Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13085

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13080 and AO353_13085 are separated by 314 nucleotidesAO353_13085 and AO353_13090 are separated by 166 nucleotides AO353_13080: AO353_13080 - thiosulfate sulfurtransferase, at 2,898,565 to 2,899,389 _13080 AO353_13085: AO353_13085 - histidine kinase, at 2,899,704 to 2,901,236 _13085 AO353_13090: AO353_13090 - flagellar motor stator protein MotA, at 2,901,403 to 2,902,254 _13090 Position (kb) 2899 2900 2901 2902Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2898.870 kb on - strand, within AO353_13080at 2898.932 kb on + strand, within AO353_13080at 2899.056 kb on - strand, within AO353_13080at 2899.056 kb on - strand, within AO353_13080at 2899.056 kb on - strand, within AO353_13080at 2899.056 kb on - strand, within AO353_13080at 2899.056 kb on - strand, within AO353_13080at 2899.056 kb on - strand, within AO353_13080at 2899.056 kb on - strand, within AO353_13080at 2899.056 kb on - strand, within AO353_13080at 2899.056 kb on - strand, within AO353_13080at 2899.061 kb on + strand, within AO353_13080at 2899.062 kb on - strand, within AO353_13080at 2899.062 kb on - strand, within AO353_13080at 2899.062 kb on - strand, within AO353_13080at 2899.062 kb on - strand, within AO353_13080at 2899.062 kb on - strand, within AO353_13080at 2899.062 kb on - strand, within AO353_13080at 2899.062 kb on - strand, within AO353_13080at 2899.062 kb on - strand, within AO353_13080at 2899.062 kb on - strand, within AO353_13080at 2899.062 kb on - strand, within AO353_13080at 2899.062 kb on - strand, within AO353_13080at 2899.062 kb on - strand, within AO353_13080at 2899.062 kb on - strand, within AO353_13080at 2899.131 kb on - strand, within AO353_13080at 2899.131 kb on - strand, within AO353_13080at 2899.131 kb on - strand, within AO353_13080at 2899.140 kb on - strand, within AO353_13080at 2899.140 kb on - strand, within AO353_13080at 2899.140 kb on - strand, within AO353_13080at 2899.140 kb on - strand, within AO353_13080at 2899.156 kb on - strand, within AO353_13080at 2899.422 kb on + strandat 2899.422 kb on + strandat 2899.422 kb on + strandat 2899.423 kb on - strandat 2899.423 kb on - strandat 2899.423 kb on - strandat 2899.423 kb on - strandat 2899.423 kb on - strandat 2899.454 kb on + strandat 2899.455 kb on - strandat 2899.455 kb on - strandat 2899.455 kb on - strandat 2899.455 kb on - strandat 2899.526 kb on + strandat 2899.526 kb on + strandat 2899.526 kb on + strandat 2899.526 kb on + strandat 2899.526 kb on + strandat 2899.526 kb on + strandat 2899.526 kb on + strandat 2899.526 kb on + strandat 2899.527 kb on - strandat 2899.527 kb on - strandat 2899.527 kb on - strandat 2899.527 kb on - strandat 2899.631 kb on + strandat 2899.631 kb on + strandat 2899.631 kb on + strandat 2899.631 kb on + strandat 2899.631 kb on + strandat 2899.632 kb on - strandat 2899.688 kb on + strandat 2899.688 kb on + strandat 2899.689 kb on - strandat 2899.715 kb on + strandat 2899.716 kb on - strandat 2900.012 kb on + strand, within AO353_13085at 2900.141 kb on + strand, within AO353_13085at 2900.141 kb on + strand, within AO353_13085at 2900.142 kb on - strand, within AO353_13085at 2900.142 kb on - strand, within AO353_13085at 2900.142 kb on - strand, within AO353_13085at 2900.142 kb on - strand, within AO353_13085at 2900.371 kb on + strand, within AO353_13085at 2900.371 kb on + strand, within AO353_13085at 2900.372 kb on - strand, within AO353_13085at 2900.372 kb on - strand, within AO353_13085at 2900.611 kb on - strand, within AO353_13085at 2900.795 kb on + strand, within AO353_13085at 2900.796 kb on - strand, within AO353_13085at 2900.796 kb on - strand, within AO353_13085at 2901.163 kb on - strandat 2901.206 kb on + strandat 2901.262 kb on + strandat 2901.263 kb on - strandat 2901.263 kb on - strandat 2901.288 kb on - strandat 2901.309 kb on - strandat 2901.310 kb on + strandat 2901.310 kb on + strandat 2901.310 kb on + strandat 2901.311 kb on - strandat 2901.336 kb on + strandat 2901.336 kb on + strandat 2901.336 kb on + strandat 2901.336 kb on + strandat 2901.336 kb on + strandat 2901.336 kb on + strandat 2901.336 kb on + strandat 2901.337 kb on - strandat 2901.337 kb on - strandat 2901.364 kb on + strandat 2901.364 kb on + strandat 2901.364 kb on + strandat 2901.365 kb on - strandat 2901.383 kb on + strandat 2901.383 kb on + strandat 2901.383 kb on + strandat 2901.383 kb on + strandat 2901.383 kb on + strandat 2901.383 kb on + strandat 2901.383 kb on + strandat 2901.383 kb on + strandat 2901.383 kb on + strandat 2901.383 kb on + strandat 2901.384 kb on - strandat 2901.384 kb on - strandat 2901.384 kb on - strandat 2901.384 kb on - strandat 2901.384 kb on - strandat 2901.384 kb on - strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.387 kb on + strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.388 kb on - strandat 2901.391 kb on + strandat 2901.391 kb on + strandat 2901.391 kb on + strandat 2901.391 kb on + strandat 2901.391 kb on + strandat 2901.391 kb on + strandat 2901.391 kb on + strandat 2901.391 kb on + strandat 2901.391 kb on + strandat 2901.391 kb on + strandat 2901.392 kb on - strandat 2901.392 kb on - strandat 2901.392 kb on - strandat 2901.392 kb on - strandat 2901.398 kb on + strandat 2901.398 kb on + strandat 2901.398 kb on + strandat 2901.398 kb on + strandat 2901.398 kb on + strandat 2901.398 kb on + strandat 2901.398 kb on + strandat 2901.398 kb on + strandat 2901.399 kb on - strandat 2901.399 kb on - strandat 2901.399 kb on - strandat 2901.399 kb on - strandat 2901.399 kb on - strandat 2901.399 kb on - strandat 2901.399 kb on - strandat 2901.399 kb on - strandat 2901.399 kb on - strandat 2901.402 kb on + strandat 2901.402 kb on + strandat 2901.402 kb on + strandat 2901.402 kb on + strandat 2901.402 kb on + strandat 2901.403 kb on - strandat 2901.403 kb on - strandat 2901.403 kb on - strandat 2901.403 kb on - strandat 2901.403 kb on - strandat 2901.403 kb on - strandat 2901.403 kb on - strandat 2901.403 kb on - strandat 2901.403 kb on - strandat 2901.403 kb on - strandat 2901.403 kb on - strandat 2901.403 kb on - strandat 2901.414 kb on + strandat 2901.431 kb on + strandat 2901.432 kb on - strandat 2901.432 kb on - strandat 2901.454 kb on + strandat 2901.454 kb on + strandat 2901.454 kb on + strandat 2901.622 kb on + strand, within AO353_13090at 2901.622 kb on + strand, within AO353_13090at 2901.622 kb on + strand, within AO353_13090at 2901.622 kb on + strand, within AO353_13090at 2901.622 kb on + strand, within AO353_13090at 2901.622 kb on + strand, within AO353_13090at 2901.623 kb on - strand, within AO353_13090at 2901.623 kb on - strand, within AO353_13090at 2901.646 kb on + strand, within AO353_13090at 2901.646 kb on + strand, within AO353_13090at 2901.647 kb on - strand, within AO353_13090at 2901.647 kb on - strand, within AO353_13090at 2901.647 kb on - strand, within AO353_13090at 2901.653 kb on + strand, within AO353_13090at 2901.653 kb on + strand, within AO353_13090at 2901.654 kb on - strand, within AO353_13090at 2901.654 kb on - strand, within AO353_13090at 2901.654 kb on - strand, within AO353_13090at 2901.654 kb on - strand, within AO353_13090at 2901.737 kb on - strand, within AO353_13090at 2901.737 kb on - strand, within AO353_13090at 2901.784 kb on + strand, within AO353_13090at 2901.784 kb on + strand, within AO353_13090at 2901.785 kb on - strand, within AO353_13090at 2901.785 kb on - strand, within AO353_13090at 2902.007 kb on + strand, within AO353_13090at 2902.007 kb on + strand, within AO353_13090at 2902.007 kb on + strand, within AO353_13090at 2902.007 kb on + strand, within AO353_13090at 2902.007 kb on + strand, within AO353_13090at 2902.007 kb on + strand, within AO353_13090at 2902.007 kb on + strand, within AO353_13090at 2902.007 kb on + strand, within AO353_13090at 2902.007 kb on + strand, within AO353_13090at 2902.007 kb on + strand, within AO353_13090at 2902.007 kb on + strand, within AO353_13090at 2902.007 kb on + strand, within AO353_13090at 2902.007 kb on + strand, within AO353_13090at 2902.008 kb on - strand, within AO353_13090at 2902.008 kb on - strand, within AO353_13090at 2902.008 kb on - strand, within AO353_13090at 2902.008 kb on - strand, within AO353_13090at 2902.008 kb on - strand, within AO353_13090at 2902.008 kb on - strand, within AO353_13090at 2902.008 kb on - strand, within AO353_13090at 2902.008 kb on - strand, within AO353_13090at 2902.008 kb on - strand, within AO353_13090at 2902.008 kb on - strand, within AO353_13090at 2902.008 kb on - strand, within AO353_13090at 2902.008 kb on - strand, within AO353_13090at 2902.008 kb on - strand, within AO353_13090at 2902.051 kb on + strand, within AO353_13090at 2902.052 kb on - strand, within AO353_13090at 2902.110 kb on + strand, within AO353_13090at 2902.110 kb on + strand, within AO353_13090at 2902.110 kb on + strand, within AO353_13090at 2902.110 kb on + strand, within AO353_13090at 2902.111 kb on - strand, within AO353_13090at 2902.111 kb on - strand, within AO353_13090at 2902.111 kb on - strand, within AO353_13090at 2902.111 kb on - strand, within AO353_13090at 2902.114 kb on + strand, within AO353_13090at 2902.114 kb on + strand, within AO353_13090at 2902.114 kb on + strand, within AO353_13090at 2902.114 kb on + strand, within AO353_13090at 2902.114 kb on + strand, within AO353_13090at 2902.114 kb on + strand, within AO353_13090at 2902.114 kb on + strand, within AO353_13090at 2902.114 kb on + strand, within AO353_13090at 2902.115 kb on - strand, within AO353_13090at 2902.115 kb on - strand, within AO353_13090at 2902.115 kb on - strand, within AO353_13090at 2902.115 kb on - strand, within AO353_13090

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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2,898,870 - AO353_13080 0.37 -0.4
2,898,932 + AO353_13080 0.44 -1.3
2,899,056 - AO353_13080 0.60 -1.3
2,899,056 - AO353_13080 0.60 -2.0
2,899,056 - AO353_13080 0.60 -0.6
2,899,056 - AO353_13080 0.60 +0.1
2,899,056 - AO353_13080 0.60 -0.7
2,899,056 - AO353_13080 0.60 -1.2
2,899,056 - AO353_13080 0.60 -0.9
2,899,056 - AO353_13080 0.60 -0.6
2,899,056 - AO353_13080 0.60 -1.7
2,899,061 + AO353_13080 0.60 -0.4
2,899,062 - AO353_13080 0.60 +0.5
2,899,062 - AO353_13080 0.60 +0.1
2,899,062 - AO353_13080 0.60 -0.5
2,899,062 - AO353_13080 0.60 -0.7
2,899,062 - AO353_13080 0.60 -0.7
2,899,062 - AO353_13080 0.60 +0.7
2,899,062 - AO353_13080 0.60 +1.7
2,899,062 - AO353_13080 0.60 +1.3
2,899,062 - AO353_13080 0.60 -0.7
2,899,062 - AO353_13080 0.60 -1.0
2,899,062 - AO353_13080 0.60 +0.5
2,899,062 - AO353_13080 0.60 +0.5
2,899,062 - AO353_13080 0.60 -0.8
2,899,131 - AO353_13080 0.69 +1.3
2,899,131 - AO353_13080 0.69 -0.2
2,899,131 - AO353_13080 0.69 +0.9
2,899,140 - AO353_13080 0.70 +1.6
2,899,140 - AO353_13080 0.70 -0.3
2,899,140 - AO353_13080 0.70 -0.6
2,899,140 - AO353_13080 0.70 +1.3
2,899,156 - AO353_13080 0.72 -1.0
2,899,422 + -0.6
2,899,422 + -2.9
2,899,422 + +0.5
2,899,423 - -0.9
2,899,423 - +0.3
2,899,423 - -0.1
2,899,423 - -0.5
2,899,423 - -0.2
2,899,454 + -1.3
2,899,455 - +1.1
2,899,455 - -2.2
2,899,455 - -0.7
2,899,455 - +0.1
2,899,526 + -0.6
2,899,526 + +1.7
2,899,526 + +0.1
2,899,526 + +1.3
2,899,526 + -1.0
2,899,526 + -0.6
2,899,526 + +0.5
2,899,526 + -0.3
2,899,527 - +0.8
2,899,527 - -1.3
2,899,527 - +0.8
2,899,527 - +1.4
2,899,631 + -1.3
2,899,631 + +1.1
2,899,631 + -1.9
2,899,631 + -0.6
2,899,631 + -0.8
2,899,632 - -0.5
2,899,688 + -1.8
2,899,688 + +1.0
2,899,689 - -0.2
2,899,715 + -1.5
2,899,716 - -1.0
2,900,012 + AO353_13085 0.20 -1.4
2,900,141 + AO353_13085 0.29 -0.7
2,900,141 + AO353_13085 0.29 -1.3
2,900,142 - AO353_13085 0.29 -1.9
2,900,142 - AO353_13085 0.29 -1.9
2,900,142 - AO353_13085 0.29 -0.2
2,900,142 - AO353_13085 0.29 -1.3
2,900,371 + AO353_13085 0.44 -1.4
2,900,371 + AO353_13085 0.44 -1.1
2,900,372 - AO353_13085 0.44 -0.2
2,900,372 - AO353_13085 0.44 -2.6
2,900,611 - AO353_13085 0.59 +1.5
2,900,795 + AO353_13085 0.71 +1.1
2,900,796 - AO353_13085 0.71 -1.1
2,900,796 - AO353_13085 0.71 +0.8
2,901,163 - -0.5
2,901,206 + +0.7
2,901,262 + +0.2
2,901,263 - -1.3
2,901,263 - +1.4
2,901,288 - +0.5
2,901,309 - -0.2
2,901,310 + +0.5
2,901,310 + +0.8
2,901,310 + -1.3
2,901,311 - -0.1
2,901,336 + +1.3
2,901,336 + -0.9
2,901,336 + +0.4
2,901,336 + +0.3
2,901,336 + -0.9
2,901,336 + +0.5
2,901,336 + -0.2
2,901,337 - +0.0
2,901,337 - +1.1
2,901,364 + -0.0
2,901,364 + +0.9
2,901,364 + +0.2
2,901,365 - +0.4
2,901,383 + +0.9
2,901,383 + +2.4
2,901,383 + -0.1
2,901,383 + +2.5
2,901,383 + -0.1
2,901,383 + -1.8
2,901,383 + +0.9
2,901,383 + -0.2
2,901,383 + -1.2
2,901,383 + -0.6
2,901,384 - -1.8
2,901,384 - -0.5
2,901,384 - +0.2
2,901,384 - +1.0
2,901,384 - +0.4
2,901,384 - -0.3
2,901,387 + -1.1
2,901,387 + -3.0
2,901,387 + -0.7
2,901,387 + +0.4
2,901,387 + +1.5
2,901,387 + +1.0
2,901,387 + +0.5
2,901,387 + -0.5
2,901,387 + +0.1
2,901,387 + +1.1
2,901,387 + -1.1
2,901,387 + +1.8
2,901,387 + -0.8
2,901,387 + -0.1
2,901,387 + -0.7
2,901,387 + -0.2
2,901,387 + -1.8
2,901,387 + +1.2
2,901,387 + -2.2
2,901,387 + +1.2
2,901,387 + -1.3
2,901,387 + -0.1
2,901,388 - +0.9
2,901,388 - -0.7
2,901,388 - +0.3
2,901,388 - -0.8
2,901,388 - +1.3
2,901,388 - +0.7
2,901,388 - +0.2
2,901,388 - -1.3
2,901,388 - -0.2
2,901,388 - +0.4
2,901,388 - +0.1
2,901,388 - +3.1
2,901,388 - -1.5
2,901,388 - -0.0
2,901,388 - +0.0
2,901,388 - +2.5
2,901,388 - -0.3
2,901,388 - +1.4
2,901,388 - -0.8
2,901,391 + -0.2
2,901,391 + -0.9
2,901,391 + +0.4
2,901,391 + -3.1
2,901,391 + +1.0
2,901,391 + +1.5
2,901,391 + +0.4
2,901,391 + +1.8
2,901,391 + -0.2
2,901,391 + -1.2
2,901,392 - +0.1
2,901,392 - -1.2
2,901,392 - +0.7
2,901,392 - -0.2
2,901,398 + -0.3
2,901,398 + -0.4
2,901,398 + +0.3
2,901,398 + +0.7
2,901,398 + +0.3
2,901,398 + -2.1
2,901,398 + -0.7
2,901,398 + -1.3
2,901,399 - +0.2
2,901,399 - +0.8
2,901,399 - -0.3
2,901,399 - +0.1
2,901,399 - +1.8
2,901,399 - -0.1
2,901,399 - -1.5
2,901,399 - -1.1
2,901,399 - -0.8
2,901,402 + -0.1
2,901,402 + -1.1
2,901,402 + -0.3
2,901,402 + -0.2
2,901,402 + +0.9
2,901,403 - +1.0
2,901,403 - +2.1
2,901,403 - -1.6
2,901,403 - +1.1
2,901,403 - -0.1
2,901,403 - -1.8
2,901,403 - -0.1
2,901,403 - -1.2
2,901,403 - -0.3
2,901,403 - +0.9
2,901,403 - +1.7
2,901,403 - +0.4
2,901,414 + +0.9
2,901,431 + -0.6
2,901,432 - +0.1
2,901,432 - +1.0
2,901,454 + -0.3
2,901,454 + -0.0
2,901,454 + -2.7
2,901,622 + AO353_13090 0.26 -0.9
2,901,622 + AO353_13090 0.26 -0.2
2,901,622 + AO353_13090 0.26 +0.6
2,901,622 + AO353_13090 0.26 -0.6
2,901,622 + AO353_13090 0.26 +0.0
2,901,622 + AO353_13090 0.26 -0.9
2,901,623 - AO353_13090 0.26 -0.7
2,901,623 - AO353_13090 0.26 +0.4
2,901,646 + AO353_13090 0.29 +0.7
2,901,646 + AO353_13090 0.29 +1.5
2,901,647 - AO353_13090 0.29 -1.6
2,901,647 - AO353_13090 0.29 -1.5
2,901,647 - AO353_13090 0.29 +0.4
2,901,653 + AO353_13090 0.29 +0.6
2,901,653 + AO353_13090 0.29 -0.3
2,901,654 - AO353_13090 0.29 -0.9
2,901,654 - AO353_13090 0.29 +0.2
2,901,654 - AO353_13090 0.29 +0.4
2,901,654 - AO353_13090 0.29 -1.6
2,901,737 - AO353_13090 0.39 -0.3
2,901,737 - AO353_13090 0.39 -0.9
2,901,784 + AO353_13090 0.45 -1.3
2,901,784 + AO353_13090 0.45 +0.0
2,901,785 - AO353_13090 0.45 +0.1
2,901,785 - AO353_13090 0.45 -0.1
2,902,007 + AO353_13090 0.71 +1.6
2,902,007 + AO353_13090 0.71 +2.2
2,902,007 + AO353_13090 0.71 -0.2
2,902,007 + AO353_13090 0.71 -0.2
2,902,007 + AO353_13090 0.71 -1.7
2,902,007 + AO353_13090 0.71 -1.2
2,902,007 + AO353_13090 0.71 -1.2
2,902,007 + AO353_13090 0.71 -1.3
2,902,007 + AO353_13090 0.71 +0.7
2,902,007 + AO353_13090 0.71 +3.6
2,902,007 + AO353_13090 0.71 -0.6
2,902,007 + AO353_13090 0.71 +0.5
2,902,007 + AO353_13090 0.71 -1.1
2,902,008 - AO353_13090 0.71 -0.3
2,902,008 - AO353_13090 0.71 -0.6
2,902,008 - AO353_13090 0.71 +1.2
2,902,008 - AO353_13090 0.71 +0.1
2,902,008 - AO353_13090 0.71 +0.5
2,902,008 - AO353_13090 0.71 -0.7
2,902,008 - AO353_13090 0.71 -0.6
2,902,008 - AO353_13090 0.71 +0.4
2,902,008 - AO353_13090 0.71 +1.4
2,902,008 - AO353_13090 0.71 -1.6
2,902,008 - AO353_13090 0.71 -0.3
2,902,008 - AO353_13090 0.71 +0.4
2,902,008 - AO353_13090 0.71 -0.9
2,902,051 + AO353_13090 0.76 -1.7
2,902,052 - AO353_13090 0.76 -0.8
2,902,110 + AO353_13090 0.83 -1.1
2,902,110 + AO353_13090 0.83 +0.5
2,902,110 + AO353_13090 0.83 +0.1
2,902,110 + AO353_13090 0.83 -0.9
2,902,111 - AO353_13090 0.83 -0.4
2,902,111 - AO353_13090 0.83 +0.9
2,902,111 - AO353_13090 0.83 -1.8
2,902,111 - AO353_13090 0.83 +0.4
2,902,114 + AO353_13090 0.83 -0.5
2,902,114 + AO353_13090 0.83 -1.2
2,902,114 + AO353_13090 0.83 -0.3
2,902,114 + AO353_13090 0.83 -1.2
2,902,114 + AO353_13090 0.83 +0.6
2,902,114 + AO353_13090 0.83 +1.2
2,902,114 + AO353_13090 0.83 -0.1
2,902,114 + AO353_13090 0.83 +0.0
2,902,115 - AO353_13090 0.84 +1.1
2,902,115 - AO353_13090 0.84 +0.2
2,902,115 - AO353_13090 0.84 -0.7
2,902,115 - AO353_13090 0.84 -2.5

Or see this region's nucleotide sequence