Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02815

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02810 and AO353_02815 overlap by 4 nucleotidesAO353_02815 and AO353_02820 are separated by 239 nucleotides AO353_02810: AO353_02810 - histidine kinase, at 595,696 to 597,042 _02810 AO353_02815: AO353_02815 - transcriptional regulator, at 597,039 to 597,716 _02815 AO353_02820: AO353_02820 - dienelactone hydrolase, at 597,956 to 598,747 _02820 Position (kb) 597 598Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 596.148 kb on + strand, within AO353_02810at 596.148 kb on + strand, within AO353_02810at 596.149 kb on - strand, within AO353_02810at 596.175 kb on - strand, within AO353_02810at 596.543 kb on + strand, within AO353_02810at 596.579 kb on + strand, within AO353_02810at 596.579 kb on + strand, within AO353_02810at 596.607 kb on + strand, within AO353_02810at 596.626 kb on - strand, within AO353_02810at 596.654 kb on + strand, within AO353_02810at 596.654 kb on + strand, within AO353_02810at 596.654 kb on + strand, within AO353_02810at 596.654 kb on + strand, within AO353_02810at 596.655 kb on - strand, within AO353_02810at 596.655 kb on - strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.790 kb on - strand, within AO353_02810at 596.790 kb on - strand, within AO353_02810at 596.790 kb on - strand, within AO353_02810at 596.790 kb on - strand, within AO353_02810at 596.795 kb on + strand, within AO353_02810at 596.795 kb on + strand, within AO353_02810at 596.795 kb on + strand, within AO353_02810at 596.795 kb on + strand, within AO353_02810at 596.795 kb on + strand, within AO353_02810at 596.796 kb on - strand, within AO353_02810at 596.796 kb on - strand, within AO353_02810at 596.796 kb on - strand, within AO353_02810at 596.887 kb on + strand, within AO353_02810at 596.887 kb on + strand, within AO353_02810at 597.064 kb on + strandat 597.064 kb on + strandat 597.065 kb on - strandat 597.238 kb on + strand, within AO353_02815at 597.238 kb on + strand, within AO353_02815at 597.239 kb on - strand, within AO353_02815at 597.239 kb on - strand, within AO353_02815at 597.239 kb on - strand, within AO353_02815at 597.260 kb on - strand, within AO353_02815at 597.350 kb on + strand, within AO353_02815at 597.424 kb on + strand, within AO353_02815at 597.424 kb on + strand, within AO353_02815at 597.424 kb on + strand, within AO353_02815at 597.425 kb on - strand, within AO353_02815at 597.425 kb on - strandat 597.425 kb on - strand, within AO353_02815at 597.425 kb on - strand, within AO353_02815at 597.604 kb on + strand, within AO353_02815at 597.604 kb on + strand, within AO353_02815at 597.604 kb on + strand, within AO353_02815at 597.605 kb on - strand, within AO353_02815at 597.605 kb on - strand, within AO353_02815at 597.605 kb on - strandat 597.605 kb on - strand, within AO353_02815at 597.752 kb on + strandat 597.752 kb on + strandat 597.753 kb on - strandat 597.753 kb on - strandat 597.771 kb on + strandat 597.771 kb on + strandat 597.771 kb on + strandat 597.771 kb on + strandat 597.771 kb on + strandat 597.772 kb on - strandat 597.772 kb on - strandat 597.772 kb on - strandat 597.772 kb on - strandat 597.774 kb on + strandat 597.774 kb on + strandat 597.774 kb on + strandat 597.774 kb on + strandat 597.775 kb on - strandat 597.775 kb on - strandat 597.775 kb on - strandat 597.852 kb on + strandat 597.853 kb on - strandat 597.853 kb on - strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.882 kb on - strandat 597.920 kb on + strandat 597.920 kb on + strandat 597.921 kb on - strandat 597.940 kb on + strandat 597.940 kb on + strandat 597.941 kb on - strandat 597.941 kb on - strandat 597.963 kb on + strandat 597.964 kb on - strandat 597.981 kb on + strandat 597.981 kb on + strandat 597.982 kb on - strandat 598.034 kb on + strandat 598.034 kb on + strandat 598.034 kb on + strandat 598.034 kb on + strandat 598.035 kb on - strandat 598.035 kb on - strandat 598.035 kb on - strandat 598.067 kb on + strand, within AO353_02820at 598.067 kb on + strand, within AO353_02820at 598.067 kb on + strand, within AO353_02820at 598.068 kb on - strand, within AO353_02820at 598.068 kb on - strand, within AO353_02820at 598.070 kb on + strand, within AO353_02820at 598.070 kb on + strand, within AO353_02820at 598.070 kb on + strand, within AO353_02820at 598.071 kb on - strand, within AO353_02820at 598.071 kb on - strand, within AO353_02820at 598.071 kb on - strand, within AO353_02820at 598.071 kb on - strand, within AO353_02820at 598.076 kb on + strand, within AO353_02820at 598.076 kb on + strand, within AO353_02820at 598.145 kb on + strand, within AO353_02820at 598.145 kb on + strand, within AO353_02820at 598.146 kb on - strand, within AO353_02820at 598.146 kb on - strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.446 kb on + strand, within AO353_02820at 598.446 kb on + strand, within AO353_02820at 598.447 kb on - strand, within AO353_02820at 598.494 kb on + strand, within AO353_02820at 598.495 kb on - strand, within AO353_02820at 598.495 kb on - strand, within AO353_02820at 598.495 kb on - strand, within AO353_02820at 598.500 kb on + strand, within AO353_02820at 598.501 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.679 kb on + strandat 598.679 kb on + strandat 598.680 kb on - strandat 598.680 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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596,148 + AO353_02810 0.34 +1.2
596,148 + AO353_02810 0.34 +0.8
596,149 - AO353_02810 0.34 -0.2
596,175 - AO353_02810 0.36 -0.6
596,543 + AO353_02810 0.63 -0.4
596,579 + AO353_02810 0.66 +0.1
596,579 + AO353_02810 0.66 -0.4
596,607 + AO353_02810 0.68 -1.6
596,626 - AO353_02810 0.69 +0.2
596,654 + AO353_02810 0.71 +0.0
596,654 + AO353_02810 0.71 -1.6
596,654 + AO353_02810 0.71 +0.5
596,654 + AO353_02810 0.71 +0.4
596,655 - AO353_02810 0.71 +0.8
596,655 - AO353_02810 0.71 -0.8
596,789 + AO353_02810 0.81 -0.4
596,789 + AO353_02810 0.81 +0.6
596,789 + AO353_02810 0.81 -1.7
596,789 + AO353_02810 0.81 -1.4
596,789 + AO353_02810 0.81 +0.8
596,789 + AO353_02810 0.81 +1.1
596,789 + AO353_02810 0.81 -0.2
596,789 + AO353_02810 0.81 +1.1
596,789 + AO353_02810 0.81 -0.2
596,790 - AO353_02810 0.81 -1.8
596,790 - AO353_02810 0.81 -0.2
596,790 - AO353_02810 0.81 +0.0
596,790 - AO353_02810 0.81 +1.0
596,795 + AO353_02810 0.82 +1.0
596,795 + AO353_02810 0.82 -0.2
596,795 + AO353_02810 0.82 -0.8
596,795 + AO353_02810 0.82 +1.3
596,795 + AO353_02810 0.82 +0.7
596,796 - AO353_02810 0.82 +1.8
596,796 - AO353_02810 0.82 +0.6
596,796 - AO353_02810 0.82 +0.3
596,887 + AO353_02810 0.88 +1.8
596,887 + AO353_02810 0.88 +0.9
597,064 + +2.0
597,064 + +2.0
597,065 - +2.1
597,238 + AO353_02815 0.29 +0.8
597,238 + AO353_02815 0.29 +2.3
597,239 - AO353_02815 0.29 +1.7
597,239 - AO353_02815 0.29 +2.5
597,239 - AO353_02815 0.29 +0.6
597,260 - AO353_02815 0.33 +3.9
597,350 + AO353_02815 0.46 +1.1
597,424 + AO353_02815 0.57 -0.6
597,424 + AO353_02815 0.57 +1.3
597,424 + AO353_02815 0.57 +0.6
597,425 - AO353_02815 0.57 +1.1
597,425 - +1.4
597,425 - AO353_02815 0.57 -2.2
597,425 - AO353_02815 0.57 +0.8
597,604 + AO353_02815 0.83 -0.6
597,604 + AO353_02815 0.83 +1.8
597,604 + AO353_02815 0.83 -0.8
597,605 - AO353_02815 0.83 +1.8
597,605 - AO353_02815 0.83 +3.4
597,605 - -0.2
597,605 - AO353_02815 0.83 +1.6
597,752 + +0.8
597,752 + +0.9
597,753 - +0.4
597,753 - +0.9
597,771 + +1.8
597,771 + +2.0
597,771 + +2.6
597,771 + +0.3
597,771 + +2.3
597,772 - +2.2
597,772 - +0.4
597,772 - +0.2
597,772 - +0.5
597,774 + +0.4
597,774 + +0.9
597,774 + +2.1
597,774 + +0.5
597,775 - +0.4
597,775 - +1.4
597,775 - -0.1
597,852 + -1.0
597,853 - +1.7
597,853 - -0.4
597,876 + +2.2
597,876 + +2.0
597,876 + +0.8
597,876 + +1.6
597,876 + +0.2
597,876 + +0.9
597,876 + +0.4
597,876 + +0.7
597,876 + +0.7
597,876 + +2.1
597,876 + +2.4
597,876 + -0.1
597,876 + +2.0
597,877 - -1.1
597,877 - -2.3
597,877 - +0.8
597,877 - +0.7
597,877 - -0.9
597,877 - +2.1
597,877 - -0.7
597,877 - +0.3
597,877 - +1.3
597,877 - +2.4
597,877 - -0.2
597,877 - +2.4
597,882 - +1.4
597,920 + +0.3
597,920 + +0.4
597,921 - +0.4
597,940 + +1.4
597,940 + -1.9
597,941 - +1.0
597,941 - +0.5
597,963 + -1.1
597,964 - +2.1
597,981 + -0.5
597,981 + -1.6
597,982 - +0.4
598,034 + +0.2
598,034 + -2.2
598,034 + +0.5
598,034 + -0.7
598,035 - +0.9
598,035 - +1.7
598,035 - -1.2
598,067 + AO353_02820 0.14 -2.0
598,067 + AO353_02820 0.14 +0.2
598,067 + AO353_02820 0.14 +0.4
598,068 - AO353_02820 0.14 -1.7
598,068 - AO353_02820 0.14 +0.3
598,070 + AO353_02820 0.14 -1.9
598,070 + AO353_02820 0.14 -0.6
598,070 + AO353_02820 0.14 -2.0
598,071 - AO353_02820 0.15 -0.4
598,071 - AO353_02820 0.15 -0.6
598,071 - AO353_02820 0.15 +1.0
598,071 - AO353_02820 0.15 +1.1
598,076 + AO353_02820 0.15 -0.2
598,076 + AO353_02820 0.15 +1.3
598,145 + AO353_02820 0.24 -0.5
598,145 + AO353_02820 0.24 +0.9
598,146 - AO353_02820 0.24 -0.9
598,146 - AO353_02820 0.24 -1.9
598,204 + AO353_02820 0.31 -1.9
598,204 + AO353_02820 0.31 +0.8
598,204 + AO353_02820 0.31 +0.8
598,204 + AO353_02820 0.31 -0.6
598,204 + AO353_02820 0.31 +0.2
598,204 + AO353_02820 0.31 -0.7
598,204 + AO353_02820 0.31 +1.7
598,204 + AO353_02820 0.31 -1.2
598,205 - AO353_02820 0.31 +0.5
598,205 - AO353_02820 0.31 +0.1
598,205 - AO353_02820 0.31 +0.9
598,205 - AO353_02820 0.31 +0.4
598,205 - AO353_02820 0.31 +0.1
598,205 - AO353_02820 0.31 -1.9
598,208 + AO353_02820 0.32 -0.2
598,208 + AO353_02820 0.32 +1.3
598,208 + AO353_02820 0.32 +0.4
598,208 + AO353_02820 0.32 -1.0
598,208 + AO353_02820 0.32 -1.4
598,208 + AO353_02820 0.32 +0.1
598,208 + AO353_02820 0.32 +0.4
598,208 + AO353_02820 0.32 -0.7
598,209 - AO353_02820 0.32 -1.1
598,209 - AO353_02820 0.32 +1.8
598,209 - AO353_02820 0.32 +0.2
598,209 - AO353_02820 0.32 -0.8
598,209 - AO353_02820 0.32 +0.7
598,209 - AO353_02820 0.32 +0.5
598,209 - AO353_02820 0.32 +0.1
598,209 - AO353_02820 0.32 +2.6
598,209 - AO353_02820 0.32 -1.0
598,209 - AO353_02820 0.32 -0.8
598,209 - AO353_02820 0.32 +0.3
598,209 - AO353_02820 0.32 +0.1
598,209 - AO353_02820 0.32 -0.7
598,209 - AO353_02820 0.32 +0.4
598,209 - AO353_02820 0.32 +0.3
598,446 + AO353_02820 0.62 -0.0
598,446 + AO353_02820 0.62 +0.4
598,447 - AO353_02820 0.62 +1.2
598,494 + AO353_02820 0.68 +0.8
598,495 - AO353_02820 0.68 -0.4
598,495 - AO353_02820 0.68 -2.3
598,495 - AO353_02820 0.68 -1.4
598,500 + AO353_02820 0.69 +0.4
598,501 - AO353_02820 0.69 -0.4
598,584 - AO353_02820 0.79 +0.9
598,584 - AO353_02820 0.79 -1.8
598,584 - AO353_02820 0.79 -1.0
598,584 - AO353_02820 0.79 +0.9
598,584 - AO353_02820 0.79 +0.9
598,584 - AO353_02820 0.79 -0.5
598,584 - AO353_02820 0.79 +1.5
598,585 + AO353_02820 0.79 -0.7
598,585 + AO353_02820 0.79 -1.6
598,585 + AO353_02820 0.79 +0.9
598,585 + AO353_02820 0.79 -0.9
598,585 + AO353_02820 0.79 -0.0
598,585 + AO353_02820 0.79 -1.0
598,585 + AO353_02820 0.79 -0.3
598,585 + AO353_02820 0.79 +0.9
598,585 + AO353_02820 0.79 -0.3
598,585 + AO353_02820 0.79 +0.5
598,586 - AO353_02820 0.80 +0.2
598,586 - AO353_02820 0.80 -0.3
598,586 - AO353_02820 0.80 -0.1
598,586 - AO353_02820 0.80 -0.6
598,586 - AO353_02820 0.80 -1.4
598,586 - AO353_02820 0.80 +2.0
598,679 + -1.5
598,679 + -1.6
598,680 - +1.1
598,680 - -0.2

Or see this region's nucleotide sequence