Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09325 and AO353_09330 are separated by 246 nucleotides AO353_09330 and AO353_09335 are separated by 254 nucleotides
AO353_09325: AO353_09325 - histidine kinase, at 2,044,398 to 2,045,798
_09325
AO353_09330: AO353_09330 - helicase, at 2,046,045 to 2,046,428
_09330
AO353_09335: AO353_09335 - transposase, at 2,046,683 to 2,048,113
_09335
Position (kb)
2046
2047 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2045.115 kb on + strand, within AO353_09325 at 2045.115 kb on + strand, within AO353_09325 at 2045.115 kb on + strand, within AO353_09325 at 2045.116 kb on - strand, within AO353_09325 at 2045.118 kb on + strand, within AO353_09325 at 2045.118 kb on + strand, within AO353_09325 at 2045.119 kb on - strand, within AO353_09325 at 2045.119 kb on - strand, within AO353_09325 at 2045.119 kb on - strand, within AO353_09325 at 2045.280 kb on + strand, within AO353_09325 at 2045.280 kb on + strand, within AO353_09325 at 2045.280 kb on + strand, within AO353_09325 at 2045.280 kb on + strand, within AO353_09325 at 2045.281 kb on - strand, within AO353_09325 at 2045.352 kb on + strand, within AO353_09325 at 2045.352 kb on + strand, within AO353_09325 at 2045.353 kb on - strand, within AO353_09325 at 2045.353 kb on - strand, within AO353_09325 at 2045.353 kb on - strand, within AO353_09325 at 2045.353 kb on - strand, within AO353_09325 at 2045.382 kb on + strand, within AO353_09325 at 2045.383 kb on - strand, within AO353_09325 at 2045.383 kb on - strand, within AO353_09325 at 2045.548 kb on + strand, within AO353_09325 at 2045.548 kb on + strand, within AO353_09325 at 2045.549 kb on - strand, within AO353_09325 at 2045.549 kb on - strand, within AO353_09325 at 2045.583 kb on + strand, within AO353_09325 at 2045.583 kb on + strand, within AO353_09325 at 2045.583 kb on + strand, within AO353_09325 at 2045.583 kb on + strand, within AO353_09325 at 2045.584 kb on - strand, within AO353_09325 at 2045.595 kb on + strand, within AO353_09325 at 2045.847 kb on + strand at 2045.847 kb on + strand at 2045.847 kb on + strand at 2045.847 kb on + strand at 2045.847 kb on + strand at 2045.847 kb on + strand at 2045.847 kb on + strand at 2045.847 kb on + strand at 2045.847 kb on + strand at 2045.848 kb on - strand at 2045.848 kb on - strand at 2045.848 kb on - strand at 2045.848 kb on - strand at 2045.848 kb on - strand at 2045.848 kb on - strand at 2045.848 kb on - strand at 2045.878 kb on + strand at 2045.878 kb on + strand at 2045.878 kb on + strand at 2045.879 kb on - strand at 2045.879 kb on - strand at 2045.879 kb on - strand at 2045.879 kb on - strand at 2045.879 kb on - strand at 2045.954 kb on + strand at 2045.954 kb on + strand at 2045.954 kb on + strand at 2045.955 kb on - strand at 2045.955 kb on - strand at 2045.955 kb on - strand at 2045.955 kb on - strand at 2045.955 kb on - strand at 2046.036 kb on + strand at 2046.053 kb on + strand at 2046.053 kb on + strand at 2046.054 kb on - strand at 2046.079 kb on + strand at 2046.079 kb on + strand at 2046.079 kb on + strand at 2046.079 kb on + strand at 2046.079 kb on + strand at 2046.079 kb on + strand at 2046.080 kb on - strand at 2046.080 kb on - strand at 2046.080 kb on - strand at 2046.080 kb on - strand at 2046.080 kb on - strand at 2046.080 kb on - strand at 2046.080 kb on - strand at 2046.203 kb on - strand, within AO353_09330 at 2046.244 kb on + strand, within AO353_09330 at 2046.244 kb on + strand, within AO353_09330 at 2046.244 kb on + strand, within AO353_09330 at 2046.244 kb on + strand, within AO353_09330 at 2046.244 kb on + strand, within AO353_09330 at 2046.245 kb on - strand, within AO353_09330 at 2046.245 kb on - strand, within AO353_09330 at 2046.245 kb on - strand, within AO353_09330 at 2046.245 kb on - strand, within AO353_09330 at 2046.245 kb on - strand, within AO353_09330 at 2046.245 kb on - strand, within AO353_09330 at 2046.245 kb on - strand, within AO353_09330 at 2046.245 kb on - strand, within AO353_09330 at 2046.245 kb on - strand, within AO353_09330 at 2046.245 kb on - strand, within AO353_09330 at 2046.258 kb on - strand, within AO353_09330 at 2046.339 kb on - strand, within AO353_09330 at 2046.468 kb on - strand at 2046.505 kb on + strand at 2046.528 kb on - strand at 2046.580 kb on + strand at 2046.580 kb on + strand at 2046.580 kb on + strand at 2046.580 kb on + strand at 2046.580 kb on + strand at 2046.580 kb on + strand at 2046.580 kb on + strand at 2046.580 kb on + strand at 2046.581 kb on - strand at 2046.581 kb on - strand at 2046.581 kb on - strand at 2046.581 kb on - strand at 2046.581 kb on - strand at 2046.581 kb on - strand at 2046.581 kb on - strand at 2046.581 kb on - strand at 2046.624 kb on - strand at 2046.624 kb on - strand at 2046.624 kb on - strand at 2046.624 kb on - strand at 2046.624 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 2,045,115 + AO353_09325 0.51 -1.5 2,045,115 + AO353_09325 0.51 -0.4 2,045,115 + AO353_09325 0.51 +1.2 2,045,116 - AO353_09325 0.51 +0.4 2,045,118 + AO353_09325 0.51 +3.4 2,045,118 + AO353_09325 0.51 +1.4 2,045,119 - AO353_09325 0.51 +0.8 2,045,119 - AO353_09325 0.51 -0.9 2,045,119 - AO353_09325 0.51 -0.3 2,045,280 + AO353_09325 0.63 +1.0 2,045,280 + AO353_09325 0.63 -1.3 2,045,280 + AO353_09325 0.63 -0.4 2,045,280 + AO353_09325 0.63 +0.2 2,045,281 - AO353_09325 0.63 +1.7 2,045,352 + AO353_09325 0.68 -0.9 2,045,352 + AO353_09325 0.68 -2.5 2,045,353 - AO353_09325 0.68 +1.5 2,045,353 - AO353_09325 0.68 -1.7 2,045,353 - AO353_09325 0.68 -1.5 2,045,353 - AO353_09325 0.68 -2.6 2,045,382 + AO353_09325 0.70 -0.6 2,045,383 - AO353_09325 0.70 -0.4 2,045,383 - AO353_09325 0.70 -0.4 2,045,548 + AO353_09325 0.82 +0.5 2,045,548 + AO353_09325 0.82 -0.2 2,045,549 - AO353_09325 0.82 +0.8 2,045,549 - AO353_09325 0.82 +0.4 2,045,583 + AO353_09325 0.85 +0.5 2,045,583 + AO353_09325 0.85 +0.1 2,045,583 + AO353_09325 0.85 -0.4 2,045,583 + AO353_09325 0.85 -0.8 2,045,584 - AO353_09325 0.85 +0.7 2,045,595 + AO353_09325 0.85 -0.6 2,045,847 + -1.8 2,045,847 + -1.5 2,045,847 + +0.1 2,045,847 + +0.2 2,045,847 + +1.0 2,045,847 + -1.3 2,045,847 + +0.6 2,045,847 + -0.4 2,045,847 + +0.8 2,045,848 - -1.4 2,045,848 - +0.7 2,045,848 - +1.4 2,045,848 - -0.8 2,045,848 - +0.9 2,045,848 - -0.2 2,045,848 - -1.3 2,045,878 + +2.3 2,045,878 + +1.4 2,045,878 + -0.9 2,045,879 - -0.4 2,045,879 - -2.3 2,045,879 - +2.2 2,045,879 - -1.1 2,045,879 - -0.6 2,045,954 + +1.2 2,045,954 + -0.5 2,045,954 + +0.5 2,045,955 - -1.3 2,045,955 - +2.7 2,045,955 - +0.1 2,045,955 - -0.7 2,045,955 - -1.2 2,046,036 + -0.0 2,046,053 + +0.6 2,046,053 + -0.3 2,046,054 - +0.2 2,046,079 + +1.2 2,046,079 + -1.7 2,046,079 + -0.1 2,046,079 + +0.8 2,046,079 + +0.9 2,046,079 + +0.1 2,046,080 - -0.6 2,046,080 - +2.0 2,046,080 - +3.9 2,046,080 - +1.5 2,046,080 - +0.4 2,046,080 - -0.9 2,046,080 - +0.4 2,046,203 - AO353_09330 0.41 -0.3 2,046,244 + AO353_09330 0.52 +0.5 2,046,244 + AO353_09330 0.52 -0.8 2,046,244 + AO353_09330 0.52 +0.7 2,046,244 + AO353_09330 0.52 +0.4 2,046,244 + AO353_09330 0.52 -1.1 2,046,245 - AO353_09330 0.52 +1.2 2,046,245 - AO353_09330 0.52 -0.1 2,046,245 - AO353_09330 0.52 +1.4 2,046,245 - AO353_09330 0.52 +2.1 2,046,245 - AO353_09330 0.52 +1.1 2,046,245 - AO353_09330 0.52 -1.1 2,046,245 - AO353_09330 0.52 +0.4 2,046,245 - AO353_09330 0.52 -0.9 2,046,245 - AO353_09330 0.52 -2.2 2,046,245 - AO353_09330 0.52 -0.4 2,046,258 - AO353_09330 0.55 +0.5 2,046,339 - AO353_09330 0.77 +1.4 2,046,468 - +0.8 2,046,505 + +0.4 2,046,528 - -1.6 2,046,580 + -1.1 2,046,580 + +0.2 2,046,580 + -0.8 2,046,580 + -2.0 2,046,580 + -1.5 2,046,580 + +1.3 2,046,580 + +0.8 2,046,580 + +0.2 2,046,581 - -1.6 2,046,581 - -0.7 2,046,581 - +0.1 2,046,581 - -0.1 2,046,581 - -1.4 2,046,581 - +0.1 2,046,581 - -1.5 2,046,581 - -0.3 2,046,624 - -2.2 2,046,624 - -0.3 2,046,624 - -0.5 2,046,624 - +0.6 2,046,624 - -1.9
Or see this region's nucleotide sequence