0.55 -1.1
4,691,629 + +1.6
4,691,629 + AO353_21435 0.55 -1.2
4,691,629 + AO353_21435 0.55 -0.6
4,691,629 + AO353_21435 0.55 +0.0
4,691,629 + AO353_21435 0.55 -0.5
4,691,629 + AO353_21435 0.55 +0.0
4,691,630 - AO353_21435 0.55 -1.2
4,691,630 - AO353_21435 0.55 -0.3
4,691,630 - AO353_21435 0.55 +0.3
4,691,630 - AO353_21435 0.55 -1.2
4,691,630 - AO353_21435 0.55 -0.6
4,691,630 - AO353_21435 0.55 +1.0
4,691,630 - AO353_21435 0.55 +0.5
4,691,630 - AO353_21435 0.55 -0.3
4,691,630 - AO353_21435 0.55 +0.0
4,691,630 - AO353_21435 0.55 +1.9
4,691,630 - -0.4
4,691,630 - AO353_21435 0.55 -1.1
4,691,630 - AO353_21435 0.55 +0.4
4,691,630 - AO353_21435 0.55 -0.2
4,691,713 + AO353_21435 0.64 -0.7
4,691,713 + AO353_21435 0.64 -0.8
4,691,714 - AO353_21435 0.64 +0.3
4,691,714 - AO353_21435 0.64 +0.0
4,691,714 - AO353_21435 0.64 +2.0
4,691,714 - AO353_21435 0.64 -0.5
4,691,716 + +0.6
4,691,716 + AO353_21435 0.64 +0.6
4,691,916 + AO353_21435 0.84 -0.7
4,691,917 - AO353_21435 0.84 +1.2
4,692,079 + -2.2
4,692,079 + -1.9
4,692,080 - -1.0
4,692,284 + AO353_21440 0.14 +1.6
4,692,284 + AO353_21440 0.14 -1.7
4,692,285 - AO353_21440 0.15 +1.3
4,692,333 + AO353_21440 0.26 -2.3
4,692,333 + AO353_21440 0.26 -1.1
4,692,333 + AO353_21440 0.26 -0.2
4,692,333 + AO353_21440 0.26 -0.6
4,692,334 - AO353_21440 0.26 +0.0
4,692,334 - AO353_21440 0.26 -0.3
4,692,334 - AO353_21440 0.26 -1.6
4,692,603 - AO353_21440 0.87 -1.6
4,692,663 + -0.8
4,692,664 - -1.0
4,692,664 - -1.0
4,692,951 + AO353_21445 0.69 +0.4
4,692,951 + AO353_21445 0.69 -2.4
4,692,951 + AO353_21445 0.69 -0.2
4,692,951 + AO353_21445 0.69 +0.2
4,692,951 + AO353_21445 0.69 -0.1
4,692,952 - AO353_21445 0.69 -0.5
4,693,154 + AO353_21450 0.33 +0.8
4,693,154 + AO353_21450 0.33 -3.0
4,693,154 + AO353_21450 0.33 +0.9
4,693,154 + AO353_21450 0.33 -0.7
4,693,154 + AO353_21450 0.33 -1.4
4,693,154 + AO353_21450 0.33 +0.1
4,693,154 + AO353_21450 0.33 -0.4
4,693,155 - AO353_21450 0.33 -0.7
4,693,155 - AO353_21450 0.33 -0.7
4,693,155 - AO353_21450 0.33 -2.3
4,693,155 - AO353_21450 0.33 +0.1
4,693,170 - AO353_21450 0.38 +0.1
4,693,209 + AO353_21450 0.52 -0.7
4,693,211 + AO353_21450 0.53 +0.4
4,693,211 + AO353_21450 0.53 +0.4
4,693,211 + AO353_21450 0.53 -0.4
4,693,211 + AO353_21450 0.53 -1.7
4,693,211 + AO353_21450 0.53 +0.0
4,693,211 + AO353_21450 0.53 +0.9
4,693,211 + AO353_21450 0.53 +1.2
4,693,211 + AO353_21450 0.53 +0.1
4,693,211 + AO353_21450 0.53 -1.9
4,693,211 + AO353_21450 0.53 -0.3
4,693,211 + AO353_21450 0.53 +0.2
4,693,212 - AO353_21450 0.53 -0.7
4,693,212 - AO353_21450 0.53 -0.3
4,693,212 - AO353_21450 0.53 +0.7
4,693,212 - AO353_21450 0.53 +0.3
4,693,212 - AO353_21450 0.53 +0.3
4,693,212 - AO353_21450 0.53 -0.3
4,693,212 - AO353_21450 0.53 -2.0
4,693,212 - AO353_21450 0.53 -1.3
4,693,217 + AO353_21450 0.55 +0.5
4,693,217 + AO353_21450 0.55 +0.9
4,693,218 - AO353_21450 0.56 +0.0
4,693,218 - AO353_21450 0.56 -3.1
4,693,218 - AO353_21450 0.56 +1.6
4,693,218 - AO353_21450 0.56 -0.9
4,693,369 + +0.6
4,693,369 + -0.6
4,693,369 + +0.2
4,693,369 + -1.9
4,693,369 + +2.2
4,693,369 + +0.1
4,693,369 + +0.7
4,693,369 + +0.2
4,693,369 + -1.0
4,693,370 - +0.0
4,693,370 - +0.9
4,693,370 - -1.9
4,693,370 - -0.9
4,693,370 - +1.6
4,693,370 - -1.4

Or see this region's nucleotide sequence