Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05245

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05235 and AO353_05240 are separated by 43 nucleotidesAO353_05240 and AO353_05245 overlap by 1 nucleotidesAO353_05245 and AO353_05250 are separated by 179 nucleotides AO353_05235: AO353_05235 - septum formation protein Maf, at 1,153,071 to 1,153,688 _05235 AO353_05240: AO353_05240 - rod shape-determining protein MreD, at 1,153,732 to 1,154,214 _05240 AO353_05245: AO353_05245 - rod shape-determining protein MreC, at 1,154,214 to 1,155,302 _05245 AO353_05250: AO353_05250 - rod shape-determining protein MreB, at 1,155,482 to 1,156,519 _05250 Position (kb) 1154 1155 1156Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1153.280 kb on + strand, within AO353_05235at 1153.280 kb on + strand, within AO353_05235at 1153.280 kb on + strand, within AO353_05235at 1153.281 kb on - strand, within AO353_05235at 1153.281 kb on - strand, within AO353_05235at 1153.281 kb on - strand, within AO353_05235at 1153.333 kb on + strand, within AO353_05235at 1153.334 kb on - strand, within AO353_05235at 1153.400 kb on + strand, within AO353_05235at 1153.400 kb on + strand, within AO353_05235at 1153.400 kb on + strand, within AO353_05235at 1153.400 kb on + strand, within AO353_05235at 1153.400 kb on + strand, within AO353_05235at 1153.400 kb on + strand, within AO353_05235at 1153.400 kb on + strand, within AO353_05235at 1153.400 kb on + strand, within AO353_05235at 1153.400 kb on + strand, within AO353_05235at 1153.400 kb on + strand, within AO353_05235at 1153.400 kb on + strand, within AO353_05235at 1153.401 kb on - strand, within AO353_05235at 1153.401 kb on - strand, within AO353_05235at 1153.401 kb on - strand, within AO353_05235at 1153.401 kb on - strand, within AO353_05235at 1153.437 kb on + strand, within AO353_05235at 1153.437 kb on + strand, within AO353_05235at 1153.437 kb on + strand, within AO353_05235at 1153.437 kb on + strand, within AO353_05235at 1153.437 kb on + strand, within AO353_05235at 1153.437 kb on + strand, within AO353_05235at 1153.437 kb on + strand, within AO353_05235at 1153.437 kb on + strand, within AO353_05235at 1153.437 kb on + strand, within AO353_05235at 1153.437 kb on + strand, within AO353_05235at 1153.437 kb on + strand, within AO353_05235at 1153.438 kb on - strand, within AO353_05235at 1153.438 kb on - strand, within AO353_05235at 1153.438 kb on - strand, within AO353_05235at 1153.438 kb on - strand, within AO353_05235at 1153.438 kb on - strand, within AO353_05235at 1153.438 kb on - strand, within AO353_05235at 1153.438 kb on - strand, within AO353_05235at 1153.438 kb on - strand, within AO353_05235at 1153.438 kb on - strand, within AO353_05235at 1153.438 kb on - strand, within AO353_05235at 1153.438 kb on - strand, within AO353_05235at 1153.438 kb on - strand, within AO353_05235at 1153.558 kb on + strand, within AO353_05235at 1153.558 kb on + strand, within AO353_05235at 1153.558 kb on + strand, within AO353_05235at 1153.558 kb on + strand, within AO353_05235at 1153.559 kb on - strand, within AO353_05235at 1153.559 kb on - strand, within AO353_05235at 1153.559 kb on - strand, within AO353_05235at 1153.559 kb on - strand, within AO353_05235at 1153.559 kb on - strand, within AO353_05235at 1153.559 kb on - strand, within AO353_05235at 1153.577 kb on + strand, within AO353_05235at 1153.733 kb on + strandat 1153.733 kb on + strandat 1153.733 kb on + strandat 1153.734 kb on - strandat 1154.084 kb on + strand, within AO353_05240at 1154.084 kb on + strand, within AO353_05240at 1154.084 kb on + strand, within AO353_05240at 1154.085 kb on - strand, within AO353_05240at 1154.140 kb on + strand, within AO353_05240at 1154.141 kb on - strand, within AO353_05240at 1154.215 kb on + strandat 1154.216 kb on - strandat 1154.216 kb on - strandat 1154.216 kb on - strandat 1154.216 kb on - strandat 1154.216 kb on - strandat 1155.339 kb on - strandat 1155.370 kb on - strandat 1155.376 kb on - strandat 1155.376 kb on - strandat 1155.376 kb on - strandat 1155.376 kb on - strandat 1155.376 kb on - strandat 1155.415 kb on - strandat 1155.415 kb on - strandat 1155.464 kb on + strandat 1155.464 kb on + strandat 1155.464 kb on + strandat 1155.464 kb on + strandat 1155.464 kb on + strandat 1155.464 kb on + strandat 1155.465 kb on - strandat 1155.465 kb on - strandat 1155.465 kb on - strandat 1155.465 kb on - strandat 1155.465 kb on - strandat 1155.465 kb on - strandat 1155.465 kb on - strandat 1155.465 kb on - strandat 1155.465 kb on - strandat 1155.465 kb on - strandat 1155.483 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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1,153,280 + AO353_05235 0.34 +0.8
1,153,280 + AO353_05235 0.34 +1.1
1,153,280 + AO353_05235 0.34 +0.6
1,153,281 - AO353_05235 0.34 +0.9
1,153,281 - AO353_05235 0.34 +2.1
1,153,281 - AO353_05235 0.34 -0.3
1,153,333 + AO353_05235 0.42 -0.5
1,153,334 - AO353_05235 0.43 -1.9
1,153,400 + AO353_05235 0.53 +0.1
1,153,400 + AO353_05235 0.53 +1.1
1,153,400 + AO353_05235 0.53 -0.3
1,153,400 + AO353_05235 0.53 +1.8
1,153,400 + AO353_05235 0.53 +2.3
1,153,400 + AO353_05235 0.53 +1.8
1,153,400 + AO353_05235 0.53 +0.1
1,153,400 + AO353_05235 0.53 -1.3
1,153,400 + AO353_05235 0.53 -1.1
1,153,400 + AO353_05235 0.53 +0.9
1,153,400 + AO353_05235 0.53 +0.9
1,153,401 - AO353_05235 0.53 +0.1
1,153,401 - AO353_05235 0.53 +1.1
1,153,401 - AO353_05235 0.53 +0.3
1,153,401 - AO353_05235 0.53 +0.1
1,153,437 + AO353_05235 0.59 +1.9
1,153,437 + AO353_05235 0.59 +0.1
1,153,437 + AO353_05235 0.59 +0.5
1,153,437 + AO353_05235 0.59 +2.4
1,153,437 + AO353_05235 0.59 +2.1
1,153,437 + AO353_05235 0.59 +0.9
1,153,437 + AO353_05235 0.59 +1.5
1,153,437 + AO353_05235 0.59 -1.9
1,153,437 + AO353_05235 0.59 +1.2
1,153,437 + AO353_05235 0.59 +1.3
1,153,437 + AO353_05235 0.59 +1.3
1,153,438 - AO353_05235 0.59 +0.7
1,153,438 - AO353_05235 0.59 -1.9
1,153,438 - AO353_05235 0.59 +2.1
1,153,438 - AO353_05235 0.59 +0.4
1,153,438 - AO353_05235 0.59 -0.5
1,153,438 - AO353_05235 0.59 +0.3
1,153,438 - AO353_05235 0.59 +0.2
1,153,438 - AO353_05235 0.59 +1.2
1,153,438 - AO353_05235 0.59 -0.5
1,153,438 - AO353_05235 0.59 +0.3
1,153,438 - AO353_05235 0.59 +0.8
1,153,438 - AO353_05235 0.59 -0.5
1,153,558 + AO353_05235 0.79 +0.7
1,153,558 + AO353_05235 0.79 +0.1
1,153,558 + AO353_05235 0.79 +1.9
1,153,558 + AO353_05235 0.79 +1.8
1,153,559 - AO353_05235 0.79 -0.9
1,153,559 - AO353_05235 0.79 -0.3
1,153,559 - AO353_05235 0.79 +1.2
1,153,559 - AO353_05235 0.79 -0.5
1,153,559 - AO353_05235 0.79 +1.5
1,153,559 - AO353_05235 0.79 -1.5
1,153,577 + AO353_05235 0.82 -1.3
1,153,733 + +1.2
1,153,733 + -0.5
1,153,733 + +1.0
1,153,734 - -1.4
1,154,084 + AO353_05240 0.73 +2.2
1,154,084 + AO353_05240 0.73 +2.1
1,154,084 + AO353_05240 0.73 +2.8
1,154,085 - AO353_05240 0.73 +1.4
1,154,140 + AO353_05240 0.84 +3.1
1,154,141 - AO353_05240 0.85 +2.3
1,154,215 + +2.8
1,154,216 - +2.5
1,154,216 - +2.1
1,154,216 - +4.0
1,154,216 - +1.7
1,154,216 - -0.9
1,155,339 - -1.2
1,155,370 - +1.6
1,155,376 - +0.3
1,155,376 - -1.2
1,155,376 - +0.3
1,155,376 - +1.3
1,155,376 - +0.1
1,155,415 - +0.4
1,155,415 - +1.2
1,155,464 + +1.5
1,155,464 + +0.5
1,155,464 + +3.3
1,155,464 + +1.8
1,155,464 + +0.6
1,155,464 + +2.1
1,155,465 - +0.6
1,155,465 - +0.3
1,155,465 - +2.2
1,155,465 - +1.6
1,155,465 - +0.8
1,155,465 - +2.5
1,155,465 - +1.3
1,155,465 - +0.2
1,155,465 - +2.5
1,155,465 - +2.0
1,155,483 + +0.9

Or see this region's nucleotide sequence