Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_16920 and AO353_16925 are separated by 125 nucleotides AO353_16925 and AO353_16930 are separated by 43 nucleotides AO353_16930 and AO353_16935 are separated by 156 nucleotides
AO353_16920: AO353_16920 - proline--tRNA ligase, at 3,743,960 to 3,745,675
_16920
AO353_16925: AO353_16925 - AmpG family muropeptide MFS transporter, at 3,745,801 to 3,747,363
_16925
AO353_16930: AO353_16930 - DNA base-flipping protein YbaZ, at 3,747,407 to 3,747,760
_16930
AO353_16935: AO353_16935 - cold-shock protein, at 3,747,917 to 3,748,126
_16935
Position (kb)
3745
3746
3747
3748 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3745.704 kb on - strand at 3745.802 kb on + strand at 3745.803 kb on - strand at 3745.803 kb on - strand at 3745.803 kb on - strand at 3745.952 kb on + strand at 3745.952 kb on + strand at 3745.952 kb on + strand at 3745.952 kb on + strand at 3745.952 kb on + strand at 3745.953 kb on - strand at 3745.953 kb on - strand at 3745.953 kb on - strand at 3745.953 kb on - strand at 3745.953 kb on - strand at 3745.953 kb on - strand at 3745.953 kb on - strand at 3746.069 kb on + strand, within AO353_16925 at 3746.069 kb on + strand, within AO353_16925 at 3746.070 kb on - strand, within AO353_16925 at 3746.070 kb on - strand, within AO353_16925 at 3746.070 kb on - strand, within AO353_16925 at 3746.070 kb on - strand, within AO353_16925 at 3746.339 kb on + strand, within AO353_16925 at 3746.339 kb on + strand, within AO353_16925 at 3746.339 kb on + strand, within AO353_16925 at 3746.339 kb on + strand, within AO353_16925 at 3746.339 kb on + strand, within AO353_16925 at 3746.339 kb on + strand, within AO353_16925 at 3746.340 kb on - strand, within AO353_16925 at 3746.340 kb on - strand, within AO353_16925 at 3746.357 kb on - strand, within AO353_16925 at 3746.516 kb on + strand, within AO353_16925 at 3746.516 kb on + strand, within AO353_16925 at 3746.516 kb on + strand, within AO353_16925 at 3746.516 kb on + strand, within AO353_16925 at 3746.516 kb on + strand, within AO353_16925 at 3746.516 kb on + strand, within AO353_16925 at 3746.517 kb on - strand, within AO353_16925 at 3746.517 kb on - strand, within AO353_16925 at 3746.517 kb on - strand, within AO353_16925 at 3746.517 kb on - strand, within AO353_16925 at 3746.517 kb on - strand, within AO353_16925 at 3746.517 kb on - strand, within AO353_16925 at 3746.530 kb on + strand, within AO353_16925 at 3746.531 kb on - strand, within AO353_16925 at 3746.531 kb on - strand, within AO353_16925 at 3746.531 kb on - strand, within AO353_16925 at 3746.606 kb on + strand, within AO353_16925 at 3746.606 kb on + strand, within AO353_16925 at 3746.606 kb on + strand, within AO353_16925 at 3746.606 kb on + strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.607 kb on - strand, within AO353_16925 at 3746.616 kb on + strand, within AO353_16925 at 3746.653 kb on + strand, within AO353_16925 at 3746.654 kb on - strand, within AO353_16925 at 3746.654 kb on - strand, within AO353_16925 at 3746.659 kb on + strand, within AO353_16925 at 3746.786 kb on + strand, within AO353_16925 at 3746.787 kb on - strand, within AO353_16925 at 3746.787 kb on - strand, within AO353_16925 at 3746.787 kb on - strand, within AO353_16925 at 3746.787 kb on - strand, within AO353_16925 at 3746.813 kb on + strand, within AO353_16925 at 3746.813 kb on + strand, within AO353_16925 at 3746.814 kb on - strand, within AO353_16925 at 3746.814 kb on - strand, within AO353_16925 at 3746.814 kb on - strand, within AO353_16925 at 3746.814 kb on - strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.898 kb on + strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.899 kb on - strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.900 kb on + strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.901 kb on - strand, within AO353_16925 at 3746.967 kb on + strand, within AO353_16925 at 3746.968 kb on - strand, within AO353_16925 at 3746.968 kb on - strand, within AO353_16925 at 3747.076 kb on + strand, within AO353_16925 at 3747.076 kb on + strand, within AO353_16925 at 3747.076 kb on + strand, within AO353_16925 at 3747.076 kb on + strand, within AO353_16925 at 3747.077 kb on - strand, within AO353_16925 at 3747.077 kb on - strand, within AO353_16925 at 3747.077 kb on - strand, within AO353_16925 at 3747.077 kb on - strand, within AO353_16925 at 3747.077 kb on - strand, within AO353_16925 at 3747.125 kb on - strand, within AO353_16925 at 3747.168 kb on + strand, within AO353_16925 at 3747.169 kb on - strand, within AO353_16925 at 3747.176 kb on + strand, within AO353_16925 at 3747.176 kb on + strand, within AO353_16925 at 3747.176 kb on + strand, within AO353_16925 at 3747.177 kb on - strand, within AO353_16925 at 3747.177 kb on - strand, within AO353_16925 at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.269 kb on + strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.270 kb on - strand at 3747.295 kb on + strand at 3747.301 kb on + strand at 3747.301 kb on + strand at 3747.301 kb on + strand at 3747.301 kb on + strand at 3747.301 kb on + strand at 3747.301 kb on + strand at 3747.301 kb on + strand at 3747.302 kb on - strand at 3747.302 kb on - strand at 3747.302 kb on - strand at 3747.302 kb on - strand at 3747.302 kb on - strand at 3747.302 kb on - strand at 3747.302 kb on - strand at 3747.304 kb on + strand at 3747.304 kb on + strand at 3747.304 kb on + strand at 3747.305 kb on - strand at 3747.326 kb on + strand at 3747.448 kb on + strand, within AO353_16930 at 3747.448 kb on + strand, within AO353_16930 at 3747.530 kb on + strand, within AO353_16930 at 3747.530 kb on + strand, within AO353_16930 at 3747.530 kb on + strand, within AO353_16930 at 3747.557 kb on + strand, within AO353_16930 at 3747.557 kb on + strand, within AO353_16930 at 3747.660 kb on + strand, within AO353_16930 at 3747.660 kb on + strand, within AO353_16930 at 3747.661 kb on - strand, within AO353_16930 at 3747.661 kb on - strand, within AO353_16930 at 3747.702 kb on + strand, within AO353_16930 at 3747.702 kb on + strand, within AO353_16930 at 3747.703 kb on - strand, within AO353_16930 at 3747.802 kb on + strand at 3747.802 kb on + strand at 3747.802 kb on + strand at 3747.802 kb on + strand at 3747.802 kb on + strand at 3747.802 kb on + strand at 3747.803 kb on - strand at 3747.803 kb on - strand at 3747.803 kb on - strand at 3747.901 kb on - strand at 3747.918 kb on + strand at 3747.918 kb on + strand at 3747.918 kb on + strand at 3747.919 kb on - strand at 3747.919 kb on - strand at 3747.919 kb on - strand at 3747.923 kb on - strand at 3748.022 kb on - strand, within AO353_16935 at 3748.100 kb on - strand, within AO353_16935 at 3748.121 kb on - strand at 3748.131 kb on + strand at 3748.132 kb on - strand at 3748.132 kb on - strand at 3748.132 kb on - strand at 3748.132 kb on - strand at 3748.132 kb on - strand at 3748.132 kb on - strand at 3748.132 kb on - strand at 3748.150 kb on - strand at 3748.150 kb on - strand at 3748.150 kb on - strand at 3748.150 kb on - strand at 3748.150 kb on - strand at 3748.150 kb on - strand at 3748.210 kb on + strand at 3748.211 kb on - strand at 3748.235 kb on + strand at 3748.235 kb on + strand at 3748.235 kb on + strand at 3748.235 kb on + strand at 3748.235 kb on + strand at 3748.235 kb on + strand at 3748.236 kb on - strand at 3748.243 kb on - strand at 3748.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 3,745,704 - +1.7 3,745,802 + +1.5 3,745,803 - +0.8 3,745,803 - -1.2 3,745,803 - -0.3 3,745,952 + +1.4 3,745,952 + +1.7 3,745,952 + +2.5 3,745,952 + +0.2 3,745,952 + +1.8 3,745,953 - +2.8 3,745,953 - +1.2 3,745,953 - +1.8 3,745,953 - +1.2 3,745,953 - +2.4 3,745,953 - +1.9 3,745,953 - +0.6 3,746,069 + AO353_16925 0.17 +1.3 3,746,069 + AO353_16925 0.17 +1.2 3,746,070 - AO353_16925 0.17 +0.4 3,746,070 - AO353_16925 0.17 +1.6 3,746,070 - AO353_16925 0.17 +2.4 3,746,070 - AO353_16925 0.17 +1.8 3,746,339 + AO353_16925 0.34 +1.9 3,746,339 + AO353_16925 0.34 +1.3 3,746,339 + AO353_16925 0.34 +0.7 3,746,339 + AO353_16925 0.34 +1.7 3,746,339 + AO353_16925 0.34 +2.5 3,746,339 + AO353_16925 0.34 +1.9 3,746,340 - AO353_16925 0.34 -0.5 3,746,340 - AO353_16925 0.34 +3.3 3,746,357 - AO353_16925 0.36 +2.3 3,746,516 + AO353_16925 0.46 +0.8 3,746,516 + AO353_16925 0.46 +1.7 3,746,516 + AO353_16925 0.46 +1.0 3,746,516 + AO353_16925 0.46 +0.5 3,746,516 + AO353_16925 0.46 +1.4 3,746,516 + AO353_16925 0.46 +2.5 3,746,517 - AO353_16925 0.46 +1.4 3,746,517 - AO353_16925 0.46 +2.1 3,746,517 - AO353_16925 0.46 +2.0 3,746,517 - AO353_16925 0.46 +1.7 3,746,517 - AO353_16925 0.46 +1.4 3,746,517 - AO353_16925 0.46 +1.2 3,746,530 + AO353_16925 0.47 +1.7 3,746,531 - AO353_16925 0.47 +1.9 3,746,531 - AO353_16925 0.47 +3.0 3,746,531 - AO353_16925 0.47 -0.2 3,746,606 + AO353_16925 0.52 +1.0 3,746,606 + AO353_16925 0.52 +1.6 3,746,606 + AO353_16925 0.52 +2.0 3,746,606 + AO353_16925 0.52 +1.9 3,746,607 - AO353_16925 0.52 +2.5 3,746,607 - AO353_16925 0.52 +3.0 3,746,607 - AO353_16925 0.52 +2.9 3,746,607 - AO353_16925 0.52 +2.0 3,746,607 - AO353_16925 0.52 +1.4 3,746,607 - AO353_16925 0.52 +1.1 3,746,607 - AO353_16925 0.52 +1.8 3,746,607 - AO353_16925 0.52 +1.7 3,746,616 + AO353_16925 0.52 +1.3 3,746,653 + AO353_16925 0.55 +2.1 3,746,654 - AO353_16925 0.55 +0.6 3,746,654 - AO353_16925 0.55 -0.2 3,746,659 + AO353_16925 0.55 +1.7 3,746,786 + AO353_16925 0.63 +1.4 3,746,787 - AO353_16925 0.63 +2.9 3,746,787 - AO353_16925 0.63 +0.4 3,746,787 - AO353_16925 0.63 +3.0 3,746,787 - AO353_16925 0.63 +3.0 3,746,813 + AO353_16925 0.65 +1.1 3,746,813 + AO353_16925 0.65 +0.9 3,746,814 - AO353_16925 0.65 +1.4 3,746,814 - AO353_16925 0.65 +1.6 3,746,814 - AO353_16925 0.65 +1.8 3,746,814 - AO353_16925 0.65 +0.8 3,746,898 + AO353_16925 0.70 +1.9 3,746,898 + AO353_16925 0.70 +2.3 3,746,898 + AO353_16925 0.70 +1.5 3,746,898 + AO353_16925 0.70 +1.0 3,746,898 + AO353_16925 0.70 +2.0 3,746,898 + AO353_16925 0.70 +2.2 3,746,898 + AO353_16925 0.70 +3.0 3,746,898 + +1.3 3,746,898 + AO353_16925 0.70 -1.0 3,746,898 + AO353_16925 0.70 +1.4 3,746,898 + AO353_16925 0.70 +2.1 3,746,898 + AO353_16925 0.70 +1.7 3,746,898 + AO353_16925 0.70 +2.8 3,746,898 + AO353_16925 0.70 +1.6 3,746,899 - AO353_16925 0.70 +2.3 3,746,899 - AO353_16925 0.70 +2.4 3,746,899 - AO353_16925 0.70 +1.9 3,746,899 - AO353_16925 0.70 +1.7 3,746,899 - AO353_16925 0.70 +1.3 3,746,899 - AO353_16925 0.70 +2.2 3,746,899 - AO353_16925 0.70 +1.9 3,746,899 - AO353_16925 0.70 +2.0 3,746,899 - AO353_16925 0.70 +2.4 3,746,899 - AO353_16925 0.70 +2.1 3,746,899 - AO353_16925 0.70 +1.7 3,746,899 - AO353_16925 0.70 +2.2 3,746,899 - AO353_16925 0.70 +0.9 3,746,899 - AO353_16925 0.70 +0.5 3,746,899 - AO353_16925 0.70 +0.6 3,746,899 - AO353_16925 0.70 +2.7 3,746,899 - AO353_16925 0.70 +2.3 3,746,899 - AO353_16925 0.70 +2.1 3,746,899 - AO353_16925 0.70 +1.7 3,746,899 - AO353_16925 0.70 +1.3 3,746,900 + AO353_16925 0.70 +1.2 3,746,900 + AO353_16925 0.70 +1.9 3,746,900 + AO353_16925 0.70 +2.1 3,746,900 + AO353_16925 0.70 +3.0 3,746,900 + AO353_16925 0.70 +3.0 3,746,900 + AO353_16925 0.70 +1.5 3,746,900 + AO353_16925 0.70 +2.1 3,746,900 + AO353_16925 0.70 +1.8 3,746,901 - AO353_16925 0.70 +2.1 3,746,901 - AO353_16925 0.70 +1.8 3,746,901 - +2.0 3,746,901 - AO353_16925 0.70 +2.7 3,746,901 - AO353_16925 0.70 +2.2 3,746,901 - AO353_16925 0.70 +3.1 3,746,901 - AO353_16925 0.70 +1.7 3,746,901 - AO353_16925 0.70 +2.8 3,746,901 - AO353_16925 0.70 +2.4 3,746,901 - AO353_16925 0.70 +3.0 3,746,967 + AO353_16925 0.75 +2.1 3,746,968 - AO353_16925 0.75 +2.6 3,746,968 - AO353_16925 0.75 +2.1 3,747,076 + AO353_16925 0.82 +1.5 3,747,076 + AO353_16925 0.82 +2.0 3,747,076 + AO353_16925 0.82 +1.1 3,747,076 + AO353_16925 0.82 +2.4 3,747,077 - AO353_16925 0.82 +2.2 3,747,077 - AO353_16925 0.82 +1.4 3,747,077 - AO353_16925 0.82 +1.0 3,747,077 - AO353_16925 0.82 +2.7 3,747,077 - AO353_16925 0.82 +1.2 3,747,125 - AO353_16925 0.85 +3.5 3,747,168 + AO353_16925 0.87 +1.9 3,747,169 - AO353_16925 0.88 +2.7 3,747,176 + AO353_16925 0.88 +2.1 3,747,176 + AO353_16925 0.88 +4.0 3,747,176 + AO353_16925 0.88 +0.8 3,747,177 - AO353_16925 0.88 +2.7 3,747,177 - AO353_16925 0.88 +2.5 3,747,269 + +1.8 3,747,269 + +1.0 3,747,269 + +2.1 3,747,269 + +2.6 3,747,269 + +0.4 3,747,269 + +1.9 3,747,269 + +2.8 3,747,269 + +1.1 3,747,269 + +1.4 3,747,269 + +1.4 3,747,269 + +0.4 3,747,270 - +2.4 3,747,270 - +2.4 3,747,270 - +2.1 3,747,270 - +2.1 3,747,270 - +1.4 3,747,270 - +2.6 3,747,270 - +2.6 3,747,270 - +1.3 3,747,270 - +2.0 3,747,270 - +1.3 3,747,270 - +2.9 3,747,295 + +1.3 3,747,301 + +0.9 3,747,301 + +2.1 3,747,301 + +1.9 3,747,301 + +1.0 3,747,301 + +0.5 3,747,301 + +2.3 3,747,301 + +2.4 3,747,302 - +1.8 3,747,302 - +2.4 3,747,302 - +1.7 3,747,302 - -1.6 3,747,302 - +2.5 3,747,302 - +1.8 3,747,302 - +1.7 3,747,304 + +1.4 3,747,304 + +2.4 3,747,304 + +1.4 3,747,305 - +2.1 3,747,326 + +1.8 3,747,448 + AO353_16930 0.12 +0.6 3,747,448 + AO353_16930 0.12 -0.6 3,747,530 + AO353_16930 0.35 +0.6 3,747,530 + AO353_16930 0.35 +0.4 3,747,530 + AO353_16930 0.35 -1.8 3,747,557 + AO353_16930 0.42 +0.3 3,747,557 + AO353_16930 0.42 +0.2 3,747,660 + AO353_16930 0.71 +1.5 3,747,660 + AO353_16930 0.71 +0.2 3,747,661 - AO353_16930 0.72 +0.0 3,747,661 - AO353_16930 0.72 +1.4 3,747,702 + AO353_16930 0.83 +1.2 3,747,702 + AO353_16930 0.83 +1.0 3,747,703 - AO353_16930 0.84 +1.4 3,747,802 + -1.7 3,747,802 + +0.8 3,747,802 + +2.0 3,747,802 + +1.1 3,747,802 + +4.2 3,747,802 + +2.0 3,747,803 - +0.7 3,747,803 - +0.5 3,747,803 - +1.7 3,747,901 - +3.5 3,747,918 + +2.3 3,747,918 + -0.8 3,747,918 + +1.8 3,747,919 - +3.4 3,747,919 - +2.7 3,747,919 - +3.5 3,747,923 - +4.0 3,748,022 - AO353_16935 0.50 +2.3 3,748,100 - AO353_16935 0.87 +4.0 3,748,121 - +2.8 3,748,131 + +3.5 3,748,132 - +2.3 3,748,132 - +3.4 3,748,132 - +3.6 3,748,132 - +3.0 3,748,132 - +3.4 3,748,132 - +0.8 3,748,132 - +2.9 3,748,150 - +3.9 3,748,150 - +2.9 3,748,150 - +4.2 3,748,150 - +3.6 3,748,150 - +2.3 3,748,150 - +2.7 3,748,210 + +2.6 3,748,211 - +3.2 3,748,235 + +2.6 3,748,235 + +2.9 3,748,235 + +3.2 3,748,235 + +2.9 3,748,235 + +3.2 3,748,235 + +2.5 3,748,236 - +3.3 3,748,243 - +2.0 3,748,355 - +1.9
Or see this region's nucleotide sequence