Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07445

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07435 and AO353_07440 are separated by 165 nucleotidesAO353_07440 and AO353_07445 overlap by 4 nucleotidesAO353_07445 and AO353_07450 overlap by 29 nucleotides AO353_07435: AO353_07435 - pyrroloquinoline quinone biosynthesis protein PqqB, at 1,637,305 to 1,638,216 _07435 AO353_07440: AO353_07440 - pyrroloquinoline quinone biosynthesis protein PqqC, at 1,638,382 to 1,639,134 _07440 AO353_07445: AO353_07445 - pyrroloquinoline quinone biosynthesis protein PqqD, at 1,639,131 to 1,639,406 _07445 AO353_07450: AO353_07450 - pyrroloquinoline quinone biosynthesis protein PqqE, at 1,639,378 to 1,640,553 _07450 Position (kb) 1639 1640Strain fitness (log2 ratio) -2 -1 0 1 2at 1638.190 kb on + strandat 1638.191 kb on - strandat 1638.214 kb on + strandat 1638.214 kb on + strandat 1638.214 kb on + strandat 1638.214 kb on + strandat 1638.214 kb on + strandat 1638.214 kb on + strandat 1638.214 kb on + strandat 1638.215 kb on - strandat 1638.215 kb on - strandat 1638.215 kb on - strandat 1638.215 kb on - strandat 1638.215 kb on - strandat 1638.215 kb on - strandat 1638.215 kb on - strandat 1638.215 kb on - strandat 1638.262 kb on - strandat 1638.262 kb on - strandat 1638.363 kb on + strandat 1638.442 kb on + strandat 1638.443 kb on - strandat 1638.443 kb on - strandat 1638.443 kb on - strandat 1638.443 kb on - strandat 1638.445 kb on + strandat 1638.445 kb on + strandat 1638.446 kb on - strandat 1638.446 kb on - strandat 1638.446 kb on - strandat 1638.446 kb on - strandat 1638.463 kb on + strand, within AO353_07440at 1638.464 kb on - strand, within AO353_07440at 1638.478 kb on + strand, within AO353_07440at 1638.478 kb on + strand, within AO353_07440at 1638.478 kb on + strand, within AO353_07440at 1638.478 kb on + strand, within AO353_07440at 1638.478 kb on + strand, within AO353_07440at 1638.478 kb on + strand, within AO353_07440at 1638.478 kb on + strand, within AO353_07440at 1638.479 kb on - strand, within AO353_07440at 1638.479 kb on - strand, within AO353_07440at 1638.479 kb on - strand, within AO353_07440at 1638.479 kb on - strand, within AO353_07440at 1638.479 kb on - strand, within AO353_07440at 1638.532 kb on + strand, within AO353_07440at 1638.532 kb on + strand, within AO353_07440at 1638.532 kb on + strand, within AO353_07440at 1638.532 kb on + strand, within AO353_07440at 1638.532 kb on + strand, within AO353_07440at 1638.533 kb on - strand, within AO353_07440at 1638.533 kb on - strand, within AO353_07440at 1638.533 kb on - strand, within AO353_07440at 1638.533 kb on - strand, within AO353_07440at 1638.533 kb on - strand, within AO353_07440at 1638.535 kb on + strand, within AO353_07440at 1638.535 kb on + strand, within AO353_07440at 1638.535 kb on + strand, within AO353_07440at 1638.535 kb on + strand, within AO353_07440at 1638.536 kb on - strand, within AO353_07440at 1638.536 kb on - strand, within AO353_07440at 1638.536 kb on - strand, within AO353_07440at 1638.536 kb on - strand, within AO353_07440at 1638.760 kb on + strand, within AO353_07440at 1638.760 kb on + strand, within AO353_07440at 1638.760 kb on + strand, within AO353_07440at 1638.760 kb on + strand, within AO353_07440at 1638.760 kb on + strand, within AO353_07440at 1638.761 kb on - strand, within AO353_07440at 1638.761 kb on - strand, within AO353_07440at 1638.761 kb on - strand, within AO353_07440at 1638.761 kb on - strand, within AO353_07440at 1638.761 kb on - strand, within AO353_07440at 1638.761 kb on - strand, within AO353_07440at 1638.761 kb on - strand, within AO353_07440at 1638.896 kb on - strand, within AO353_07440at 1638.896 kb on - strand, within AO353_07440at 1638.901 kb on + strand, within AO353_07440at 1638.901 kb on + strand, within AO353_07440at 1638.901 kb on + strand, within AO353_07440at 1638.901 kb on + strand, within AO353_07440at 1638.901 kb on + strand, within AO353_07440at 1638.902 kb on - strand, within AO353_07440at 1638.902 kb on - strand, within AO353_07440at 1638.902 kb on - strand, within AO353_07440at 1638.970 kb on + strand, within AO353_07440at 1638.970 kb on + strand, within AO353_07440at 1638.970 kb on + strand, within AO353_07440at 1638.970 kb on + strand, within AO353_07440at 1638.970 kb on + strand, within AO353_07440at 1638.970 kb on + strand, within AO353_07440at 1638.971 kb on - strand, within AO353_07440at 1638.971 kb on - strand, within AO353_07440at 1638.971 kb on - strand, within AO353_07440at 1638.971 kb on - strand, within AO353_07440at 1638.971 kb on - strand, within AO353_07440at 1638.971 kb on - strand, within AO353_07440at 1638.971 kb on - strand, within AO353_07440at 1638.971 kb on - strand, within AO353_07440at 1638.971 kb on - strand, within AO353_07440at 1638.971 kb on - strand, within AO353_07440at 1638.971 kb on - strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.979 kb on + strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.980 kb on - strand, within AO353_07440at 1638.981 kb on + strand, within AO353_07440at 1638.982 kb on - strand, within AO353_07440at 1638.982 kb on - strand, within AO353_07440at 1638.982 kb on - strand, within AO353_07440at 1638.982 kb on - strand, within AO353_07440at 1639.063 kb on + strandat 1639.063 kb on + strandat 1639.064 kb on - strandat 1639.064 kb on - strandat 1639.064 kb on - strandat 1639.064 kb on - strandat 1639.064 kb on - strandat 1639.064 kb on - strandat 1639.084 kb on + strandat 1639.116 kb on + strandat 1639.116 kb on + strandat 1639.116 kb on + strandat 1639.116 kb on + strandat 1639.117 kb on - strandat 1639.117 kb on - strandat 1639.130 kb on + strandat 1639.130 kb on + strandat 1639.186 kb on - strand, within AO353_07445at 1639.219 kb on - strand, within AO353_07445at 1639.280 kb on + strand, within AO353_07445at 1639.454 kb on + strandat 1639.478 kb on - strandat 1639.478 kb on - strandat 1639.478 kb on - strandat 1639.501 kb on + strand, within AO353_07450at 1639.501 kb on + strand, within AO353_07450at 1639.501 kb on + strand, within AO353_07450at 1639.502 kb on - strand, within AO353_07450at 1639.681 kb on + strand, within AO353_07450at 1639.681 kb on + strand, within AO353_07450at 1639.682 kb on - strand, within AO353_07450at 1639.682 kb on - strand, within AO353_07450at 1639.682 kb on - strand, within AO353_07450at 1639.682 kb on - strand, within AO353_07450at 1639.682 kb on - strand, within AO353_07450at 1639.682 kb on - strand, within AO353_07450at 1639.682 kb on - strand, within AO353_07450at 1639.797 kb on + strand, within AO353_07450at 1639.797 kb on + strand, within AO353_07450at 1639.797 kb on + strand, within AO353_07450at 1639.797 kb on + strand, within AO353_07450at 1639.797 kb on + strand, within AO353_07450at 1639.797 kb on + strand, within AO353_07450at 1639.797 kb on + strand, within AO353_07450at 1639.798 kb on - strand, within AO353_07450at 1639.798 kb on - strand, within AO353_07450at 1639.798 kb on - strand, within AO353_07450at 1639.857 kb on - strand, within AO353_07450at 1639.941 kb on + strand, within AO353_07450at 1639.941 kb on + strand, within AO353_07450at 1639.941 kb on + strand, within AO353_07450at 1639.941 kb on + strand, within AO353_07450at 1639.941 kb on + strand, within AO353_07450at 1639.942 kb on - strand, within AO353_07450at 1639.942 kb on - strand, within AO353_07450at 1639.942 kb on - strand, within AO353_07450at 1639.942 kb on - strand, within AO353_07450at 1639.942 kb on - strand, within AO353_07450at 1639.942 kb on - strand, within AO353_07450at 1639.942 kb on - strand, within AO353_07450at 1639.988 kb on - strand, within AO353_07450at 1639.988 kb on - strand, within AO353_07450at 1639.988 kb on - strand, within AO353_07450at 1640.128 kb on + strand, within AO353_07450at 1640.128 kb on + strand, within AO353_07450at 1640.128 kb on + strand, within AO353_07450at 1640.129 kb on - strand, within AO353_07450at 1640.131 kb on + strand, within AO353_07450at 1640.131 kb on + strand, within AO353_07450at 1640.131 kb on + strand, within AO353_07450at 1640.131 kb on + strand, within AO353_07450at 1640.131 kb on + strand, within AO353_07450at 1640.132 kb on - strand, within AO353_07450at 1640.282 kb on - strand, within AO353_07450at 1640.282 kb on - strand, within AO353_07450at 1640.315 kb on - strand, within AO353_07450

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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1,638,190 + -0.5
1,638,191 - -0.8
1,638,214 + +1.2
1,638,214 + +0.9
1,638,214 + +0.4
1,638,214 + +0.0
1,638,214 + -0.6
1,638,214 + -1.6
1,638,214 + +1.0
1,638,215 - -0.4
1,638,215 - -0.0
1,638,215 - -0.6
1,638,215 - -0.4
1,638,215 - -1.4
1,638,215 - +0.1
1,638,215 - +0.6
1,638,215 - +1.0
1,638,262 - -0.3
1,638,262 - +0.8
1,638,363 + -0.4
1,638,442 + +1.5
1,638,443 - +0.5
1,638,443 - +0.6
1,638,443 - +1.1
1,638,443 - +0.2
1,638,445 + -0.5
1,638,445 + +0.2
1,638,446 - +0.1
1,638,446 - -0.5
1,638,446 - -0.5
1,638,446 - +0.3
1,638,463 + AO353_07440 0.11 +0.6
1,638,464 - AO353_07440 0.11 +0.3
1,638,478 + AO353_07440 0.13 +0.2
1,638,478 + AO353_07440 0.13 +1.0
1,638,478 + AO353_07440 0.13 +0.3
1,638,478 + AO353_07440 0.13 -0.9
1,638,478 + AO353_07440 0.13 +1.5
1,638,478 + AO353_07440 0.13 -1.7
1,638,478 + AO353_07440 0.13 +2.2
1,638,479 - AO353_07440 0.13 +1.1
1,638,479 - AO353_07440 0.13 -0.7
1,638,479 - AO353_07440 0.13 -1.3
1,638,479 - AO353_07440 0.13 -0.5
1,638,479 - AO353_07440 0.13 +0.5
1,638,532 + AO353_07440 0.20 +0.6
1,638,532 + AO353_07440 0.20 -0.4
1,638,532 + AO353_07440 0.20 -1.1
1,638,532 + AO353_07440 0.20 -0.6
1,638,532 + AO353_07440 0.20 +0.1
1,638,533 - AO353_07440 0.20 +0.8
1,638,533 - AO353_07440 0.20 -0.6
1,638,533 - AO353_07440 0.20 -1.0
1,638,533 - AO353_07440 0.20 +0.5
1,638,533 - AO353_07440 0.20 -1.3
1,638,535 + AO353_07440 0.20 +0.9
1,638,535 + AO353_07440 0.20 +0.4
1,638,535 + AO353_07440 0.20 +0.4
1,638,535 + AO353_07440 0.20 -1.4
1,638,536 - AO353_07440 0.20 -0.2
1,638,536 - AO353_07440 0.20 -0.4
1,638,536 - AO353_07440 0.20 +1.2
1,638,536 - AO353_07440 0.20 +0.4
1,638,760 + AO353_07440 0.50 -1.3
1,638,760 + AO353_07440 0.50 -0.1
1,638,760 + AO353_07440 0.50 +0.7
1,638,760 + AO353_07440 0.50 +0.1
1,638,760 + AO353_07440 0.50 -0.4
1,638,761 - AO353_07440 0.50 -0.4
1,638,761 - AO353_07440 0.50 +0.2
1,638,761 - AO353_07440 0.50 +0.2
1,638,761 - AO353_07440 0.50 +0.1
1,638,761 - AO353_07440 0.50 -1.1
1,638,761 - AO353_07440 0.50 -0.3
1,638,761 - AO353_07440 0.50 +0.5
1,638,896 - AO353_07440 0.68 -1.6
1,638,896 - AO353_07440 0.68 +1.0
1,638,901 + AO353_07440 0.69 +1.4
1,638,901 + AO353_07440 0.69 -0.4
1,638,901 + AO353_07440 0.69 -0.1
1,638,901 + AO353_07440 0.69 -1.0
1,638,901 + AO353_07440 0.69 -0.1
1,638,902 - AO353_07440 0.69 -0.1
1,638,902 - AO353_07440 0.69 -0.4
1,638,902 - AO353_07440 0.69 -0.3
1,638,970 + AO353_07440 0.78 -0.8
1,638,970 + AO353_07440 0.78 +0.6
1,638,970 + AO353_07440 0.78 +0.2
1,638,970 + AO353_07440 0.78 -0.0
1,638,970 + AO353_07440 0.78 -0.3
1,638,970 + AO353_07440 0.78 +0.4
1,638,971 - AO353_07440 0.78 -1.3
1,638,971 - AO353_07440 0.78 -0.9
1,638,971 - AO353_07440 0.78 +1.0
1,638,971 - AO353_07440 0.78 -0.6
1,638,971 - AO353_07440 0.78 -0.0
1,638,971 - AO353_07440 0.78 +0.7
1,638,971 - AO353_07440 0.78 +1.8
1,638,971 - AO353_07440 0.78 -0.6
1,638,971 - AO353_07440 0.78 +0.5
1,638,971 - AO353_07440 0.78 +0.1
1,638,971 - AO353_07440 0.78 -1.1
1,638,979 + AO353_07440 0.79 -1.5
1,638,979 + AO353_07440 0.79 +0.0
1,638,979 + AO353_07440 0.79 +1.3
1,638,979 + AO353_07440 0.79 +0.1
1,638,979 + AO353_07440 0.79 -0.7
1,638,979 + AO353_07440 0.79 +0.1
1,638,979 + AO353_07440 0.79 -1.7
1,638,979 + AO353_07440 0.79 +0.8
1,638,979 + AO353_07440 0.79 -0.4
1,638,979 + AO353_07440 0.79 +0.1
1,638,979 + AO353_07440 0.79 +0.4
1,638,979 + AO353_07440 0.79 +2.5
1,638,979 + AO353_07440 0.79 +0.9
1,638,979 + AO353_07440 0.79 +0.0
1,638,979 + AO353_07440 0.79 +1.4
1,638,979 + AO353_07440 0.79 -0.1
1,638,980 - AO353_07440 0.79 -0.1
1,638,980 - AO353_07440 0.79 -0.5
1,638,980 - AO353_07440 0.79 -0.8
1,638,980 - AO353_07440 0.79 +0.8
1,638,980 - AO353_07440 0.79 +1.3
1,638,980 - AO353_07440 0.79 -0.2
1,638,980 - AO353_07440 0.79 -0.1
1,638,980 - AO353_07440 0.79 -0.8
1,638,980 - AO353_07440 0.79 +0.5
1,638,980 - AO353_07440 0.79 -0.5
1,638,980 - AO353_07440 0.79 -0.3
1,638,980 - AO353_07440 0.79 +0.9
1,638,980 - AO353_07440 0.79 -0.1
1,638,980 - AO353_07440 0.79 +0.1
1,638,980 - AO353_07440 0.79 +1.5
1,638,980 - AO353_07440 0.79 +0.7
1,638,981 + AO353_07440 0.80 +1.0
1,638,982 - AO353_07440 0.80 +0.2
1,638,982 - AO353_07440 0.80 -0.3
1,638,982 - AO353_07440 0.80 +0.4
1,638,982 - AO353_07440 0.80 +2.2
1,639,063 + -1.0
1,639,063 + -0.9
1,639,064 - -0.3
1,639,064 - -0.7
1,639,064 - -1.0
1,639,064 - +0.6
1,639,064 - +0.6
1,639,064 - +0.2
1,639,084 + +0.2
1,639,116 + -1.1
1,639,116 + -1.0
1,639,116 + -0.9
1,639,116 + +0.9
1,639,117 - -0.6
1,639,117 - +0.1
1,639,130 + +0.7
1,639,130 + +0.2
1,639,186 - AO353_07445 0.20 -1.9
1,639,219 - AO353_07445 0.32 -0.4
1,639,280 + AO353_07445 0.54 -0.4
1,639,454 + +0.0
1,639,478 - -0.9
1,639,478 - +1.4
1,639,478 - -1.5
1,639,501 + AO353_07450 0.10 -1.1
1,639,501 + AO353_07450 0.10 +0.7
1,639,501 + AO353_07450 0.10 -1.2
1,639,502 - AO353_07450 0.11 +1.8
1,639,681 + AO353_07450 0.26 +0.6
1,639,681 + AO353_07450 0.26 +0.6
1,639,682 - AO353_07450 0.26 -0.1
1,639,682 - AO353_07450 0.26 +0.0
1,639,682 - AO353_07450 0.26 -0.8
1,639,682 - AO353_07450 0.26 -1.1
1,639,682 - AO353_07450 0.26 -0.1
1,639,682 - AO353_07450 0.26 -0.4
1,639,682 - AO353_07450 0.26 +2.1
1,639,797 + AO353_07450 0.36 +1.8
1,639,797 + AO353_07450 0.36 +1.4
1,639,797 + AO353_07450 0.36 +0.9
1,639,797 + AO353_07450 0.36 +0.8
1,639,797 + AO353_07450 0.36 +0.1
1,639,797 + AO353_07450 0.36 -0.4
1,639,797 + AO353_07450 0.36 +2.2
1,639,798 - AO353_07450 0.36 +0.3
1,639,798 - AO353_07450 0.36 -0.1
1,639,798 - AO353_07450 0.36 +1.5
1,639,857 - AO353_07450 0.41 +1.0
1,639,941 + AO353_07450 0.48 +0.4
1,639,941 + AO353_07450 0.48 -0.0
1,639,941 + AO353_07450 0.48 +0.5
1,639,941 + AO353_07450 0.48 +0.6
1,639,941 + AO353_07450 0.48 -0.3
1,639,942 - AO353_07450 0.48 -1.8
1,639,942 - AO353_07450 0.48 -0.7
1,639,942 - AO353_07450 0.48 +0.1
1,639,942 - AO353_07450 0.48 +0.2
1,639,942 - AO353_07450 0.48 -1.1
1,639,942 - AO353_07450 0.48 +0.3
1,639,942 - AO353_07450 0.48 -0.5
1,639,988 - AO353_07450 0.52 -0.5
1,639,988 - AO353_07450 0.52 -0.5
1,639,988 - AO353_07450 0.52 +0.1
1,640,128 + AO353_07450 0.64 +1.2
1,640,128 + AO353_07450 0.64 +0.2
1,640,128 + AO353_07450 0.64 -1.8
1,640,129 - AO353_07450 0.64 -1.7
1,640,131 + AO353_07450 0.64 -0.6
1,640,131 + AO353_07450 0.64 +0.5
1,640,131 + AO353_07450 0.64 -0.4
1,640,131 + AO353_07450 0.64 +1.6
1,640,131 + AO353_07450 0.64 +0.8
1,640,132 - AO353_07450 0.64 +0.5
1,640,282 - AO353_07450 0.77 +0.8
1,640,282 - AO353_07450 0.77 -0.7
1,640,315 - AO353_07450 0.80 -0.1

Or see this region's nucleotide sequence