Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_16760 and AO353_16765 are separated by 106 nucleotides AO353_16765 and AO353_16770 overlap by 1 nucleotides AO353_16770 and AO353_16775 overlap by 11 nucleotides
AO353_16760: AO353_16760 - baseplate protein, at 3,714,979 to 3,716,019
_16760
AO353_16765: AO353_16765 - hypothetical protein, at 3,716,126 to 3,716,635
_16765
AO353_16770: AO353_16770 - hypothetical protein, at 3,716,635 to 3,717,033
_16770
AO353_16775: AO353_16775 - baseplate J protein, at 3,717,023 to 3,718,063
_16775
Position (kb)
3716
3717 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3715.198 kb on + strand, within AO353_16760 at 3715.198 kb on + strand, within AO353_16760 at 3715.198 kb on + strand, within AO353_16760 at 3715.198 kb on + strand, within AO353_16760 at 3715.198 kb on + strand, within AO353_16760 at 3715.198 kb on + strand, within AO353_16760 at 3715.198 kb on + strand, within AO353_16760 at 3715.198 kb on + strand, within AO353_16760 at 3715.199 kb on - strand, within AO353_16760 at 3715.199 kb on - strand, within AO353_16760 at 3715.199 kb on - strand, within AO353_16760 at 3715.199 kb on - strand, within AO353_16760 at 3715.199 kb on - strand, within AO353_16760 at 3715.199 kb on - strand, within AO353_16760 at 3715.199 kb on - strand, within AO353_16760 at 3715.216 kb on + strand, within AO353_16760 at 3715.216 kb on + strand, within AO353_16760 at 3715.216 kb on + strand, within AO353_16760 at 3715.216 kb on + strand, within AO353_16760 at 3715.216 kb on + strand, within AO353_16760 at 3715.217 kb on - strand, within AO353_16760 at 3715.217 kb on - strand, within AO353_16760 at 3715.217 kb on - strand, within AO353_16760 at 3715.217 kb on - strand, within AO353_16760 at 3715.217 kb on - strand, within AO353_16760 at 3715.355 kb on - strand, within AO353_16760 at 3715.401 kb on + strand, within AO353_16760 at 3715.401 kb on + strand, within AO353_16760 at 3715.401 kb on + strand, within AO353_16760 at 3715.402 kb on - strand, within AO353_16760 at 3715.402 kb on - strand, within AO353_16760 at 3715.813 kb on + strand, within AO353_16760 at 3715.813 kb on + strand, within AO353_16760 at 3715.814 kb on - strand, within AO353_16760 at 3715.930 kb on + strand at 3715.930 kb on + strand at 3715.930 kb on + strand at 3715.930 kb on + strand at 3715.931 kb on - strand at 3715.931 kb on - strand at 3715.931 kb on - strand at 3715.931 kb on - strand at 3715.931 kb on - strand at 3715.931 kb on - strand at 3715.931 kb on - strand at 3715.956 kb on + strand at 3715.983 kb on + strand at 3715.984 kb on - strand at 3715.984 kb on - strand at 3716.037 kb on - strand at 3716.037 kb on - strand at 3716.037 kb on - strand at 3716.111 kb on + strand at 3716.111 kb on + strand at 3716.112 kb on - strand at 3716.112 kb on - strand at 3716.133 kb on + strand at 3716.134 kb on - strand at 3716.294 kb on - strand, within AO353_16765 at 3716.335 kb on - strand, within AO353_16765 at 3716.335 kb on - strand, within AO353_16765 at 3716.396 kb on + strand, within AO353_16765 at 3716.396 kb on + strand, within AO353_16765 at 3716.396 kb on + strand, within AO353_16765 at 3716.557 kb on + strand, within AO353_16765 at 3716.640 kb on + strand at 3716.641 kb on - strand at 3716.641 kb on - strand at 3716.641 kb on - strand at 3716.858 kb on - strand, within AO353_16770 at 3717.022 kb on + strand at 3717.022 kb on + strand at 3717.022 kb on + strand at 3717.022 kb on + strand at 3717.022 kb on + strand at 3717.023 kb on - strand at 3717.023 kb on - strand at 3717.023 kb on - strand at 3717.023 kb on - strand at 3717.023 kb on - strand at 3717.152 kb on + strand, within AO353_16775 at 3717.152 kb on + strand, within AO353_16775 at 3717.152 kb on + strand, within AO353_16775 at 3717.152 kb on + strand, within AO353_16775 at 3717.153 kb on - strand, within AO353_16775 at 3717.158 kb on + strand, within AO353_16775 at 3717.158 kb on + strand, within AO353_16775 at 3717.159 kb on - strand, within AO353_16775 at 3717.251 kb on - strand, within AO353_16775 at 3717.350 kb on + strand, within AO353_16775 at 3717.350 kb on + strand, within AO353_16775 at 3717.350 kb on + strand, within AO353_16775 at 3717.351 kb on - strand, within AO353_16775 at 3717.351 kb on - strand, within AO353_16775 at 3717.609 kb on - strand, within AO353_16775
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 3,715,198 + AO353_16760 0.21 -2.0 3,715,198 + AO353_16760 0.21 -0.6 3,715,198 + AO353_16760 0.21 +0.7 3,715,198 + AO353_16760 0.21 -0.8 3,715,198 + AO353_16760 0.21 -1.8 3,715,198 + AO353_16760 0.21 +0.2 3,715,198 + AO353_16760 0.21 -0.9 3,715,198 + AO353_16760 0.21 +0.6 3,715,199 - AO353_16760 0.21 -0.0 3,715,199 - AO353_16760 0.21 -1.6 3,715,199 - AO353_16760 0.21 -1.0 3,715,199 - AO353_16760 0.21 +0.5 3,715,199 - AO353_16760 0.21 -0.9 3,715,199 - AO353_16760 0.21 +0.4 3,715,199 - AO353_16760 0.21 -0.0 3,715,216 + AO353_16760 0.23 +0.5 3,715,216 + AO353_16760 0.23 +1.5 3,715,216 + AO353_16760 0.23 -0.6 3,715,216 + AO353_16760 0.23 +0.6 3,715,216 + AO353_16760 0.23 -0.2 3,715,217 - AO353_16760 0.23 +0.8 3,715,217 - AO353_16760 0.23 +0.3 3,715,217 - AO353_16760 0.23 -0.8 3,715,217 - AO353_16760 0.23 -2.3 3,715,217 - AO353_16760 0.23 -1.1 3,715,355 - AO353_16760 0.36 -0.9 3,715,401 + AO353_16760 0.41 -0.3 3,715,401 + AO353_16760 0.41 -2.5 3,715,401 + AO353_16760 0.41 -1.4 3,715,402 - AO353_16760 0.41 +0.3 3,715,402 - AO353_16760 0.41 -1.5 3,715,813 + AO353_16760 0.80 +0.6 3,715,813 + AO353_16760 0.80 -1.7 3,715,814 - AO353_16760 0.80 -0.5 3,715,930 + +0.3 3,715,930 + +0.4 3,715,930 + -0.6 3,715,930 + -1.5 3,715,931 - -1.0 3,715,931 - +0.8 3,715,931 - +0.1 3,715,931 - +0.8 3,715,931 - +0.0 3,715,931 - -0.4 3,715,931 - -2.0 3,715,956 + +1.0 3,715,983 + -0.9 3,715,984 - +1.0 3,715,984 - -0.8 3,716,037 - +0.3 3,716,037 - +0.4 3,716,037 - -0.0 3,716,111 + +1.6 3,716,111 + +2.0 3,716,112 - -0.1 3,716,112 - -2.3 3,716,133 + -1.7 3,716,134 - -0.9 3,716,294 - AO353_16765 0.33 -0.0 3,716,335 - AO353_16765 0.41 -1.0 3,716,335 - AO353_16765 0.41 -1.2 3,716,396 + AO353_16765 0.53 -1.8 3,716,396 + AO353_16765 0.53 -0.0 3,716,396 + AO353_16765 0.53 -0.0 3,716,557 + AO353_16765 0.85 +0.1 3,716,640 + -1.0 3,716,641 - -1.3 3,716,641 - +1.7 3,716,641 - +0.5 3,716,858 - AO353_16770 0.56 +1.3 3,717,022 + +1.0 3,717,022 + -0.6 3,717,022 + -0.0 3,717,022 + -0.3 3,717,022 + -1.2 3,717,023 - -2.0 3,717,023 - -0.2 3,717,023 - +0.5 3,717,023 - +2.0 3,717,023 - -1.0 3,717,152 + AO353_16775 0.12 +1.3 3,717,152 + AO353_16775 0.12 -0.6 3,717,152 + AO353_16775 0.12 -0.3 3,717,152 + AO353_16775 0.12 +0.5 3,717,153 - AO353_16775 0.12 +1.6 3,717,158 + AO353_16775 0.13 +0.3 3,717,158 + AO353_16775 0.13 -2.3 3,717,159 - AO353_16775 0.13 -0.3 3,717,251 - AO353_16775 0.22 -0.6 3,717,350 + AO353_16775 0.31 -1.6 3,717,350 + AO353_16775 0.31 +0.5 3,717,350 + AO353_16775 0.31 -0.8 3,717,351 - AO353_16775 0.32 -0.8 3,717,351 - AO353_16775 0.32 -0.6 3,717,609 - AO353_16775 0.56 +0.4
Or see this region's nucleotide sequence