Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16765

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16760 and AO353_16765 are separated by 106 nucleotidesAO353_16765 and AO353_16770 overlap by 1 nucleotidesAO353_16770 and AO353_16775 overlap by 11 nucleotides AO353_16760: AO353_16760 - baseplate protein, at 3,714,979 to 3,716,019 _16760 AO353_16765: AO353_16765 - hypothetical protein, at 3,716,126 to 3,716,635 _16765 AO353_16770: AO353_16770 - hypothetical protein, at 3,716,635 to 3,717,033 _16770 AO353_16775: AO353_16775 - baseplate J protein, at 3,717,023 to 3,718,063 _16775 Position (kb) 3716 3717Strain fitness (log2 ratio) -2 -1 0 1 2at 3715.198 kb on + strand, within AO353_16760at 3715.198 kb on + strand, within AO353_16760at 3715.198 kb on + strand, within AO353_16760at 3715.198 kb on + strand, within AO353_16760at 3715.198 kb on + strand, within AO353_16760at 3715.198 kb on + strand, within AO353_16760at 3715.198 kb on + strand, within AO353_16760at 3715.198 kb on + strand, within AO353_16760at 3715.199 kb on - strand, within AO353_16760at 3715.199 kb on - strand, within AO353_16760at 3715.199 kb on - strand, within AO353_16760at 3715.199 kb on - strand, within AO353_16760at 3715.199 kb on - strand, within AO353_16760at 3715.199 kb on - strand, within AO353_16760at 3715.199 kb on - strand, within AO353_16760at 3715.216 kb on + strand, within AO353_16760at 3715.216 kb on + strand, within AO353_16760at 3715.216 kb on + strand, within AO353_16760at 3715.216 kb on + strand, within AO353_16760at 3715.216 kb on + strand, within AO353_16760at 3715.217 kb on - strand, within AO353_16760at 3715.217 kb on - strand, within AO353_16760at 3715.217 kb on - strand, within AO353_16760at 3715.217 kb on - strand, within AO353_16760at 3715.217 kb on - strand, within AO353_16760at 3715.355 kb on - strand, within AO353_16760at 3715.401 kb on + strand, within AO353_16760at 3715.401 kb on + strand, within AO353_16760at 3715.401 kb on + strand, within AO353_16760at 3715.402 kb on - strand, within AO353_16760at 3715.402 kb on - strand, within AO353_16760at 3715.813 kb on + strand, within AO353_16760at 3715.813 kb on + strand, within AO353_16760at 3715.814 kb on - strand, within AO353_16760at 3715.930 kb on + strandat 3715.930 kb on + strandat 3715.930 kb on + strandat 3715.930 kb on + strandat 3715.931 kb on - strandat 3715.931 kb on - strandat 3715.931 kb on - strandat 3715.931 kb on - strandat 3715.931 kb on - strandat 3715.931 kb on - strandat 3715.931 kb on - strandat 3715.956 kb on + strandat 3715.983 kb on + strandat 3715.984 kb on - strandat 3715.984 kb on - strandat 3716.037 kb on - strandat 3716.037 kb on - strandat 3716.037 kb on - strandat 3716.111 kb on + strandat 3716.111 kb on + strandat 3716.112 kb on - strandat 3716.112 kb on - strandat 3716.133 kb on + strandat 3716.134 kb on - strandat 3716.294 kb on - strand, within AO353_16765at 3716.335 kb on - strand, within AO353_16765at 3716.335 kb on - strand, within AO353_16765at 3716.396 kb on + strand, within AO353_16765at 3716.396 kb on + strand, within AO353_16765at 3716.396 kb on + strand, within AO353_16765at 3716.557 kb on + strand, within AO353_16765at 3716.640 kb on + strandat 3716.641 kb on - strandat 3716.641 kb on - strandat 3716.641 kb on - strandat 3716.858 kb on - strand, within AO353_16770at 3717.022 kb on + strandat 3717.022 kb on + strandat 3717.022 kb on + strandat 3717.022 kb on + strandat 3717.022 kb on + strandat 3717.023 kb on - strandat 3717.023 kb on - strandat 3717.023 kb on - strandat 3717.023 kb on - strandat 3717.023 kb on - strandat 3717.152 kb on + strand, within AO353_16775at 3717.152 kb on + strand, within AO353_16775at 3717.152 kb on + strand, within AO353_16775at 3717.152 kb on + strand, within AO353_16775at 3717.153 kb on - strand, within AO353_16775at 3717.158 kb on + strand, within AO353_16775at 3717.158 kb on + strand, within AO353_16775at 3717.159 kb on - strand, within AO353_16775at 3717.251 kb on - strand, within AO353_16775at 3717.350 kb on + strand, within AO353_16775at 3717.350 kb on + strand, within AO353_16775at 3717.350 kb on + strand, within AO353_16775at 3717.351 kb on - strand, within AO353_16775at 3717.351 kb on - strand, within AO353_16775at 3717.609 kb on - strand, within AO353_16775

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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3,715,198 + AO353_16760 0.21 -2.0
3,715,198 + AO353_16760 0.21 -0.6
3,715,198 + AO353_16760 0.21 +0.7
3,715,198 + AO353_16760 0.21 -0.8
3,715,198 + AO353_16760 0.21 -1.8
3,715,198 + AO353_16760 0.21 +0.2
3,715,198 + AO353_16760 0.21 -0.9
3,715,198 + AO353_16760 0.21 +0.6
3,715,199 - AO353_16760 0.21 -0.0
3,715,199 - AO353_16760 0.21 -1.6
3,715,199 - AO353_16760 0.21 -1.0
3,715,199 - AO353_16760 0.21 +0.5
3,715,199 - AO353_16760 0.21 -0.9
3,715,199 - AO353_16760 0.21 +0.4
3,715,199 - AO353_16760 0.21 -0.0
3,715,216 + AO353_16760 0.23 +0.5
3,715,216 + AO353_16760 0.23 +1.5
3,715,216 + AO353_16760 0.23 -0.6
3,715,216 + AO353_16760 0.23 +0.6
3,715,216 + AO353_16760 0.23 -0.2
3,715,217 - AO353_16760 0.23 +0.8
3,715,217 - AO353_16760 0.23 +0.3
3,715,217 - AO353_16760 0.23 -0.8
3,715,217 - AO353_16760 0.23 -2.3
3,715,217 - AO353_16760 0.23 -1.1
3,715,355 - AO353_16760 0.36 -0.9
3,715,401 + AO353_16760 0.41 -0.3
3,715,401 + AO353_16760 0.41 -2.5
3,715,401 + AO353_16760 0.41 -1.4
3,715,402 - AO353_16760 0.41 +0.3
3,715,402 - AO353_16760 0.41 -1.5
3,715,813 + AO353_16760 0.80 +0.6
3,715,813 + AO353_16760 0.80 -1.7
3,715,814 - AO353_16760 0.80 -0.5
3,715,930 + +0.3
3,715,930 + +0.4
3,715,930 + -0.6
3,715,930 + -1.5
3,715,931 - -1.0
3,715,931 - +0.8
3,715,931 - +0.1
3,715,931 - +0.8
3,715,931 - +0.0
3,715,931 - -0.4
3,715,931 - -2.0
3,715,956 + +1.0
3,715,983 + -0.9
3,715,984 - +1.0
3,715,984 - -0.8
3,716,037 - +0.3
3,716,037 - +0.4
3,716,037 - -0.0
3,716,111 + +1.6
3,716,111 + +2.0
3,716,112 - -0.1
3,716,112 - -2.3
3,716,133 + -1.7
3,716,134 - -0.9
3,716,294 - AO353_16765 0.33 -0.0
3,716,335 - AO353_16765 0.41 -1.0
3,716,335 - AO353_16765 0.41 -1.2
3,716,396 + AO353_16765 0.53 -1.8
3,716,396 + AO353_16765 0.53 -0.0
3,716,396 + AO353_16765 0.53 -0.0
3,716,557 + AO353_16765 0.85 +0.1
3,716,640 + -1.0
3,716,641 - -1.3
3,716,641 - +1.7
3,716,641 - +0.5
3,716,858 - AO353_16770 0.56 +1.3
3,717,022 + +1.0
3,717,022 + -0.6
3,717,022 + -0.0
3,717,022 + -0.3
3,717,022 + -1.2
3,717,023 - -2.0
3,717,023 - -0.2
3,717,023 - +0.5
3,717,023 - +2.0
3,717,023 - -1.0
3,717,152 + AO353_16775 0.12 +1.3
3,717,152 + AO353_16775 0.12 -0.6
3,717,152 + AO353_16775 0.12 -0.3
3,717,152 + AO353_16775 0.12 +0.5
3,717,153 - AO353_16775 0.12 +1.6
3,717,158 + AO353_16775 0.13 +0.3
3,717,158 + AO353_16775 0.13 -2.3
3,717,159 - AO353_16775 0.13 -0.3
3,717,251 - AO353_16775 0.22 -0.6
3,717,350 + AO353_16775 0.31 -1.6
3,717,350 + AO353_16775 0.31 +0.5
3,717,350 + AO353_16775 0.31 -0.8
3,717,351 - AO353_16775 0.32 -0.8
3,717,351 - AO353_16775 0.32 -0.6
3,717,609 - AO353_16775 0.56 +0.4

Or see this region's nucleotide sequence