Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_05235 and AO353_05240 are separated by 43 nucleotides AO353_05240 and AO353_05245 overlap by 1 nucleotides AO353_05245 and AO353_05250 are separated by 179 nucleotides
AO353_05235: AO353_05235 - septum formation protein Maf, at 1,153,071 to 1,153,688
_05235
AO353_05240: AO353_05240 - rod shape-determining protein MreD, at 1,153,732 to 1,154,214
_05240
AO353_05245: AO353_05245 - rod shape-determining protein MreC, at 1,154,214 to 1,155,302
_05245
AO353_05250: AO353_05250 - rod shape-determining protein MreB, at 1,155,482 to 1,156,519
_05250
Position (kb)
1154
1155
1156 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1153.280 kb on + strand, within AO353_05235 at 1153.280 kb on + strand, within AO353_05235 at 1153.280 kb on + strand, within AO353_05235 at 1153.281 kb on - strand, within AO353_05235 at 1153.281 kb on - strand, within AO353_05235 at 1153.281 kb on - strand, within AO353_05235 at 1153.333 kb on + strand, within AO353_05235 at 1153.334 kb on - strand, within AO353_05235 at 1153.400 kb on + strand, within AO353_05235 at 1153.400 kb on + strand, within AO353_05235 at 1153.400 kb on + strand, within AO353_05235 at 1153.400 kb on + strand, within AO353_05235 at 1153.400 kb on + strand, within AO353_05235 at 1153.400 kb on + strand, within AO353_05235 at 1153.400 kb on + strand, within AO353_05235 at 1153.400 kb on + strand, within AO353_05235 at 1153.400 kb on + strand, within AO353_05235 at 1153.400 kb on + strand, within AO353_05235 at 1153.400 kb on + strand, within AO353_05235 at 1153.401 kb on - strand, within AO353_05235 at 1153.401 kb on - strand, within AO353_05235 at 1153.401 kb on - strand, within AO353_05235 at 1153.401 kb on - strand, within AO353_05235 at 1153.437 kb on + strand, within AO353_05235 at 1153.437 kb on + strand, within AO353_05235 at 1153.437 kb on + strand, within AO353_05235 at 1153.437 kb on + strand, within AO353_05235 at 1153.437 kb on + strand, within AO353_05235 at 1153.437 kb on + strand, within AO353_05235 at 1153.437 kb on + strand, within AO353_05235 at 1153.437 kb on + strand, within AO353_05235 at 1153.437 kb on + strand, within AO353_05235 at 1153.437 kb on + strand, within AO353_05235 at 1153.437 kb on + strand, within AO353_05235 at 1153.438 kb on - strand, within AO353_05235 at 1153.438 kb on - strand, within AO353_05235 at 1153.438 kb on - strand, within AO353_05235 at 1153.438 kb on - strand, within AO353_05235 at 1153.438 kb on - strand, within AO353_05235 at 1153.438 kb on - strand, within AO353_05235 at 1153.438 kb on - strand, within AO353_05235 at 1153.438 kb on - strand, within AO353_05235 at 1153.438 kb on - strand, within AO353_05235 at 1153.438 kb on - strand, within AO353_05235 at 1153.438 kb on - strand, within AO353_05235 at 1153.438 kb on - strand, within AO353_05235 at 1153.558 kb on + strand, within AO353_05235 at 1153.558 kb on + strand, within AO353_05235 at 1153.558 kb on + strand, within AO353_05235 at 1153.558 kb on + strand, within AO353_05235 at 1153.559 kb on - strand, within AO353_05235 at 1153.559 kb on - strand, within AO353_05235 at 1153.559 kb on - strand, within AO353_05235 at 1153.559 kb on - strand, within AO353_05235 at 1153.559 kb on - strand, within AO353_05235 at 1153.559 kb on - strand, within AO353_05235 at 1153.577 kb on + strand, within AO353_05235 at 1153.733 kb on + strand at 1153.733 kb on + strand at 1153.733 kb on + strand at 1153.734 kb on - strand at 1154.084 kb on + strand, within AO353_05240 at 1154.084 kb on + strand, within AO353_05240 at 1154.084 kb on + strand, within AO353_05240 at 1154.085 kb on - strand, within AO353_05240 at 1154.140 kb on + strand, within AO353_05240 at 1154.141 kb on - strand, within AO353_05240 at 1154.215 kb on + strand at 1154.216 kb on - strand at 1154.216 kb on - strand at 1154.216 kb on - strand at 1154.216 kb on - strand at 1154.216 kb on - strand at 1155.339 kb on - strand at 1155.370 kb on - strand at 1155.376 kb on - strand at 1155.376 kb on - strand at 1155.376 kb on - strand at 1155.376 kb on - strand at 1155.376 kb on - strand at 1155.415 kb on - strand at 1155.415 kb on - strand at 1155.464 kb on + strand at 1155.464 kb on + strand at 1155.464 kb on + strand at 1155.464 kb on + strand at 1155.464 kb on + strand at 1155.464 kb on + strand at 1155.465 kb on - strand at 1155.465 kb on - strand at 1155.465 kb on - strand at 1155.465 kb on - strand at 1155.465 kb on - strand at 1155.465 kb on - strand at 1155.465 kb on - strand at 1155.465 kb on - strand at 1155.465 kb on - strand at 1155.465 kb on - strand at 1155.483 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 1,153,280 + AO353_05235 0.34 +0.8 1,153,280 + AO353_05235 0.34 +1.1 1,153,280 + AO353_05235 0.34 +0.6 1,153,281 - AO353_05235 0.34 +0.9 1,153,281 - AO353_05235 0.34 +2.1 1,153,281 - AO353_05235 0.34 -0.3 1,153,333 + AO353_05235 0.42 -0.5 1,153,334 - AO353_05235 0.43 -1.9 1,153,400 + AO353_05235 0.53 +0.1 1,153,400 + AO353_05235 0.53 +1.1 1,153,400 + AO353_05235 0.53 -0.3 1,153,400 + AO353_05235 0.53 +1.8 1,153,400 + AO353_05235 0.53 +2.3 1,153,400 + AO353_05235 0.53 +1.8 1,153,400 + AO353_05235 0.53 +0.1 1,153,400 + AO353_05235 0.53 -1.3 1,153,400 + AO353_05235 0.53 -1.1 1,153,400 + AO353_05235 0.53 +0.9 1,153,400 + AO353_05235 0.53 +0.9 1,153,401 - AO353_05235 0.53 +0.1 1,153,401 - AO353_05235 0.53 +1.1 1,153,401 - AO353_05235 0.53 +0.3 1,153,401 - AO353_05235 0.53 +0.1 1,153,437 + AO353_05235 0.59 +1.9 1,153,437 + AO353_05235 0.59 +0.1 1,153,437 + AO353_05235 0.59 +0.5 1,153,437 + AO353_05235 0.59 +2.4 1,153,437 + AO353_05235 0.59 +2.1 1,153,437 + AO353_05235 0.59 +0.9 1,153,437 + AO353_05235 0.59 +1.5 1,153,437 + AO353_05235 0.59 -1.9 1,153,437 + AO353_05235 0.59 +1.2 1,153,437 + AO353_05235 0.59 +1.3 1,153,437 + AO353_05235 0.59 +1.3 1,153,438 - AO353_05235 0.59 +0.7 1,153,438 - AO353_05235 0.59 -1.9 1,153,438 - AO353_05235 0.59 +2.1 1,153,438 - AO353_05235 0.59 +0.4 1,153,438 - AO353_05235 0.59 -0.5 1,153,438 - AO353_05235 0.59 +0.3 1,153,438 - AO353_05235 0.59 +0.2 1,153,438 - AO353_05235 0.59 +1.2 1,153,438 - AO353_05235 0.59 -0.5 1,153,438 - AO353_05235 0.59 +0.3 1,153,438 - AO353_05235 0.59 +0.8 1,153,438 - AO353_05235 0.59 -0.5 1,153,558 + AO353_05235 0.79 +0.7 1,153,558 + AO353_05235 0.79 +0.1 1,153,558 + AO353_05235 0.79 +1.9 1,153,558 + AO353_05235 0.79 +1.8 1,153,559 - AO353_05235 0.79 -0.9 1,153,559 - AO353_05235 0.79 -0.3 1,153,559 - AO353_05235 0.79 +1.2 1,153,559 - AO353_05235 0.79 -0.5 1,153,559 - AO353_05235 0.79 +1.5 1,153,559 - AO353_05235 0.79 -1.5 1,153,577 + AO353_05235 0.82 -1.3 1,153,733 + +1.2 1,153,733 + -0.5 1,153,733 + +1.0 1,153,734 - -1.4 1,154,084 + AO353_05240 0.73 +2.2 1,154,084 + AO353_05240 0.73 +2.1 1,154,084 + AO353_05240 0.73 +2.8 1,154,085 - AO353_05240 0.73 +1.4 1,154,140 + AO353_05240 0.84 +3.1 1,154,141 - AO353_05240 0.85 +2.3 1,154,215 + +2.8 1,154,216 - +2.5 1,154,216 - +2.1 1,154,216 - +4.0 1,154,216 - +1.7 1,154,216 - -0.9 1,155,339 - -1.2 1,155,370 - +1.6 1,155,376 - +0.3 1,155,376 - -1.2 1,155,376 - +0.3 1,155,376 - +1.3 1,155,376 - +0.1 1,155,415 - +0.4 1,155,415 - +1.2 1,155,464 + +1.5 1,155,464 + +0.5 1,155,464 + +3.3 1,155,464 + +1.8 1,155,464 + +0.6 1,155,464 + +2.1 1,155,465 - +0.6 1,155,465 - +0.3 1,155,465 - +2.2 1,155,465 - +1.6 1,155,465 - +0.8 1,155,465 - +2.5 1,155,465 - +1.3 1,155,465 - +0.2 1,155,465 - +2.5 1,155,465 - +2.0 1,155,483 + +0.9
Or see this region's nucleotide sequence