Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08350

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08345 and AO353_08350 are separated by 102 nucleotidesAO353_08350 and AO353_08355 are separated by 1 nucleotides AO353_08345: AO353_08345 - dihydroxy-acid dehydratase, at 1,833,356 to 1,835,197 _08345 AO353_08350: AO353_08350 - hypothetical protein, at 1,835,300 to 1,836,526 _08350 AO353_08355: AO353_08355 - GDSL family lipase, at 1,836,528 to 1,837,628 _08355 Position (kb) 1835 1836 1837Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1834.310 kb on + strand, within AO353_08345at 1834.310 kb on + strand, within AO353_08345at 1834.310 kb on + strand, within AO353_08345at 1834.310 kb on + strand, within AO353_08345at 1834.311 kb on - strand, within AO353_08345at 1834.311 kb on - strand, within AO353_08345at 1834.311 kb on - strand, within AO353_08345at 1834.311 kb on - strand, within AO353_08345at 1834.429 kb on + strand, within AO353_08345at 1834.429 kb on + strand, within AO353_08345at 1834.429 kb on + strand, within AO353_08345at 1834.429 kb on + strand, within AO353_08345at 1834.595 kb on + strand, within AO353_08345at 1834.595 kb on + strand, within AO353_08345at 1834.596 kb on - strand, within AO353_08345at 1834.596 kb on - strand, within AO353_08345at 1834.829 kb on + strand, within AO353_08345at 1834.841 kb on + strand, within AO353_08345at 1834.841 kb on + strand, within AO353_08345at 1834.842 kb on - strand, within AO353_08345at 1834.989 kb on + strand, within AO353_08345at 1834.989 kb on + strand, within AO353_08345at 1834.989 kb on + strand, within AO353_08345at 1834.989 kb on + strand, within AO353_08345at 1834.990 kb on - strand, within AO353_08345at 1834.990 kb on - strand, within AO353_08345at 1835.104 kb on + strandat 1835.104 kb on + strandat 1835.104 kb on + strandat 1835.104 kb on + strandat 1835.104 kb on + strandat 1835.104 kb on + strandat 1835.104 kb on + strandat 1835.104 kb on + strandat 1835.105 kb on - strandat 1835.105 kb on - strandat 1835.105 kb on - strandat 1835.105 kb on - strandat 1835.105 kb on - strandat 1835.105 kb on - strandat 1835.105 kb on - strandat 1835.129 kb on + strandat 1835.129 kb on + strandat 1835.130 kb on - strandat 1835.130 kb on - strandat 1835.166 kb on + strandat 1835.166 kb on + strandat 1835.166 kb on + strandat 1835.166 kb on + strandat 1835.166 kb on + strandat 1835.166 kb on + strandat 1835.166 kb on + strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.170 kb on + strandat 1835.170 kb on + strandat 1835.170 kb on + strandat 1835.170 kb on + strandat 1835.170 kb on + strandat 1835.171 kb on - strandat 1835.171 kb on - strandat 1835.171 kb on - strandat 1835.171 kb on - strandat 1835.195 kb on + strandat 1835.195 kb on + strandat 1835.195 kb on + strandat 1835.195 kb on + strandat 1835.196 kb on - strandat 1835.275 kb on + strandat 1835.276 kb on - strandat 1835.276 kb on - strandat 1835.276 kb on - strandat 1835.340 kb on + strandat 1835.341 kb on - strandat 1835.429 kb on - strand, within AO353_08350at 1835.429 kb on - strand, within AO353_08350at 1835.510 kb on - strand, within AO353_08350at 1835.510 kb on - strand, within AO353_08350at 1835.617 kb on + strand, within AO353_08350at 1835.618 kb on - strand, within AO353_08350at 1835.655 kb on + strand, within AO353_08350at 1835.655 kb on + strand, within AO353_08350at 1835.655 kb on + strand, within AO353_08350at 1835.655 kb on + strand, within AO353_08350at 1835.656 kb on - strand, within AO353_08350at 1835.656 kb on - strand, within AO353_08350at 1835.808 kb on + strand, within AO353_08350at 1835.808 kb on + strand, within AO353_08350at 1835.808 kb on + strand, within AO353_08350at 1835.808 kb on + strand, within AO353_08350at 1835.808 kb on + strand, within AO353_08350at 1835.809 kb on - strand, within AO353_08350at 1835.809 kb on - strand, within AO353_08350at 1835.809 kb on - strand, within AO353_08350at 1835.839 kb on + strand, within AO353_08350at 1836.012 kb on + strand, within AO353_08350at 1836.031 kb on - strand, within AO353_08350at 1836.099 kb on + strandat 1836.099 kb on + strand, within AO353_08350at 1836.099 kb on + strand, within AO353_08350at 1836.099 kb on + strand, within AO353_08350at 1836.099 kb on + strand, within AO353_08350at 1836.100 kb on - strand, within AO353_08350at 1836.100 kb on - strand, within AO353_08350at 1836.100 kb on - strand, within AO353_08350at 1836.121 kb on + strand, within AO353_08350at 1836.121 kb on + strand, within AO353_08350at 1836.121 kb on + strand, within AO353_08350at 1836.121 kb on + strand, within AO353_08350at 1836.122 kb on - strand, within AO353_08350at 1836.122 kb on - strand, within AO353_08350at 1836.122 kb on - strand, within AO353_08350at 1836.122 kb on - strand, within AO353_08350at 1836.122 kb on - strand, within AO353_08350at 1836.133 kb on + strand, within AO353_08350at 1836.134 kb on - strand, within AO353_08350at 1836.189 kb on + strand, within AO353_08350at 1836.189 kb on + strand, within AO353_08350at 1836.228 kb on - strand, within AO353_08350at 1836.414 kb on + strandat 1836.414 kb on + strandat 1836.415 kb on - strandat 1836.415 kb on - strandat 1836.487 kb on + strandat 1836.487 kb on + strandat 1836.487 kb on + strandat 1836.487 kb on + strandat 1836.487 kb on + strandat 1836.487 kb on + strandat 1836.487 kb on + strandat 1836.487 kb on + strandat 1836.488 kb on - strandat 1836.488 kb on - strandat 1836.488 kb on - strandat 1836.488 kb on - strandat 1836.488 kb on - strandat 1836.488 kb on - strandat 1836.488 kb on - strandat 1836.488 kb on - strandat 1836.526 kb on + strandat 1836.526 kb on + strandat 1836.526 kb on + strandat 1836.526 kb on + strandat 1836.526 kb on + strandat 1836.527 kb on - strandat 1836.527 kb on - strandat 1836.527 kb on - strandat 1836.667 kb on + strand, within AO353_08355at 1836.667 kb on + strand, within AO353_08355at 1836.667 kb on + strand, within AO353_08355at 1836.668 kb on - strand, within AO353_08355at 1836.668 kb on - strand, within AO353_08355at 1836.668 kb on - strand, within AO353_08355at 1836.668 kb on - strand, within AO353_08355at 1836.668 kb on - strand, within AO353_08355at 1836.668 kb on - strand, within AO353_08355at 1836.670 kb on + strand, within AO353_08355at 1836.670 kb on + strand, within AO353_08355at 1836.670 kb on + strand, within AO353_08355at 1836.670 kb on + strand, within AO353_08355at 1836.671 kb on - strand, within AO353_08355at 1836.671 kb on - strand, within AO353_08355at 1836.671 kb on - strand, within AO353_08355at 1836.671 kb on - strand, within AO353_08355at 1836.671 kb on - strand, within AO353_08355at 1836.671 kb on - strand, within AO353_08355at 1836.691 kb on + strand, within AO353_08355at 1836.730 kb on + strand, within AO353_08355at 1836.751 kb on + strand, within AO353_08355at 1836.751 kb on + strand, within AO353_08355at 1836.751 kb on + strand, within AO353_08355at 1836.752 kb on - strand, within AO353_08355at 1836.752 kb on - strand, within AO353_08355at 1836.752 kb on - strand, within AO353_08355at 1836.766 kb on + strand, within AO353_08355at 1836.766 kb on + strand, within AO353_08355at 1836.767 kb on - strand, within AO353_08355at 1836.828 kb on + strand, within AO353_08355at 1836.828 kb on + strand, within AO353_08355at 1836.828 kb on + strand, within AO353_08355at 1836.829 kb on - strand, within AO353_08355at 1836.829 kb on - strand, within AO353_08355at 1836.829 kb on - strand, within AO353_08355at 1836.878 kb on - strand, within AO353_08355at 1836.878 kb on - strand, within AO353_08355at 1836.878 kb on - strand, within AO353_08355at 1837.042 kb on + strand, within AO353_08355at 1837.042 kb on + strand, within AO353_08355at 1837.090 kb on + strand, within AO353_08355at 1837.090 kb on + strand, within AO353_08355at 1837.267 kb on - strand, within AO353_08355at 1837.335 kb on + strand, within AO353_08355at 1837.335 kb on + strand, within AO353_08355at 1837.335 kb on + strand, within AO353_08355at 1837.335 kb on + strand, within AO353_08355at 1837.335 kb on + strand, within AO353_08355at 1837.335 kb on + strand, within AO353_08355at 1837.336 kb on - strand, within AO353_08355at 1837.336 kb on - strand, within AO353_08355at 1837.336 kb on - strand, within AO353_08355at 1837.336 kb on - strand, within AO353_08355at 1837.336 kb on - strand, within AO353_08355at 1837.336 kb on - strand, within AO353_08355at 1837.492 kb on + strand, within AO353_08355at 1837.492 kb on + strand, within AO353_08355at 1837.493 kb on - strand, within AO353_08355at 1837.493 kb on - strand, within AO353_08355at 1837.493 kb on - strand, within AO353_08355at 1837.493 kb on - strand, within AO353_08355at 1837.493 kb on - strand, within AO353_08355at 1837.507 kb on + strand, within AO353_08355at 1837.508 kb on - strand, within AO353_08355at 1837.508 kb on - strand, within AO353_08355

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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1,834,310 + AO353_08345 0.52 +0.7
1,834,310 + AO353_08345 0.52 +0.7
1,834,310 + AO353_08345 0.52 +1.2
1,834,310 + AO353_08345 0.52 +1.0
1,834,311 - AO353_08345 0.52 -0.7
1,834,311 - AO353_08345 0.52 -0.1
1,834,311 - AO353_08345 0.52 +1.6
1,834,311 - AO353_08345 0.52 +0.2
1,834,429 + AO353_08345 0.58 -1.0
1,834,429 + AO353_08345 0.58 -0.3
1,834,429 + AO353_08345 0.58 +0.8
1,834,429 + AO353_08345 0.58 -1.0
1,834,595 + AO353_08345 0.67 -0.3
1,834,595 + AO353_08345 0.67 -1.6
1,834,596 - AO353_08345 0.67 +0.2
1,834,596 - AO353_08345 0.67 +1.6
1,834,829 + AO353_08345 0.80 +1.1
1,834,841 + AO353_08345 0.81 +0.1
1,834,841 + AO353_08345 0.81 -0.3
1,834,842 - AO353_08345 0.81 +0.7
1,834,989 + AO353_08345 0.89 +0.4
1,834,989 + AO353_08345 0.89 -1.3
1,834,989 + AO353_08345 0.89 +0.4
1,834,989 + AO353_08345 0.89 +1.3
1,834,990 - AO353_08345 0.89 -0.5
1,834,990 - AO353_08345 0.89 -0.6
1,835,104 + -0.3
1,835,104 + -0.0
1,835,104 + -0.4
1,835,104 + -1.5
1,835,104 + +1.4
1,835,104 + -0.5
1,835,104 + +1.0
1,835,104 + -1.5
1,835,105 - -0.3
1,835,105 - -0.2
1,835,105 - -0.0
1,835,105 - +0.1
1,835,105 - +1.3
1,835,105 - -1.0
1,835,105 - +1.0
1,835,129 + +1.3
1,835,129 + -2.3
1,835,130 - +0.9
1,835,130 - +1.4
1,835,166 + +0.1
1,835,166 + +0.1
1,835,166 + +1.6
1,835,166 + -0.8
1,835,166 + +0.9
1,835,166 + -0.3
1,835,166 + +0.5
1,835,167 - +0.2
1,835,167 - +0.4
1,835,167 - +0.1
1,835,167 - +0.7
1,835,167 - +0.8
1,835,167 - +0.1
1,835,167 - +1.1
1,835,167 - -0.0
1,835,167 - -0.1
1,835,167 - +1.1
1,835,170 + -0.2
1,835,170 + +0.4
1,835,170 + +3.1
1,835,170 + +0.2
1,835,170 + -1.7
1,835,171 - +1.2
1,835,171 - +0.3
1,835,171 - -0.0
1,835,171 - +1.6
1,835,195 + +1.3
1,835,195 + +0.8
1,835,195 + -1.0
1,835,195 + +0.8
1,835,196 - -0.3
1,835,275 + +1.5
1,835,276 - +0.4
1,835,276 - -0.0
1,835,276 - +0.3
1,835,340 + -1.7
1,835,341 - -1.3
1,835,429 - AO353_08350 0.11 -1.6
1,835,429 - AO353_08350 0.11 -2.2
1,835,510 - AO353_08350 0.17 -1.6
1,835,510 - AO353_08350 0.17 -1.3
1,835,617 + AO353_08350 0.26 +0.3
1,835,618 - AO353_08350 0.26 -0.3
1,835,655 + AO353_08350 0.29 -0.0
1,835,655 + AO353_08350 0.29 -1.0
1,835,655 + AO353_08350 0.29 -3.1
1,835,655 + AO353_08350 0.29 +1.3
1,835,656 - AO353_08350 0.29 -0.8
1,835,656 - AO353_08350 0.29 -1.7
1,835,808 + AO353_08350 0.41 -0.3
1,835,808 + AO353_08350 0.41 -1.8
1,835,808 + AO353_08350 0.41 +0.3
1,835,808 + AO353_08350 0.41 -2.1
1,835,808 + AO353_08350 0.41 -3.0
1,835,809 - AO353_08350 0.41 -1.2
1,835,809 - AO353_08350 0.41 -1.4
1,835,809 - AO353_08350 0.41 -0.9
1,835,839 + AO353_08350 0.44 -2.9
1,836,012 + AO353_08350 0.58 -1.9
1,836,031 - AO353_08350 0.60 -1.2
1,836,099 + +0.7
1,836,099 + AO353_08350 0.65 -0.5
1,836,099 + AO353_08350 0.65 -0.3
1,836,099 + AO353_08350 0.65 -1.0
1,836,099 + AO353_08350 0.65 -2.1
1,836,100 - AO353_08350 0.65 -1.5
1,836,100 - AO353_08350 0.65 -0.0
1,836,100 - AO353_08350 0.65 -3.1
1,836,121 + AO353_08350 0.67 -0.3
1,836,121 + AO353_08350 0.67 -1.4
1,836,121 + AO353_08350 0.67 -0.6
1,836,121 + AO353_08350 0.67 -0.7
1,836,122 - AO353_08350 0.67 -0.0
1,836,122 - AO353_08350 0.67 -0.9
1,836,122 - AO353_08350 0.67 -1.9
1,836,122 - AO353_08350 0.67 -2.9
1,836,122 - AO353_08350 0.67 +0.5
1,836,133 + AO353_08350 0.68 -0.9
1,836,134 - AO353_08350 0.68 -1.4
1,836,189 + AO353_08350 0.72 -1.5
1,836,189 + AO353_08350 0.72 -1.0
1,836,228 - AO353_08350 0.76 -0.9
1,836,414 + -1.2
1,836,414 + -1.3
1,836,415 - -1.5
1,836,415 - -1.0
1,836,487 + -1.2
1,836,487 + -0.5
1,836,487 + -0.3
1,836,487 + -0.0
1,836,487 + -1.6
1,836,487 + -0.0
1,836,487 + -1.8
1,836,487 + -3.3
1,836,488 - -2.9
1,836,488 - -2.2
1,836,488 - -3.0
1,836,488 - -1.5
1,836,488 - -2.6
1,836,488 - -2.3
1,836,488 - -0.6
1,836,488 - -1.3
1,836,526 + -3.1
1,836,526 + -0.0
1,836,526 + -0.4
1,836,526 + -1.7
1,836,526 + -0.5
1,836,527 - +1.3
1,836,527 - +1.9
1,836,527 - +0.1
1,836,667 + AO353_08355 0.13 -2.2
1,836,667 + AO353_08355 0.13 +1.1
1,836,667 + AO353_08355 0.13 -0.6
1,836,668 - AO353_08355 0.13 -0.2
1,836,668 - AO353_08355 0.13 +3.3
1,836,668 - AO353_08355 0.13 -0.9
1,836,668 - AO353_08355 0.13 +1.3
1,836,668 - AO353_08355 0.13 +0.3
1,836,668 - AO353_08355 0.13 +0.5
1,836,670 + AO353_08355 0.13 -0.3
1,836,670 + AO353_08355 0.13 -0.2
1,836,670 + AO353_08355 0.13 -0.4
1,836,670 + AO353_08355 0.13 +0.1
1,836,671 - AO353_08355 0.13 +0.5
1,836,671 - AO353_08355 0.13 +0.6
1,836,671 - AO353_08355 0.13 +0.8
1,836,671 - AO353_08355 0.13 -1.6
1,836,671 - AO353_08355 0.13 -2.3
1,836,671 - AO353_08355 0.13 +1.7
1,836,691 + AO353_08355 0.15 -1.7
1,836,730 + AO353_08355 0.18 +1.4
1,836,751 + AO353_08355 0.20 -0.1
1,836,751 + AO353_08355 0.20 +0.4
1,836,751 + AO353_08355 0.20 +0.3
1,836,752 - AO353_08355 0.20 -2.5
1,836,752 - AO353_08355 0.20 -0.7
1,836,752 - AO353_08355 0.20 -0.9
1,836,766 + AO353_08355 0.22 +1.0
1,836,766 + AO353_08355 0.22 +0.3
1,836,767 - AO353_08355 0.22 +0.2
1,836,828 + AO353_08355 0.27 -0.9
1,836,828 + AO353_08355 0.27 +0.2
1,836,828 + AO353_08355 0.27 -0.0
1,836,829 - AO353_08355 0.27 -0.3
1,836,829 - AO353_08355 0.27 +1.8
1,836,829 - AO353_08355 0.27 +0.8
1,836,878 - AO353_08355 0.32 +0.6
1,836,878 - AO353_08355 0.32 +1.6
1,836,878 - AO353_08355 0.32 +0.8
1,837,042 + AO353_08355 0.47 -0.6
1,837,042 + AO353_08355 0.47 +1.0
1,837,090 + AO353_08355 0.51 -0.2
1,837,090 + AO353_08355 0.51 -0.7
1,837,267 - AO353_08355 0.67 -0.3
1,837,335 + AO353_08355 0.73 +0.0
1,837,335 + AO353_08355 0.73 +1.3
1,837,335 + AO353_08355 0.73 -0.8
1,837,335 + AO353_08355 0.73 +1.3
1,837,335 + AO353_08355 0.73 +0.2
1,837,335 + AO353_08355 0.73 -2.0
1,837,336 - AO353_08355 0.73 -0.7
1,837,336 - AO353_08355 0.73 +0.9
1,837,336 - AO353_08355 0.73 +0.6
1,837,336 - AO353_08355 0.73 -1.2
1,837,336 - AO353_08355 0.73 +1.8
1,837,336 - AO353_08355 0.73 +1.1
1,837,492 + AO353_08355 0.88 +2.9
1,837,492 + AO353_08355 0.88 +0.3
1,837,493 - AO353_08355 0.88 -1.9
1,837,493 - AO353_08355 0.88 +0.4
1,837,493 - AO353_08355 0.88 +0.8
1,837,493 - AO353_08355 0.88 +0.9
1,837,493 - AO353_08355 0.88 -0.1
1,837,507 + AO353_08355 0.89 -0.0
1,837,508 - AO353_08355 0.89 +1.2
1,837,508 - AO353_08355 0.89 +2.3

Or see this region's nucleotide sequence