Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19495 and AO353_19500 overlap by 11 nucleotides AO353_19500 and AO353_19505 overlap by 4 nucleotides AO353_19505 and AO353_19510 are separated by 93 nucleotides
AO353_19495: AO353_19495 - ABC transporter ATP-binding protein, at 4,271,724 to 4,273,442
_19495
AO353_19500: AO353_19500 - peptidase S8 and S53 subtilisin kexin sedolisin, at 4,273,432 to 4,274,109
_19500
AO353_19505: AO353_19505 - FAD-dependent oxidoreductase, at 4,274,106 to 4,275,401
_19505
AO353_19510: AO353_19510 - aldehyde dehydrogenase, at 4,275,495 to 4,276,985
_19510
Position (kb)
4274
4275
4276 Strain fitness (log2 ratio)
-2
-1
0
1 at 4273.334 kb on + strand at 4273.334 kb on + strand at 4273.334 kb on + strand at 4273.334 kb on + strand at 4273.421 kb on + strand at 4273.421 kb on + strand at 4273.421 kb on + strand at 4273.421 kb on + strand at 4273.422 kb on - strand at 4273.422 kb on - strand at 4273.422 kb on - strand at 4273.422 kb on - strand at 4273.446 kb on - strand at 4273.517 kb on - strand, within AO353_19500 at 4273.951 kb on + strand, within AO353_19500 at 4273.951 kb on + strand, within AO353_19500 at 4273.951 kb on + strand, within AO353_19500 at 4273.952 kb on - strand, within AO353_19500 at 4273.952 kb on - strand, within AO353_19500 at 4273.952 kb on - strand, within AO353_19500 at 4274.178 kb on + strand at 4274.680 kb on - strand, within AO353_19505 at 4274.742 kb on + strand, within AO353_19505 at 4274.743 kb on - strand, within AO353_19505 at 4274.743 kb on - strand, within AO353_19505 at 4274.984 kb on + strand, within AO353_19505 at 4275.075 kb on + strand, within AO353_19505 at 4275.076 kb on - strand, within AO353_19505 at 4275.076 kb on - strand, within AO353_19505 at 4275.376 kb on + strand at 4275.399 kb on + strand at 4275.400 kb on - strand at 4275.458 kb on + strand at 4275.459 kb on - strand at 4275.496 kb on + strand at 4275.497 kb on - strand at 4275.497 kb on - strand at 4275.529 kb on + strand at 4275.530 kb on - strand at 4275.530 kb on - strand at 4275.530 kb on - strand at 4275.547 kb on + strand at 4275.581 kb on - strand at 4275.692 kb on + strand, within AO353_19510 at 4275.692 kb on + strand, within AO353_19510 at 4275.693 kb on - strand, within AO353_19510 at 4275.709 kb on + strand, within AO353_19510 at 4275.728 kb on + strand, within AO353_19510 at 4275.913 kb on + strand, within AO353_19510 at 4275.913 kb on + strand, within AO353_19510 at 4275.913 kb on + strand, within AO353_19510 at 4275.913 kb on + strand, within AO353_19510 at 4275.913 kb on + strand, within AO353_19510 at 4275.913 kb on + strand, within AO353_19510 at 4275.913 kb on + strand, within AO353_19510 at 4275.914 kb on - strand, within AO353_19510 at 4275.914 kb on - strand, within AO353_19510 at 4275.914 kb on - strand, within AO353_19510 at 4275.914 kb on - strand, within AO353_19510 at 4275.914 kb on - strand, within AO353_19510 at 4275.914 kb on - strand, within AO353_19510 at 4275.914 kb on - strand, within AO353_19510 at 4275.919 kb on + strand, within AO353_19510 at 4275.919 kb on + strand, within AO353_19510 at 4275.920 kb on - strand, within AO353_19510 at 4275.920 kb on - strand, within AO353_19510 at 4275.920 kb on - strand, within AO353_19510 at 4275.920 kb on - strand, within AO353_19510 at 4275.920 kb on - strand, within AO353_19510 at 4276.054 kb on + strand, within AO353_19510 at 4276.055 kb on - strand, within AO353_19510 at 4276.055 kb on - strand, within AO353_19510 at 4276.055 kb on - strand, within AO353_19510 at 4276.055 kb on - strand, within AO353_19510 at 4276.055 kb on - strand, within AO353_19510 at 4276.326 kb on + strand, within AO353_19510 at 4276.326 kb on + strand, within AO353_19510 at 4276.327 kb on - strand, within AO353_19510
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 4,273,334 + -1.7 4,273,334 + +0.6 4,273,334 + +1.3 4,273,334 + -1.3 4,273,421 + -0.0 4,273,421 + -1.6 4,273,421 + -0.6 4,273,421 + -0.3 4,273,422 - +0.5 4,273,422 - -0.4 4,273,422 - +0.1 4,273,422 - -0.6 4,273,446 - -0.7 4,273,517 - AO353_19500 0.13 -0.7 4,273,951 + AO353_19500 0.77 -0.7 4,273,951 + AO353_19500 0.77 -1.4 4,273,951 + AO353_19500 0.77 +0.2 4,273,952 - AO353_19500 0.77 -0.2 4,273,952 - AO353_19500 0.77 +0.5 4,273,952 - AO353_19500 0.77 -1.1 4,274,178 + -2.0 4,274,680 - AO353_19505 0.44 -1.0 4,274,742 + AO353_19505 0.49 -2.3 4,274,743 - AO353_19505 0.49 -2.2 4,274,743 - AO353_19505 0.49 -0.9 4,274,984 + AO353_19505 0.68 -0.6 4,275,075 + AO353_19505 0.75 -1.5 4,275,076 - AO353_19505 0.75 -1.3 4,275,076 - AO353_19505 0.75 +0.7 4,275,376 + -0.1 4,275,399 + -1.3 4,275,400 - +1.6 4,275,458 + +1.5 4,275,459 - +0.6 4,275,496 + -1.1 4,275,497 - -2.1 4,275,497 - +0.9 4,275,529 + -0.6 4,275,530 - +0.2 4,275,530 - -0.4 4,275,530 - +1.2 4,275,547 + -1.1 4,275,581 - +0.4 4,275,692 + AO353_19510 0.13 +0.5 4,275,692 + AO353_19510 0.13 -0.1 4,275,693 - AO353_19510 0.13 +1.2 4,275,709 + AO353_19510 0.14 -2.4 4,275,728 + AO353_19510 0.16 +0.9 4,275,913 + AO353_19510 0.28 -0.6 4,275,913 + AO353_19510 0.28 -1.1 4,275,913 + AO353_19510 0.28 +1.6 4,275,913 + AO353_19510 0.28 +0.2 4,275,913 + AO353_19510 0.28 +1.2 4,275,913 + AO353_19510 0.28 +0.9 4,275,913 + AO353_19510 0.28 -0.5 4,275,914 - AO353_19510 0.28 +1.7 4,275,914 - AO353_19510 0.28 -1.6 4,275,914 - AO353_19510 0.28 +1.7 4,275,914 - AO353_19510 0.28 -1.6 4,275,914 - AO353_19510 0.28 -0.9 4,275,914 - AO353_19510 0.28 -0.6 4,275,914 - AO353_19510 0.28 -0.1 4,275,919 + AO353_19510 0.28 -0.5 4,275,919 + AO353_19510 0.28 +0.3 4,275,920 - AO353_19510 0.29 -0.8 4,275,920 - AO353_19510 0.29 +0.1 4,275,920 - AO353_19510 0.29 -1.3 4,275,920 - AO353_19510 0.29 +0.5 4,275,920 - AO353_19510 0.29 -2.1 4,276,054 + AO353_19510 0.37 -0.4 4,276,055 - AO353_19510 0.38 +0.9 4,276,055 - AO353_19510 0.38 -2.0 4,276,055 - AO353_19510 0.38 +0.0 4,276,055 - AO353_19510 0.38 -0.5 4,276,055 - AO353_19510 0.38 -1.1 4,276,326 + AO353_19510 0.56 +0.8 4,276,326 + AO353_19510 0.56 -0.8 4,276,327 - AO353_19510 0.56 -0.5
Or see this region's nucleotide sequence