Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03500 and AO353_03505 are separated by 185 nucleotides AO353_03505 and AO353_03510 are separated by 41 nucleotides
AO353_03500: AO353_03500 - Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) <small>(from data)</small>, at 748,236 to 751,088
_03500
AO353_03505: AO353_03505 - serine dehydratase, at 751,274 to 752,650
_03505
AO353_03510: AO353_03510 - glycine cleavage system protein T, at 752,692 to 753,816
_03510
Position (kb) 751
752
753 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.607 kb on - strand, within AO353_03500 at 750.618 kb on + strand, within AO353_03500 at 750.618 kb on + strand, within AO353_03500 at 750.618 kb on + strand, within AO353_03500 at 750.619 kb on - strand, within AO353_03500 at 750.952 kb on - strand at 750.973 kb on - strand at 751.002 kb on + strand at 751.002 kb on + strand at 751.002 kb on + strand at 751.003 kb on - strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.081 kb on - strand at 751.081 kb on - strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.146 kb on + strand at 751.146 kb on + strand at 751.147 kb on - strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.251 kb on + strand at 751.252 kb on - strand at 751.252 kb on - strand at 751.281 kb on + strand at 751.638 kb on - strand, within AO353_03505 at 751.703 kb on + strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.771 kb on + strand, within AO353_03505 at 751.771 kb on + strand, within AO353_03505 at 751.832 kb on + strand, within AO353_03505 at 751.832 kb on + strand, within AO353_03505 at 751.833 kb on - strand, within AO353_03505 at 752.084 kb on + strand, within AO353_03505 at 752.084 kb on + strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.261 kb on + strand, within AO353_03505 at 752.261 kb on + strand, within AO353_03505 at 752.261 kb on + strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.601 kb on - strand at 752.601 kb on - strand at 752.601 kb on - strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.773 kb on + strand at 752.956 kb on + strand, within AO353_03510 at 753.410 kb on - strand, within AO353_03510 at 753.472 kb on - strand, within AO353_03510 at 753.472 kb on - strand, within AO353_03510 at 753.527 kb on + strand, within AO353_03510
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 750,513 + AO353_03500 0.80 +0.4 750,513 + AO353_03500 0.80 -0.3 750,513 + AO353_03500 0.80 +0.8 750,513 + AO353_03500 0.80 -0.3 750,513 + AO353_03500 0.80 +1.8 750,513 + AO353_03500 0.80 +0.8 750,513 + AO353_03500 0.80 +0.3 750,514 - AO353_03500 0.80 +0.3 750,514 - AO353_03500 0.80 -0.3 750,514 - AO353_03500 0.80 -1.9 750,514 - AO353_03500 0.80 +0.4 750,514 - AO353_03500 0.80 +0.8 750,514 - AO353_03500 0.80 +0.0 750,514 - AO353_03500 0.80 +0.8 750,579 + AO353_03500 0.82 +1.4 750,579 + AO353_03500 0.82 -3.0 750,579 + AO353_03500 0.82 -0.7 750,579 + AO353_03500 0.82 +0.8 750,579 + AO353_03500 0.82 -2.4 750,580 - AO353_03500 0.82 -0.5 750,580 - AO353_03500 0.82 -1.7 750,580 - AO353_03500 0.82 +0.3 750,580 - AO353_03500 0.82 +0.1 750,607 - AO353_03500 0.83 -1.9 750,618 + AO353_03500 0.83 +1.7 750,618 + AO353_03500 0.83 -0.5 750,618 + AO353_03500 0.83 -0.3 750,619 - AO353_03500 0.84 +2.1 750,952 - +0.3 750,973 - -1.3 751,002 + -0.1 751,002 + +1.3 751,002 + -0.8 751,003 - +0.8 751,080 + +0.9 751,080 + +1.8 751,080 + +0.3 751,080 + +1.5 751,080 + +0.5 751,081 - -0.6 751,081 - -0.7 751,091 + -0.3 751,091 + -0.2 751,091 + +2.8 751,091 + -0.8 751,091 + -0.4 751,091 + +0.5 751,091 + +0.6 751,091 + +0.7 751,091 + -0.0 751,091 + -0.3 751,091 + -1.6 751,091 + +1.0 751,091 + -1.3 751,092 - -0.5 751,092 - +0.9 751,092 - +0.3 751,092 - +0.5 751,092 - -0.5 751,092 - +0.7 751,092 - +0.8 751,092 - +0.4 751,092 - -0.5 751,146 + -1.0 751,146 + -0.1 751,147 - +0.0 751,249 + -2.9 751,249 + +0.4 751,249 + +1.5 751,249 + +0.7 751,249 + +1.8 751,249 + -0.5 751,250 - +0.0 751,250 - -1.2 751,250 - -1.5 751,250 - -0.2 751,250 - +0.4 751,250 - -0.2 751,251 + -0.2 751,252 - -1.7 751,252 - -0.6 751,281 + -0.7 751,638 - AO353_03505 0.26 -0.7 751,703 + AO353_03505 0.31 -0.7 751,704 - AO353_03505 0.31 -1.3 751,704 - AO353_03505 0.31 +0.3 751,704 - AO353_03505 0.31 +0.1 751,704 - AO353_03505 0.31 +0.2 751,771 + AO353_03505 0.36 -2.1 751,771 + AO353_03505 0.36 -0.7 751,832 + AO353_03505 0.41 -0.5 751,832 + AO353_03505 0.41 +1.8 751,833 - AO353_03505 0.41 -0.0 752,084 + AO353_03505 0.59 -1.0 752,084 + AO353_03505 0.59 +0.2 752,085 - AO353_03505 0.59 +0.6 752,085 - AO353_03505 0.59 -0.0 752,085 - AO353_03505 0.59 +0.6 752,085 - AO353_03505 0.59 +0.8 752,180 + AO353_03505 0.66 -1.0 752,180 + AO353_03505 0.66 -0.0 752,180 + AO353_03505 0.66 -1.3 752,180 + AO353_03505 0.66 +1.4 752,180 + AO353_03505 0.66 -0.3 752,181 - AO353_03505 0.66 -2.0 752,181 - AO353_03505 0.66 -0.0 752,181 - AO353_03505 0.66 +1.0 752,181 - AO353_03505 0.66 -0.7 752,181 - AO353_03505 0.66 -1.0 752,183 + AO353_03505 0.66 -0.6 752,183 + AO353_03505 0.66 -0.1 752,183 + AO353_03505 0.66 +0.9 752,183 + AO353_03505 0.66 +0.3 752,183 + AO353_03505 0.66 +1.3 752,183 + AO353_03505 0.66 +0.6 752,183 + AO353_03505 0.66 -2.1 752,183 + AO353_03505 0.66 +0.7 752,183 + AO353_03505 0.66 -2.2 752,183 + AO353_03505 0.66 +0.8 752,183 + AO353_03505 0.66 -0.8 752,183 + AO353_03505 0.66 -0.2 752,183 + AO353_03505 0.66 +0.4 752,184 - AO353_03505 0.66 -0.7 752,184 - AO353_03505 0.66 +1.0 752,184 - AO353_03505 0.66 -1.2 752,184 - AO353_03505 0.66 +0.3 752,184 - AO353_03505 0.66 +0.8 752,184 - AO353_03505 0.66 +0.2 752,184 - AO353_03505 0.66 +0.6 752,184 - AO353_03505 0.66 +1.6 752,184 - AO353_03505 0.66 +0.5 752,184 - AO353_03505 0.66 +0.5 752,184 - AO353_03505 0.66 -0.1 752,184 - AO353_03505 0.66 -1.2 752,261 + AO353_03505 0.72 -0.8 752,261 + AO353_03505 0.72 +0.6 752,261 + AO353_03505 0.72 -1.3 752,262 - AO353_03505 0.72 -1.4 752,262 - AO353_03505 0.72 -0.7 752,262 - AO353_03505 0.72 +0.8 752,262 - AO353_03505 0.72 +1.0 752,601 - -1.0 752,601 - -0.7 752,601 - -0.0 752,691 + +0.8 752,691 + -1.5 752,691 + +0.3 752,691 + -0.1 752,691 + -0.1 752,691 + -0.9 752,691 + +0.1 752,691 + -1.2 752,691 + +0.6 752,691 + +1.8 752,691 + -0.5 752,691 + -0.7 752,691 + -0.3 752,691 + +0.8 752,691 + -0.3 752,691 + -1.0 752,691 + +0.5 752,691 + +0.3 752,692 - -1.5 752,692 - -1.1 752,692 - +0.5 752,692 - +0.5 752,692 - +0.3 752,692 - -0.8 752,692 - +1.6 752,692 - +0.4 752,692 - -0.7 752,692 - -2.2 752,692 - +0.8 752,692 - +0.2 752,692 - -2.2 752,692 - -1.4 752,692 - -0.8 752,692 - +0.6 752,692 - +0.7 752,692 - +0.5 752,692 - -1.2 752,692 - +1.4 752,773 + -0.7 752,956 + AO353_03510 0.23 -0.6 753,410 - AO353_03510 0.64 +0.8 753,472 - AO353_03510 0.69 -2.6 753,472 - AO353_03510 0.69 -0.8 753,527 + AO353_03510 0.74 +0.8
Or see this region's nucleotide sequence