Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20700

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20695 and AO353_20700 overlap by 4 nucleotidesAO353_20700 and AO353_20705 are separated by 160 nucleotidesAO353_20705 and AO353_20710 are separated by 57 nucleotidesAO353_20710 and AO353_20715 are separated by 96 nucleotidesAO353_20715 and AO353_20720 are separated by 239 nucleotides AO353_20695: AO353_20695 - O-succinylhomoserine sulfhydrylase, at 4,540,755 to 4,541,966 _20695 AO353_20700: AO353_20700 - oxidoreductase, at 4,541,963 to 4,542,739 _20700 AO353_20705: AO353_20705 - tRNA-Val, at 4,542,900 to 4,542,975 _20705 AO353_20710: AO353_20710 - tRNA-Asp, at 4,543,033 to 4,543,109 _20710 AO353_20715: AO353_20715 - tRNA-Asp, at 4,543,206 to 4,543,282 _20715 AO353_20720: AO353_20720 - gamma-glutamylputrescine oxidoreductase, at 4,543,522 to 4,544,805 _20720 Position (kb) 4541 4542 4543Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4541.148 kb on + strand, within AO353_20695at 4541.149 kb on - strand, within AO353_20695at 4541.149 kb on - strand, within AO353_20695at 4541.149 kb on - strand, within AO353_20695at 4541.178 kb on + strand, within AO353_20695at 4541.178 kb on + strand, within AO353_20695at 4541.178 kb on + strand, within AO353_20695at 4541.178 kb on + strand, within AO353_20695at 4541.178 kb on + strand, within AO353_20695at 4541.179 kb on - strand, within AO353_20695at 4541.179 kb on - strand, within AO353_20695at 4541.179 kb on - strand, within AO353_20695at 4541.179 kb on - strand, within AO353_20695at 4541.179 kb on - strand, within AO353_20695at 4541.179 kb on - strand, within AO353_20695at 4541.179 kb on - strand, within AO353_20695at 4541.816 kb on + strand, within AO353_20695at 4542.271 kb on + strand, within AO353_20700at 4542.271 kb on + strand, within AO353_20700at 4542.271 kb on + strand, within AO353_20700at 4542.272 kb on - strand, within AO353_20700at 4542.272 kb on - strand, within AO353_20700at 4542.362 kb on + strand, within AO353_20700at 4542.362 kb on + strand, within AO353_20700at 4542.362 kb on + strand, within AO353_20700at 4542.363 kb on - strand, within AO353_20700at 4542.430 kb on + strand, within AO353_20700at 4542.440 kb on + strand, within AO353_20700at 4542.542 kb on - strand, within AO353_20700at 4542.542 kb on - strand, within AO353_20700at 4542.654 kb on + strand, within AO353_20700at 4542.655 kb on - strand, within AO353_20700at 4542.728 kb on + strandat 4542.728 kb on + strandat 4542.729 kb on - strandat 4542.729 kb on - strandat 4542.729 kb on - strandat 4542.729 kb on - strandat 4542.856 kb on + strandat 4542.856 kb on + strandat 4542.857 kb on - strandat 4543.153 kb on + strandat 4543.153 kb on + strandat 4543.153 kb on + strandat 4543.153 kb on + strandat 4543.153 kb on + strandat 4543.156 kb on + strandat 4543.156 kb on + strandat 4543.156 kb on + strandat 4543.156 kb on + strandat 4543.156 kb on + strandat 4543.156 kb on + strandat 4543.156 kb on + strandat 4543.156 kb on + strandat 4543.283 kb on + strandat 4543.283 kb on + strandat 4543.283 kb on + strandat 4543.283 kb on + strandat 4543.335 kb on + strandat 4543.425 kb on + strandat 4543.501 kb on + strandat 4543.502 kb on - strandat 4543.502 kb on - strandat 4543.502 kb on - strandat 4543.502 kb on - strandat 4543.502 kb on - strandat 4543.553 kb on + strandat 4543.553 kb on + strandat 4543.554 kb on - strandat 4543.554 kb on - strandat 4543.554 kb on - strandat 4543.694 kb on + strand, within AO353_20720at 4543.694 kb on + strand, within AO353_20720at 4543.694 kb on + strand, within AO353_20720at 4543.694 kb on + strand, within AO353_20720at 4543.694 kb on + strand, within AO353_20720at 4543.695 kb on - strand, within AO353_20720at 4543.728 kb on - strand, within AO353_20720at 4543.728 kb on - strand, within AO353_20720at 4543.728 kb on - strand, within AO353_20720at 4543.728 kb on - strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strandat 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strandat 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.730 kb on + strand, within AO353_20720at 4543.731 kb on - strand, within AO353_20720at 4543.731 kb on - strand, within AO353_20720at 4543.731 kb on - strand, within AO353_20720at 4543.731 kb on - strand, within AO353_20720at 4543.731 kb on - strand, within AO353_20720at 4543.731 kb on - strand, within AO353_20720at 4543.731 kb on - strand, within AO353_20720at 4543.731 kb on - strand, within AO353_20720at 4543.731 kb on - strand, within AO353_20720

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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4,541,148 + AO353_20695 0.32 +0.2
4,541,149 - AO353_20695 0.33 -0.7
4,541,149 - AO353_20695 0.33 +0.1
4,541,149 - AO353_20695 0.33 -1.5
4,541,178 + AO353_20695 0.35 -0.2
4,541,178 + AO353_20695 0.35 -0.9
4,541,178 + AO353_20695 0.35 -0.4
4,541,178 + AO353_20695 0.35 -0.3
4,541,178 + AO353_20695 0.35 -1.5
4,541,179 - AO353_20695 0.35 -0.7
4,541,179 - AO353_20695 0.35 -1.9
4,541,179 - AO353_20695 0.35 -0.6
4,541,179 - AO353_20695 0.35 -2.0
4,541,179 - AO353_20695 0.35 -2.0
4,541,179 - AO353_20695 0.35 -0.4
4,541,179 - AO353_20695 0.35 +0.5
4,541,816 + AO353_20695 0.88 -1.8
4,542,271 + AO353_20700 0.40 -1.2
4,542,271 + AO353_20700 0.40 -1.4
4,542,271 + AO353_20700 0.40 -0.8
4,542,272 - AO353_20700 0.40 -1.2
4,542,272 - AO353_20700 0.40 -2.2
4,542,362 + AO353_20700 0.51 -1.7
4,542,362 + AO353_20700 0.51 -0.7
4,542,362 + AO353_20700 0.51 -1.7
4,542,363 - AO353_20700 0.51 -0.9
4,542,430 + AO353_20700 0.60 -0.2
4,542,440 + AO353_20700 0.61 +0.6
4,542,542 - AO353_20700 0.75 +0.1
4,542,542 - AO353_20700 0.75 -1.2
4,542,654 + AO353_20700 0.89 -3.4
4,542,655 - AO353_20700 0.89 -0.9
4,542,728 + +0.5
4,542,728 + +0.2
4,542,729 - -0.1
4,542,729 - +0.1
4,542,729 - -1.2
4,542,729 - -0.4
4,542,856 + +1.1
4,542,856 + +0.4
4,542,857 - -0.4
4,543,153 + +0.8
4,543,153 + +0.2
4,543,153 + +0.6
4,543,153 + -1.5
4,543,153 + +1.0
4,543,156 + +1.2
4,543,156 + +0.4
4,543,156 + +0.3
4,543,156 + -1.3
4,543,156 + +0.1
4,543,156 + -0.1
4,543,156 + +2.2
4,543,156 + -0.1
4,543,283 + -0.8
4,543,283 + -1.1
4,543,283 + -0.5
4,543,283 + +0.1
4,543,335 + -1.4
4,543,425 + -1.1
4,543,501 + +1.6
4,543,502 - +1.3
4,543,502 - +0.2
4,543,502 - +0.2
4,543,502 - -1.4
4,543,502 - +2.4
4,543,553 + -0.7
4,543,553 + +1.2
4,543,554 - +0.3
4,543,554 - -1.6
4,543,554 - -1.1
4,543,694 + AO353_20720 0.13 -1.5
4,543,694 + AO353_20720 0.13 -2.8
4,543,694 + AO353_20720 0.13 -0.8
4,543,694 + AO353_20720 0.13 +1.6
4,543,694 + AO353_20720 0.13 +1.2
4,543,695 - AO353_20720 0.13 -2.6
4,543,728 - AO353_20720 0.16 -0.9
4,543,728 - AO353_20720 0.16 +0.6
4,543,728 - AO353_20720 0.16 +0.8
4,543,728 - AO353_20720 0.16 +0.1
4,543,730 + AO353_20720 0.16 +2.2
4,543,730 + AO353_20720 0.16 -0.4
4,543,730 + AO353_20720 0.16 +0.8
4,543,730 + +1.2
4,543,730 + AO353_20720 0.16 -1.4
4,543,730 + AO353_20720 0.16 +1.3
4,543,730 + +1.1
4,543,730 + AO353_20720 0.16 +1.3
4,543,730 + AO353_20720 0.16 -0.3
4,543,730 + AO353_20720 0.16 +1.1
4,543,730 + AO353_20720 0.16 -1.5
4,543,730 + AO353_20720 0.16 +1.2
4,543,730 + AO353_20720 0.16 +0.9
4,543,730 + AO353_20720 0.16 -0.8
4,543,730 + AO353_20720 0.16 -1.5
4,543,730 + AO353_20720 0.16 +1.0
4,543,730 + AO353_20720 0.16 +0.3
4,543,730 + AO353_20720 0.16 +0.5
4,543,730 + AO353_20720 0.16 -0.6
4,543,730 + AO353_20720 0.16 -0.4
4,543,730 + AO353_20720 0.16 +0.5
4,543,730 + AO353_20720 0.16 +0.1
4,543,730 + AO353_20720 0.16 -1.7
4,543,730 + AO353_20720 0.16 +0.8
4,543,730 + AO353_20720 0.16 -1.2
4,543,730 + AO353_20720 0.16 +0.6
4,543,730 + AO353_20720 0.16 -0.9
4,543,730 + AO353_20720 0.16 +0.1
4,543,731 - AO353_20720 0.16 +1.1
4,543,731 - AO353_20720 0.16 -0.4
4,543,731 - AO353_20720 0.16 +0.2
4,543,731 - AO353_20720 0.16 +0.9
4,543,731 - AO353_20720 0.16 +0.9
4,543,731 - AO353_20720 0.16 +1.3
4,543,731 - AO353_20720 0.16 +0.9
4,543,731 - AO353_20720 0.16 -1.9
4,543,731 - AO353_20720 0.16 -1.9

Or see this region's nucleotide sequence