Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05595

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05585 and AO353_05590 are separated by 4 nucleotidesAO353_05590 and AO353_05595 are separated by 66 nucleotidesAO353_05595 and AO353_05600 are separated by 16 nucleotidesAO353_05600 and AO353_05605 are separated by 8 nucleotides AO353_05585: AO353_05585 - preprotein translocase subunit SecG, at 1,234,293 to 1,234,676 _05585 AO353_05590: AO353_05590 - triosephosphate isomerase, at 1,234,681 to 1,235,436 _05590 AO353_05595: AO353_05595 - phosphoglucosamine mutase, at 1,235,503 to 1,236,840 _05595 AO353_05600: AO353_05600 - dihydropteroate synthase, at 1,236,857 to 1,237,708 _05600 AO353_05605: AO353_05605 - ATP-dependent metalloprotease, at 1,237,717 to 1,239,618 _05605 Position (kb) 1235 1236 1237Strain fitness (log2 ratio) -2 -1 0 1at 1235.425 kb on - strandat 1235.442 kb on - strandat 1235.442 kb on - strandat 1235.488 kb on - strandat 1235.488 kb on - strandat 1236.841 kb on - strandat 1236.841 kb on - strandat 1236.841 kb on - strandat 1236.859 kb on - strandat 1237.698 kb on - strandat 1237.698 kb on - strandat 1237.698 kb on - strandat 1237.698 kb on - strandat 1237.698 kb on - strandat 1237.698 kb on - strandat 1237.698 kb on - strandat 1237.719 kb on - strandat 1237.719 kb on - strandat 1237.719 kb on - strandat 1237.719 kb on - strandat 1237.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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1,235,425 - +0.9
1,235,442 - -1.2
1,235,442 - -0.3
1,235,488 - +0.5
1,235,488 - +1.1
1,236,841 - +0.8
1,236,841 - -0.5
1,236,841 - -0.1
1,236,859 - +0.2
1,237,698 - -1.6
1,237,698 - -1.8
1,237,698 - +1.1
1,237,698 - +0.3
1,237,698 - -0.6
1,237,698 - -1.4
1,237,698 - -0.5
1,237,719 - +0.2
1,237,719 - +0.1
1,237,719 - -0.2
1,237,719 - -0.1
1,237,719 - -0.3

Or see this region's nucleotide sequence