Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05605

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05595 and AO353_05600 are separated by 16 nucleotidesAO353_05600 and AO353_05605 are separated by 8 nucleotidesAO353_05605 and AO353_05610 are separated by 190 nucleotidesAO353_05610 and AO353_05615 are separated by 106 nucleotides AO353_05595: AO353_05595 - phosphoglucosamine mutase, at 1,235,503 to 1,236,840 _05595 AO353_05600: AO353_05600 - dihydropteroate synthase, at 1,236,857 to 1,237,708 _05600 AO353_05605: AO353_05605 - ATP-dependent metalloprotease, at 1,237,717 to 1,239,618 _05605 AO353_05610: AO353_05610 - 23S rRNA methyltransferase, at 1,239,809 to 1,240,459 _05610 AO353_05615: AO353_05615 - RNA-binding protein, at 1,240,566 to 1,240,874 _05615 Position (kb) 1237 1238 1239 1240Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1236.841 kb on - strandat 1236.841 kb on - strandat 1236.841 kb on - strandat 1236.859 kb on - strandat 1237.698 kb on - strandat 1237.698 kb on - strandat 1237.698 kb on - strandat 1237.698 kb on - strandat 1237.698 kb on - strandat 1237.698 kb on - strandat 1237.698 kb on - strandat 1237.719 kb on - strandat 1237.719 kb on - strandat 1237.719 kb on - strandat 1237.719 kb on - strandat 1237.719 kb on - strandat 1239.630 kb on - strandat 1239.630 kb on - strandat 1239.630 kb on - strandat 1239.630 kb on - strandat 1239.630 kb on - strandat 1239.630 kb on - strandat 1239.630 kb on - strandat 1239.630 kb on - strandat 1239.630 kb on - strandat 1239.630 kb on - strandat 1239.630 kb on - strandat 1239.634 kb on - strandat 1239.690 kb on - strandat 1239.695 kb on - strandat 1239.695 kb on - strandat 1239.695 kb on - strandat 1239.695 kb on - strandat 1239.695 kb on - strandat 1239.695 kb on - strandat 1239.695 kb on - strandat 1239.698 kb on - strandat 1239.698 kb on - strandat 1239.698 kb on - strandat 1239.698 kb on - strandat 1239.698 kb on - strandat 1239.698 kb on - strandat 1239.698 kb on - strandat 1239.703 kb on - strandat 1239.703 kb on - strandat 1239.703 kb on - strandat 1239.703 kb on - strandat 1239.703 kb on - strandat 1239.703 kb on - strandat 1239.707 kb on - strandat 1239.707 kb on - strandat 1239.753 kb on - strandat 1239.760 kb on - strandat 1239.760 kb on - strandat 1239.760 kb on - strandat 1239.780 kb on - strandat 1239.800 kb on - strandat 1239.800 kb on - strandat 1240.478 kb on - strandat 1240.493 kb on - strandat 1240.540 kb on - strandat 1240.566 kb on - strandat 1240.566 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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1,236,841 - +0.8
1,236,841 - -0.5
1,236,841 - -0.1
1,236,859 - +0.2
1,237,698 - -1.6
1,237,698 - -1.8
1,237,698 - +1.1
1,237,698 - +0.3
1,237,698 - -0.6
1,237,698 - -1.4
1,237,698 - -0.5
1,237,719 - +0.2
1,237,719 - +0.1
1,237,719 - -0.2
1,237,719 - -0.1
1,237,719 - -0.3
1,239,630 - -1.0
1,239,630 - -0.9
1,239,630 - -1.9
1,239,630 - -0.0
1,239,630 - -1.1
1,239,630 - -1.4
1,239,630 - +0.2
1,239,630 - +1.2
1,239,630 - +1.1
1,239,630 - -1.1
1,239,630 - -2.7
1,239,634 - +0.5
1,239,690 - +0.1
1,239,695 - -1.5
1,239,695 - +0.3
1,239,695 - +0.6
1,239,695 - +2.1
1,239,695 - -0.4
1,239,695 - +0.1
1,239,695 - -0.5
1,239,698 - +1.7
1,239,698 - +1.1
1,239,698 - -0.1
1,239,698 - -1.4
1,239,698 - -0.0
1,239,698 - -1.2
1,239,698 - +0.1
1,239,703 - -0.9
1,239,703 - -1.0
1,239,703 - +0.8
1,239,703 - +0.1
1,239,703 - +0.5
1,239,703 - +0.2
1,239,707 - -1.5
1,239,707 - +0.7
1,239,753 - +2.5
1,239,760 - +3.1
1,239,760 - -1.2
1,239,760 - +2.1
1,239,780 - +0.1
1,239,800 - -1.5
1,239,800 - -0.7
1,240,478 - +0.0
1,240,493 - +1.5
1,240,540 - -0.5
1,240,566 - +0.2
1,240,566 - +1.1

Or see this region's nucleotide sequence