Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19750

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19745 and AO353_19750 are separated by 130 nucleotidesAO353_19750 and AO353_19755 are separated by 108 nucleotides AO353_19745: AO353_19745 - Rieske (2Fe-2S) protein, at 4,340,767 to 4,341,900 _19745 AO353_19750: AO353_19750 - diaminopimelate epimerase, at 4,342,031 to 4,343,023 _19750 AO353_19755: AO353_19755 - cytosine deaminase, at 4,343,132 to 4,344,370 _19755 Position (kb) 4342 4343 4344Strain fitness (log2 ratio) -2 -1 0 1 2at 4341.118 kb on + strand, within AO353_19745at 4341.134 kb on - strand, within AO353_19745at 4341.134 kb on - strand, within AO353_19745at 4341.134 kb on - strand, within AO353_19745at 4341.155 kb on + strand, within AO353_19745at 4341.155 kb on + strand, within AO353_19745at 4341.155 kb on + strand, within AO353_19745at 4341.155 kb on + strand, within AO353_19745at 4341.155 kb on + strand, within AO353_19745at 4341.156 kb on - strand, within AO353_19745at 4341.156 kb on - strand, within AO353_19745at 4341.156 kb on - strand, within AO353_19745at 4341.195 kb on + strand, within AO353_19745at 4341.251 kb on + strand, within AO353_19745at 4341.252 kb on - strand, within AO353_19745at 4341.346 kb on + strand, within AO353_19745at 4341.346 kb on + strand, within AO353_19745at 4341.346 kb on + strand, within AO353_19745at 4341.347 kb on - strand, within AO353_19745at 4341.396 kb on + strand, within AO353_19745at 4341.397 kb on - strand, within AO353_19745at 4341.397 kb on - strand, within AO353_19745at 4341.397 kb on - strand, within AO353_19745at 4341.586 kb on + strand, within AO353_19745at 4341.586 kb on + strand, within AO353_19745at 4341.586 kb on + strand, within AO353_19745at 4341.586 kb on + strand, within AO353_19745at 4341.587 kb on - strand, within AO353_19745at 4341.611 kb on + strand, within AO353_19745at 4341.683 kb on + strand, within AO353_19745at 4341.700 kb on + strand, within AO353_19745at 4341.700 kb on + strand, within AO353_19745at 4341.700 kb on + strand, within AO353_19745at 4341.701 kb on - strand, within AO353_19745at 4341.701 kb on - strand, within AO353_19745at 4341.701 kb on - strand, within AO353_19745at 4341.702 kb on + strand, within AO353_19745at 4341.735 kb on + strand, within AO353_19745at 4341.735 kb on + strand, within AO353_19745at 4341.735 kb on + strand, within AO353_19745at 4341.735 kb on + strand, within AO353_19745at 4341.736 kb on - strand, within AO353_19745at 4341.736 kb on - strand, within AO353_19745at 4341.736 kb on - strand, within AO353_19745at 4341.753 kb on + strand, within AO353_19745at 4341.754 kb on - strand, within AO353_19745at 4341.754 kb on - strand, within AO353_19745at 4341.754 kb on - strand, within AO353_19745at 4341.906 kb on - strandat 4341.991 kb on - strandat 4341.991 kb on - strandat 4341.991 kb on - strandat 4341.995 kb on + strandat 4341.996 kb on - strandat 4342.043 kb on + strandat 4342.043 kb on + strandat 4342.060 kb on + strandat 4342.060 kb on + strandat 4342.061 kb on - strandat 4342.061 kb on - strandat 4342.061 kb on - strandat 4342.061 kb on - strandat 4342.135 kb on + strand, within AO353_19750at 4342.135 kb on + strand, within AO353_19750at 4342.136 kb on - strand, within AO353_19750at 4342.676 kb on - strand, within AO353_19750at 4343.059 kb on - strandat 4343.097 kb on - strandat 4343.196 kb on + strandat 4343.230 kb on - strandat 4343.318 kb on - strand, within AO353_19755at 4343.616 kb on + strand, within AO353_19755at 4343.616 kb on + strand, within AO353_19755at 4343.617 kb on - strand, within AO353_19755at 4343.629 kb on - strand, within AO353_19755at 4343.629 kb on - strand, within AO353_19755at 4343.823 kb on + strand, within AO353_19755at 4343.823 kb on + strand, within AO353_19755at 4343.823 kb on + strand, within AO353_19755

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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4,341,118 + AO353_19745 0.31 -0.4
4,341,134 - AO353_19745 0.32 -1.6
4,341,134 - AO353_19745 0.32 +1.1
4,341,134 - AO353_19745 0.32 +0.1
4,341,155 + AO353_19745 0.34 +0.2
4,341,155 + AO353_19745 0.34 +0.1
4,341,155 + AO353_19745 0.34 -0.1
4,341,155 + AO353_19745 0.34 -0.0
4,341,155 + AO353_19745 0.34 -1.1
4,341,156 - AO353_19745 0.34 -0.7
4,341,156 - AO353_19745 0.34 -0.5
4,341,156 - AO353_19745 0.34 -0.6
4,341,195 + AO353_19745 0.38 -0.3
4,341,251 + AO353_19745 0.43 -1.1
4,341,252 - AO353_19745 0.43 +0.9
4,341,346 + AO353_19745 0.51 +1.4
4,341,346 + AO353_19745 0.51 +1.2
4,341,346 + AO353_19745 0.51 -2.0
4,341,347 - AO353_19745 0.51 -2.1
4,341,396 + AO353_19745 0.55 -1.1
4,341,397 - AO353_19745 0.56 -2.0
4,341,397 - AO353_19745 0.56 +0.7
4,341,397 - AO353_19745 0.56 -0.3
4,341,586 + AO353_19745 0.72 -0.5
4,341,586 + AO353_19745 0.72 +0.5
4,341,586 + AO353_19745 0.72 +2.0
4,341,586 + AO353_19745 0.72 -0.1
4,341,587 - AO353_19745 0.72 +0.9
4,341,611 + AO353_19745 0.74 -2.4
4,341,683 + AO353_19745 0.81 -0.2
4,341,700 + AO353_19745 0.82 -2.7
4,341,700 + AO353_19745 0.82 +0.7
4,341,700 + AO353_19745 0.82 -0.4
4,341,701 - AO353_19745 0.82 +0.7
4,341,701 - AO353_19745 0.82 -0.0
4,341,701 - AO353_19745 0.82 -1.2
4,341,702 + AO353_19745 0.82 -0.5
4,341,735 + AO353_19745 0.85 -0.7
4,341,735 + AO353_19745 0.85 -0.3
4,341,735 + AO353_19745 0.85 +1.1
4,341,735 + AO353_19745 0.85 +0.9
4,341,736 - AO353_19745 0.85 +0.3
4,341,736 - AO353_19745 0.85 -1.5
4,341,736 - AO353_19745 0.85 +0.7
4,341,753 + AO353_19745 0.87 +1.0
4,341,754 - AO353_19745 0.87 +0.7
4,341,754 - AO353_19745 0.87 -0.1
4,341,754 - AO353_19745 0.87 -0.3
4,341,906 - -0.3
4,341,991 - +1.7
4,341,991 - -0.6
4,341,991 - -1.3
4,341,995 + +0.4
4,341,996 - -0.3
4,342,043 + -0.6
4,342,043 + +0.7
4,342,060 + +0.4
4,342,060 + -0.2
4,342,061 - -0.4
4,342,061 - +0.3
4,342,061 - -1.0
4,342,061 - +0.6
4,342,135 + AO353_19750 0.10 -1.1
4,342,135 + AO353_19750 0.10 -0.6
4,342,136 - AO353_19750 0.11 +0.1
4,342,676 - AO353_19750 0.65 -0.2
4,343,059 - -1.5
4,343,097 - -2.7
4,343,196 + -1.7
4,343,230 - +1.4
4,343,318 - AO353_19755 0.15 +0.6
4,343,616 + AO353_19755 0.39 -0.9
4,343,616 + AO353_19755 0.39 +0.4
4,343,617 - AO353_19755 0.39 +0.4
4,343,629 - AO353_19755 0.40 -1.3
4,343,629 - AO353_19755 0.40 -0.4
4,343,823 + AO353_19755 0.56 +0.2
4,343,823 + AO353_19755 0.56 +0.2
4,343,823 + AO353_19755 0.56 -2.5

Or see this region's nucleotide sequence