Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19745 and AO353_19750 are separated by 130 nucleotides AO353_19750 and AO353_19755 are separated by 108 nucleotides
AO353_19745: AO353_19745 - Rieske (2Fe-2S) protein, at 4,340,767 to 4,341,900
_19745
AO353_19750: AO353_19750 - diaminopimelate epimerase, at 4,342,031 to 4,343,023
_19750
AO353_19755: AO353_19755 - cytosine deaminase, at 4,343,132 to 4,344,370
_19755
Position (kb)
4342
4343
4344 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4341.118 kb on + strand, within AO353_19745 at 4341.134 kb on - strand, within AO353_19745 at 4341.134 kb on - strand, within AO353_19745 at 4341.134 kb on - strand, within AO353_19745 at 4341.155 kb on + strand, within AO353_19745 at 4341.155 kb on + strand, within AO353_19745 at 4341.155 kb on + strand, within AO353_19745 at 4341.155 kb on + strand, within AO353_19745 at 4341.155 kb on + strand, within AO353_19745 at 4341.156 kb on - strand, within AO353_19745 at 4341.156 kb on - strand, within AO353_19745 at 4341.156 kb on - strand, within AO353_19745 at 4341.195 kb on + strand, within AO353_19745 at 4341.251 kb on + strand, within AO353_19745 at 4341.252 kb on - strand, within AO353_19745 at 4341.346 kb on + strand, within AO353_19745 at 4341.346 kb on + strand, within AO353_19745 at 4341.346 kb on + strand, within AO353_19745 at 4341.347 kb on - strand, within AO353_19745 at 4341.396 kb on + strand, within AO353_19745 at 4341.397 kb on - strand, within AO353_19745 at 4341.397 kb on - strand, within AO353_19745 at 4341.397 kb on - strand, within AO353_19745 at 4341.586 kb on + strand, within AO353_19745 at 4341.586 kb on + strand, within AO353_19745 at 4341.586 kb on + strand, within AO353_19745 at 4341.586 kb on + strand, within AO353_19745 at 4341.587 kb on - strand, within AO353_19745 at 4341.611 kb on + strand, within AO353_19745 at 4341.683 kb on + strand, within AO353_19745 at 4341.700 kb on + strand, within AO353_19745 at 4341.700 kb on + strand, within AO353_19745 at 4341.700 kb on + strand, within AO353_19745 at 4341.701 kb on - strand, within AO353_19745 at 4341.701 kb on - strand, within AO353_19745 at 4341.701 kb on - strand, within AO353_19745 at 4341.702 kb on + strand, within AO353_19745 at 4341.735 kb on + strand, within AO353_19745 at 4341.735 kb on + strand, within AO353_19745 at 4341.735 kb on + strand, within AO353_19745 at 4341.735 kb on + strand, within AO353_19745 at 4341.736 kb on - strand, within AO353_19745 at 4341.736 kb on - strand, within AO353_19745 at 4341.736 kb on - strand, within AO353_19745 at 4341.753 kb on + strand, within AO353_19745 at 4341.754 kb on - strand, within AO353_19745 at 4341.754 kb on - strand, within AO353_19745 at 4341.754 kb on - strand, within AO353_19745 at 4341.906 kb on - strand at 4341.991 kb on - strand at 4341.991 kb on - strand at 4341.991 kb on - strand at 4341.995 kb on + strand at 4341.996 kb on - strand at 4342.043 kb on + strand at 4342.043 kb on + strand at 4342.060 kb on + strand at 4342.060 kb on + strand at 4342.061 kb on - strand at 4342.061 kb on - strand at 4342.061 kb on - strand at 4342.061 kb on - strand at 4342.135 kb on + strand, within AO353_19750 at 4342.135 kb on + strand, within AO353_19750 at 4342.136 kb on - strand, within AO353_19750 at 4342.676 kb on - strand, within AO353_19750 at 4343.059 kb on - strand at 4343.097 kb on - strand at 4343.196 kb on + strand at 4343.230 kb on - strand at 4343.318 kb on - strand, within AO353_19755 at 4343.616 kb on + strand, within AO353_19755 at 4343.616 kb on + strand, within AO353_19755 at 4343.617 kb on - strand, within AO353_19755 at 4343.629 kb on - strand, within AO353_19755 at 4343.629 kb on - strand, within AO353_19755 at 4343.823 kb on + strand, within AO353_19755 at 4343.823 kb on + strand, within AO353_19755 at 4343.823 kb on + strand, within AO353_19755
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 4,341,118 + AO353_19745 0.31 -0.4 4,341,134 - AO353_19745 0.32 -1.6 4,341,134 - AO353_19745 0.32 +1.1 4,341,134 - AO353_19745 0.32 +0.1 4,341,155 + AO353_19745 0.34 +0.2 4,341,155 + AO353_19745 0.34 +0.1 4,341,155 + AO353_19745 0.34 -0.1 4,341,155 + AO353_19745 0.34 -0.0 4,341,155 + AO353_19745 0.34 -1.1 4,341,156 - AO353_19745 0.34 -0.7 4,341,156 - AO353_19745 0.34 -0.5 4,341,156 - AO353_19745 0.34 -0.6 4,341,195 + AO353_19745 0.38 -0.3 4,341,251 + AO353_19745 0.43 -1.1 4,341,252 - AO353_19745 0.43 +0.9 4,341,346 + AO353_19745 0.51 +1.4 4,341,346 + AO353_19745 0.51 +1.2 4,341,346 + AO353_19745 0.51 -2.0 4,341,347 - AO353_19745 0.51 -2.1 4,341,396 + AO353_19745 0.55 -1.1 4,341,397 - AO353_19745 0.56 -2.0 4,341,397 - AO353_19745 0.56 +0.7 4,341,397 - AO353_19745 0.56 -0.3 4,341,586 + AO353_19745 0.72 -0.5 4,341,586 + AO353_19745 0.72 +0.5 4,341,586 + AO353_19745 0.72 +2.0 4,341,586 + AO353_19745 0.72 -0.1 4,341,587 - AO353_19745 0.72 +0.9 4,341,611 + AO353_19745 0.74 -2.4 4,341,683 + AO353_19745 0.81 -0.2 4,341,700 + AO353_19745 0.82 -2.7 4,341,700 + AO353_19745 0.82 +0.7 4,341,700 + AO353_19745 0.82 -0.4 4,341,701 - AO353_19745 0.82 +0.7 4,341,701 - AO353_19745 0.82 -0.0 4,341,701 - AO353_19745 0.82 -1.2 4,341,702 + AO353_19745 0.82 -0.5 4,341,735 + AO353_19745 0.85 -0.7 4,341,735 + AO353_19745 0.85 -0.3 4,341,735 + AO353_19745 0.85 +1.1 4,341,735 + AO353_19745 0.85 +0.9 4,341,736 - AO353_19745 0.85 +0.3 4,341,736 - AO353_19745 0.85 -1.5 4,341,736 - AO353_19745 0.85 +0.7 4,341,753 + AO353_19745 0.87 +1.0 4,341,754 - AO353_19745 0.87 +0.7 4,341,754 - AO353_19745 0.87 -0.1 4,341,754 - AO353_19745 0.87 -0.3 4,341,906 - -0.3 4,341,991 - +1.7 4,341,991 - -0.6 4,341,991 - -1.3 4,341,995 + +0.4 4,341,996 - -0.3 4,342,043 + -0.6 4,342,043 + +0.7 4,342,060 + +0.4 4,342,060 + -0.2 4,342,061 - -0.4 4,342,061 - +0.3 4,342,061 - -1.0 4,342,061 - +0.6 4,342,135 + AO353_19750 0.10 -1.1 4,342,135 + AO353_19750 0.10 -0.6 4,342,136 - AO353_19750 0.11 +0.1 4,342,676 - AO353_19750 0.65 -0.2 4,343,059 - -1.5 4,343,097 - -2.7 4,343,196 + -1.7 4,343,230 - +1.4 4,343,318 - AO353_19755 0.15 +0.6 4,343,616 + AO353_19755 0.39 -0.9 4,343,616 + AO353_19755 0.39 +0.4 4,343,617 - AO353_19755 0.39 +0.4 4,343,629 - AO353_19755 0.40 -1.3 4,343,629 - AO353_19755 0.40 -0.4 4,343,823 + AO353_19755 0.56 +0.2 4,343,823 + AO353_19755 0.56 +0.2 4,343,823 + AO353_19755 0.56 -2.5
Or see this region's nucleotide sequence