Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07505 and AO353_07510 overlap by 4 nucleotides AO353_07510 and AO353_07515 overlap by 8 nucleotides AO353_07515 and AO353_07520 overlap by 8 nucleotides
AO353_07505: AO353_07505 - dethiobiotin synthetase, at 1,652,707 to 1,653,387
_07505
AO353_07510: AO353_07510 - malonyl-[acyl-carrier protein] O-methyltransferase BioC, at 1,653,384 to 1,654,196
_07510
AO353_07515: AO353_07515 - transporter, at 1,654,189 to 1,654,920
_07515
AO353_07520: AO353_07520 - 8-amino-7-oxononanoate synthase, at 1,654,913 to 1,656,091
_07520
Position (kb)
1654
1655 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1653.232 kb on - strand, within AO353_07505 at 1653.288 kb on + strand, within AO353_07505 at 1653.316 kb on + strand, within AO353_07505 at 1653.316 kb on + strand, within AO353_07505 at 1653.317 kb on - strand, within AO353_07505 at 1653.317 kb on - strand, within AO353_07505 at 1653.317 kb on - strand, within AO353_07505 at 1653.374 kb on + strand at 1653.374 kb on + strand at 1653.374 kb on + strand at 1653.374 kb on + strand at 1653.374 kb on + strand at 1653.374 kb on + strand at 1653.374 kb on + strand at 1653.375 kb on - strand at 1653.375 kb on - strand at 1653.387 kb on + strand at 1653.387 kb on + strand at 1653.387 kb on + strand at 1653.387 kb on + strand at 1653.387 kb on + strand at 1653.387 kb on + strand at 1653.409 kb on + strand at 1653.409 kb on + strand at 1653.410 kb on - strand at 1653.421 kb on + strand at 1653.422 kb on - strand at 1653.422 kb on - strand at 1653.422 kb on - strand at 1653.460 kb on + strand at 1653.460 kb on + strand at 1653.527 kb on + strand, within AO353_07510 at 1653.527 kb on + strand, within AO353_07510 at 1653.528 kb on - strand, within AO353_07510 at 1653.528 kb on - strand, within AO353_07510 at 1653.564 kb on - strand, within AO353_07510 at 1653.585 kb on + strand, within AO353_07510 at 1653.585 kb on + strand, within AO353_07510 at 1653.585 kb on + strand, within AO353_07510 at 1653.585 kb on + strand, within AO353_07510 at 1653.585 kb on + strand, within AO353_07510 at 1653.586 kb on - strand, within AO353_07510 at 1653.586 kb on - strand, within AO353_07510 at 1653.586 kb on - strand, within AO353_07510 at 1653.586 kb on - strand, within AO353_07510 at 1653.586 kb on - strand, within AO353_07510 at 1653.586 kb on - strand, within AO353_07510 at 1653.646 kb on + strand, within AO353_07510 at 1653.646 kb on + strand, within AO353_07510 at 1653.646 kb on + strand, within AO353_07510 at 1653.646 kb on + strand, within AO353_07510 at 1653.646 kb on + strand, within AO353_07510 at 1653.646 kb on + strand, within AO353_07510 at 1653.646 kb on + strand, within AO353_07510 at 1653.646 kb on + strand, within AO353_07510 at 1653.646 kb on + strand, within AO353_07510 at 1653.646 kb on + strand, within AO353_07510 at 1653.646 kb on + strand, within AO353_07510 at 1653.646 kb on + strand, within AO353_07510 at 1653.646 kb on + strand, within AO353_07510 at 1653.647 kb on - strand, within AO353_07510 at 1653.647 kb on - strand, within AO353_07510 at 1653.647 kb on - strand, within AO353_07510 at 1653.718 kb on + strand, within AO353_07510 at 1653.718 kb on + strand, within AO353_07510 at 1653.718 kb on + strand, within AO353_07510 at 1653.718 kb on + strand, within AO353_07510 at 1653.719 kb on - strand, within AO353_07510 at 1653.719 kb on - strand, within AO353_07510 at 1653.719 kb on - strand, within AO353_07510 at 1653.719 kb on - strand, within AO353_07510 at 1653.725 kb on + strand, within AO353_07510 at 1653.726 kb on - strand, within AO353_07510 at 1653.819 kb on + strand, within AO353_07510 at 1653.820 kb on - strand, within AO353_07510 at 1654.000 kb on + strand, within AO353_07510 at 1654.001 kb on - strand, within AO353_07510 at 1654.001 kb on - strand, within AO353_07510 at 1654.108 kb on + strand, within AO353_07510 at 1654.108 kb on + strand, within AO353_07510 at 1654.108 kb on + strand, within AO353_07510 at 1654.108 kb on + strand, within AO353_07510 at 1654.108 kb on + strand, within AO353_07510 at 1654.108 kb on + strand, within AO353_07510 at 1654.108 kb on + strand, within AO353_07510 at 1654.108 kb on + strand, within AO353_07510 at 1654.108 kb on + strand, within AO353_07510 at 1654.109 kb on - strand, within AO353_07510 at 1654.109 kb on - strand, within AO353_07510 at 1654.109 kb on - strand, within AO353_07510 at 1654.109 kb on - strand, within AO353_07510 at 1654.185 kb on + strand at 1654.185 kb on + strand at 1654.186 kb on - strand at 1654.186 kb on - strand at 1654.306 kb on + strand, within AO353_07515 at 1654.306 kb on + strand, within AO353_07515 at 1654.641 kb on + strand, within AO353_07515 at 1654.769 kb on - strand, within AO353_07515 at 1654.967 kb on + strand at 1654.967 kb on + strand at 1654.967 kb on + strand at 1654.967 kb on + strand at 1654.967 kb on + strand at 1654.967 kb on + strand at 1654.967 kb on + strand at 1654.967 kb on + strand at 1654.967 kb on + strand at 1654.967 kb on + strand at 1654.967 kb on + strand at 1654.967 kb on + strand at 1654.968 kb on - strand at 1654.968 kb on - strand at 1654.968 kb on - strand at 1654.968 kb on - strand at 1654.968 kb on - strand at 1654.968 kb on - strand at 1654.968 kb on - strand at 1654.968 kb on - strand at 1654.968 kb on - strand at 1654.968 kb on - strand at 1654.968 kb on - strand at 1654.973 kb on + strand at 1654.973 kb on + strand at 1654.973 kb on + strand at 1654.973 kb on + strand at 1654.973 kb on + strand at 1654.974 kb on - strand at 1654.974 kb on - strand at 1654.974 kb on - strand at 1654.974 kb on - strand at 1654.974 kb on - strand at 1654.974 kb on - strand at 1654.974 kb on - strand at 1654.974 kb on - strand at 1654.974 kb on - strand at 1654.974 kb on - strand at 1654.974 kb on - strand at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.301 kb on + strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.302 kb on - strand, within AO353_07520 at 1655.307 kb on + strand, within AO353_07520 at 1655.307 kb on + strand, within AO353_07520 at 1655.307 kb on + strand, within AO353_07520 at 1655.307 kb on + strand at 1655.307 kb on + strand, within AO353_07520 at 1655.307 kb on + strand, within AO353_07520 at 1655.307 kb on + strand, within AO353_07520 at 1655.307 kb on + strand, within AO353_07520 at 1655.307 kb on + strand, within AO353_07520 at 1655.307 kb on + strand, within AO353_07520 at 1655.307 kb on + strand, within AO353_07520 at 1655.307 kb on + strand, within AO353_07520 at 1655.307 kb on + strand, within AO353_07520 at 1655.308 kb on - strand, within AO353_07520 at 1655.308 kb on - strand, within AO353_07520 at 1655.308 kb on - strand, within AO353_07520 at 1655.308 kb on - strand, within AO353_07520 at 1655.308 kb on - strand, within AO353_07520 at 1655.308 kb on - strand, within AO353_07520 at 1655.308 kb on - strand, within AO353_07520 at 1655.308 kb on - strand, within AO353_07520 at 1655.308 kb on - strand, within AO353_07520 at 1655.308 kb on - strand, within AO353_07520 at 1655.308 kb on - strand, within AO353_07520 at 1655.308 kb on - strand, within AO353_07520 at 1655.395 kb on + strand, within AO353_07520 at 1655.593 kb on + strand, within AO353_07520 at 1655.593 kb on + strand, within AO353_07520 at 1655.594 kb on - strand, within AO353_07520 at 1655.594 kb on - strand, within AO353_07520 at 1655.645 kb on + strand, within AO353_07520 at 1655.645 kb on + strand, within AO353_07520 at 1655.645 kb on + strand, within AO353_07520 at 1655.645 kb on + strand, within AO353_07520 at 1655.645 kb on + strand, within AO353_07520 at 1655.645 kb on + strand, within AO353_07520 at 1655.645 kb on + strand, within AO353_07520 at 1655.645 kb on + strand, within AO353_07520 at 1655.645 kb on + strand, within AO353_07520 at 1655.646 kb on - strand, within AO353_07520 at 1655.646 kb on - strand, within AO353_07520 at 1655.646 kb on - strand, within AO353_07520 at 1655.646 kb on - strand, within AO353_07520 at 1655.649 kb on + strand, within AO353_07520 at 1655.649 kb on + strand, within AO353_07520 at 1655.649 kb on + strand, within AO353_07520 at 1655.650 kb on - strand, within AO353_07520 at 1655.650 kb on - strand, within AO353_07520 at 1655.650 kb on - strand, within AO353_07520 at 1655.650 kb on - strand, within AO353_07520 at 1655.772 kb on + strand, within AO353_07520 at 1655.772 kb on + strand, within AO353_07520 at 1655.772 kb on + strand, within AO353_07520 at 1655.772 kb on + strand, within AO353_07520 at 1655.772 kb on + strand, within AO353_07520 at 1655.772 kb on + strand, within AO353_07520 at 1655.772 kb on + strand, within AO353_07520 at 1655.773 kb on - strand, within AO353_07520 at 1655.782 kb on + strand, within AO353_07520
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 1,653,232 - AO353_07505 0.77 +0.5 1,653,288 + AO353_07505 0.85 -1.6 1,653,316 + AO353_07505 0.89 +0.5 1,653,316 + AO353_07505 0.89 +0.2 1,653,317 - AO353_07505 0.90 -1.1 1,653,317 - AO353_07505 0.90 -0.6 1,653,317 - AO353_07505 0.90 +0.9 1,653,374 + -0.4 1,653,374 + +0.8 1,653,374 + -1.9 1,653,374 + -1.0 1,653,374 + -0.1 1,653,374 + -0.0 1,653,374 + +1.1 1,653,375 - -1.6 1,653,375 - -0.1 1,653,387 + -0.7 1,653,387 + -1.4 1,653,387 + +1.7 1,653,387 + +1.4 1,653,387 + +1.4 1,653,387 + +1.6 1,653,409 + +1.0 1,653,409 + -1.5 1,653,410 - -0.9 1,653,421 + +1.0 1,653,422 - +0.0 1,653,422 - +0.2 1,653,422 - +0.9 1,653,460 + -0.6 1,653,460 + -0.2 1,653,527 + AO353_07510 0.18 -1.0 1,653,527 + AO353_07510 0.18 +0.2 1,653,528 - AO353_07510 0.18 +0.2 1,653,528 - AO353_07510 0.18 -0.6 1,653,564 - AO353_07510 0.22 -0.0 1,653,585 + AO353_07510 0.25 +1.3 1,653,585 + AO353_07510 0.25 -1.1 1,653,585 + AO353_07510 0.25 +0.3 1,653,585 + AO353_07510 0.25 +0.6 1,653,585 + AO353_07510 0.25 -0.6 1,653,586 - AO353_07510 0.25 -0.7 1,653,586 - AO353_07510 0.25 -1.7 1,653,586 - AO353_07510 0.25 +0.6 1,653,586 - AO353_07510 0.25 +1.8 1,653,586 - AO353_07510 0.25 -0.3 1,653,586 - AO353_07510 0.25 -0.4 1,653,646 + AO353_07510 0.32 +0.4 1,653,646 + AO353_07510 0.32 -0.2 1,653,646 + AO353_07510 0.32 +1.4 1,653,646 + AO353_07510 0.32 -1.3 1,653,646 + AO353_07510 0.32 +1.9 1,653,646 + AO353_07510 0.32 -0.7 1,653,646 + AO353_07510 0.32 -1.1 1,653,646 + AO353_07510 0.32 +0.4 1,653,646 + AO353_07510 0.32 +0.7 1,653,646 + AO353_07510 0.32 +0.6 1,653,646 + AO353_07510 0.32 -1.1 1,653,646 + AO353_07510 0.32 -1.5 1,653,646 + AO353_07510 0.32 -1.1 1,653,647 - AO353_07510 0.32 -2.0 1,653,647 - AO353_07510 0.32 -1.4 1,653,647 - AO353_07510 0.32 +0.2 1,653,718 + AO353_07510 0.41 -0.1 1,653,718 + AO353_07510 0.41 +0.0 1,653,718 + AO353_07510 0.41 -0.4 1,653,718 + AO353_07510 0.41 -0.9 1,653,719 - AO353_07510 0.41 +1.2 1,653,719 - AO353_07510 0.41 +0.3 1,653,719 - AO353_07510 0.41 -1.0 1,653,719 - AO353_07510 0.41 -0.1 1,653,725 + AO353_07510 0.42 -0.6 1,653,726 - AO353_07510 0.42 +0.9 1,653,819 + AO353_07510 0.54 +1.3 1,653,820 - AO353_07510 0.54 -1.5 1,654,000 + AO353_07510 0.76 +0.9 1,654,001 - AO353_07510 0.76 -1.6 1,654,001 - AO353_07510 0.76 -0.1 1,654,108 + AO353_07510 0.89 +0.2 1,654,108 + AO353_07510 0.89 +2.0 1,654,108 + AO353_07510 0.89 +0.5 1,654,108 + AO353_07510 0.89 +1.0 1,654,108 + AO353_07510 0.89 -0.0 1,654,108 + AO353_07510 0.89 -0.8 1,654,108 + AO353_07510 0.89 +1.0 1,654,108 + AO353_07510 0.89 -2.7 1,654,108 + AO353_07510 0.89 +1.7 1,654,109 - AO353_07510 0.89 -1.5 1,654,109 - AO353_07510 0.89 +0.7 1,654,109 - AO353_07510 0.89 +0.5 1,654,109 - AO353_07510 0.89 +1.6 1,654,185 + +0.7 1,654,185 + -0.1 1,654,186 - +0.2 1,654,186 - +0.8 1,654,306 + AO353_07515 0.16 +0.7 1,654,306 + AO353_07515 0.16 -1.4 1,654,641 + AO353_07515 0.62 -2.1 1,654,769 - AO353_07515 0.79 -2.5 1,654,967 + -0.8 1,654,967 + +0.5 1,654,967 + +1.0 1,654,967 + +0.3 1,654,967 + -0.0 1,654,967 + +1.2 1,654,967 + +0.5 1,654,967 + -2.6 1,654,967 + +0.8 1,654,967 + +0.0 1,654,967 + -0.2 1,654,967 + +0.0 1,654,968 - -0.4 1,654,968 - -0.3 1,654,968 - -1.5 1,654,968 - -0.8 1,654,968 - -0.1 1,654,968 - +0.2 1,654,968 - +0.8 1,654,968 - +0.0 1,654,968 - +0.5 1,654,968 - +0.2 1,654,968 - -0.6 1,654,973 + -0.5 1,654,973 + +0.2 1,654,973 + +0.9 1,654,973 + -0.9 1,654,973 + +0.5 1,654,974 - +1.8 1,654,974 - +0.0 1,654,974 - +1.0 1,654,974 - +2.2 1,654,974 - +0.2 1,654,974 - +1.1 1,654,974 - +2.2 1,654,974 - -1.4 1,654,974 - -0.8 1,654,974 - -0.4 1,654,974 - +0.2 1,655,301 + AO353_07520 0.33 +1.6 1,655,301 + AO353_07520 0.33 +0.4 1,655,301 + AO353_07520 0.33 +0.9 1,655,301 + AO353_07520 0.33 -0.4 1,655,301 + AO353_07520 0.33 +0.7 1,655,301 + AO353_07520 0.33 -0.8 1,655,301 + AO353_07520 0.33 +0.3 1,655,301 + AO353_07520 0.33 -2.0 1,655,301 + AO353_07520 0.33 -0.3 1,655,301 + AO353_07520 0.33 +1.7 1,655,301 + AO353_07520 0.33 +0.2 1,655,301 + AO353_07520 0.33 -0.8 1,655,301 + AO353_07520 0.33 -0.4 1,655,301 + AO353_07520 0.33 +0.8 1,655,301 + AO353_07520 0.33 -1.8 1,655,301 + AO353_07520 0.33 -1.0 1,655,301 + AO353_07520 0.33 -0.4 1,655,301 + AO353_07520 0.33 +0.4 1,655,302 - AO353_07520 0.33 +0.4 1,655,302 - AO353_07520 0.33 +1.1 1,655,302 - AO353_07520 0.33 +1.0 1,655,302 - AO353_07520 0.33 +1.4 1,655,302 - AO353_07520 0.33 -0.5 1,655,302 - AO353_07520 0.33 +1.2 1,655,302 - AO353_07520 0.33 +0.7 1,655,302 - AO353_07520 0.33 -0.2 1,655,302 - AO353_07520 0.33 -0.4 1,655,302 - AO353_07520 0.33 +0.6 1,655,302 - AO353_07520 0.33 +1.3 1,655,302 - AO353_07520 0.33 -0.9 1,655,302 - AO353_07520 0.33 +1.6 1,655,302 - AO353_07520 0.33 +2.0 1,655,302 - AO353_07520 0.33 +2.7 1,655,302 - AO353_07520 0.33 -1.0 1,655,302 - AO353_07520 0.33 +1.8 1,655,302 - AO353_07520 0.33 +1.2 1,655,307 + AO353_07520 0.33 -0.8 1,655,307 + AO353_07520 0.33 -0.4 1,655,307 + AO353_07520 0.33 +0.7 1,655,307 + +2.6 1,655,307 + AO353_07520 0.33 +1.0 1,655,307 + AO353_07520 0.33 -0.6 1,655,307 + AO353_07520 0.33 -0.8 1,655,307 + AO353_07520 0.33 -0.5 1,655,307 + AO353_07520 0.33 -2.0 1,655,307 + AO353_07520 0.33 -0.4 1,655,307 + AO353_07520 0.33 -0.4 1,655,307 + AO353_07520 0.33 -0.5 1,655,307 + AO353_07520 0.33 -1.4 1,655,308 - AO353_07520 0.34 +0.1 1,655,308 - AO353_07520 0.34 +0.3 1,655,308 - AO353_07520 0.34 -1.6 1,655,308 - AO353_07520 0.34 -0.6 1,655,308 - AO353_07520 0.34 -0.5 1,655,308 - AO353_07520 0.34 +0.3 1,655,308 - AO353_07520 0.34 +1.6 1,655,308 - AO353_07520 0.34 +0.5 1,655,308 - AO353_07520 0.34 -1.4 1,655,308 - AO353_07520 0.34 -0.4 1,655,308 - AO353_07520 0.34 +1.1 1,655,308 - AO353_07520 0.34 +0.7 1,655,395 + AO353_07520 0.41 -0.0 1,655,593 + AO353_07520 0.58 +0.4 1,655,593 + AO353_07520 0.58 +0.0 1,655,594 - AO353_07520 0.58 +1.5 1,655,594 - AO353_07520 0.58 -0.0 1,655,645 + AO353_07520 0.62 +1.3 1,655,645 + AO353_07520 0.62 -0.1 1,655,645 + AO353_07520 0.62 -2.0 1,655,645 + AO353_07520 0.62 +0.1 1,655,645 + AO353_07520 0.62 -1.0 1,655,645 + AO353_07520 0.62 -0.6 1,655,645 + AO353_07520 0.62 -2.0 1,655,645 + AO353_07520 0.62 +0.6 1,655,645 + AO353_07520 0.62 +0.4 1,655,646 - AO353_07520 0.62 +0.2 1,655,646 - AO353_07520 0.62 +1.3 1,655,646 - AO353_07520 0.62 -1.6 1,655,646 - AO353_07520 0.62 -0.2 1,655,649 + AO353_07520 0.62 +1.4 1,655,649 + AO353_07520 0.62 -1.9 1,655,649 + AO353_07520 0.62 -0.0 1,655,650 - AO353_07520 0.63 -0.8 1,655,650 - AO353_07520 0.63 -1.1 1,655,650 - AO353_07520 0.63 -0.4 1,655,650 - AO353_07520 0.63 -0.7 1,655,772 + AO353_07520 0.73 +1.2 1,655,772 + AO353_07520 0.73 -0.8 1,655,772 + AO353_07520 0.73 +0.7 1,655,772 + AO353_07520 0.73 -0.5 1,655,772 + AO353_07520 0.73 +1.0 1,655,772 + AO353_07520 0.73 +0.5 1,655,772 + AO353_07520 0.73 +2.8 1,655,773 - AO353_07520 0.73 -1.3 1,655,782 + AO353_07520 0.74 +0.7
Or see this region's nucleotide sequence