Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02800

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02795 and AO353_02800 are separated by 145 nucleotidesAO353_02800 and AO353_02805 are separated by 336 nucleotides AO353_02795: AO353_02795 - carnitine dehydratase, at 591,669 to 592,850 _02795 AO353_02800: AO353_02800 - C4-dicarboxylate transporter, at 592,996 to 594,330 _02800 AO353_02805: AO353_02805 - AraC family transcriptional regulator, at 594,667 to 595,665 _02805 Position (kb) 592 593 594 595Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 592.139 kb on - strand, within AO353_02795at 592.141 kb on + strand, within AO353_02795at 592.141 kb on + strand, within AO353_02795at 592.142 kb on - strand, within AO353_02795at 592.142 kb on - strand, within AO353_02795at 592.142 kb on - strand, within AO353_02795at 592.147 kb on + strand, within AO353_02795at 592.147 kb on + strand, within AO353_02795at 592.148 kb on - strand, within AO353_02795at 592.148 kb on - strand, within AO353_02795at 592.398 kb on - strand, within AO353_02795at 592.399 kb on + strand, within AO353_02795at 592.399 kb on + strand, within AO353_02795at 592.399 kb on + strand, within AO353_02795at 592.399 kb on + strand, within AO353_02795at 592.399 kb on + strand, within AO353_02795at 592.399 kb on + strand, within AO353_02795at 592.400 kb on - strand, within AO353_02795at 592.400 kb on - strand, within AO353_02795at 592.400 kb on - strand, within AO353_02795at 592.400 kb on - strand, within AO353_02795at 592.400 kb on - strand, within AO353_02795at 592.400 kb on - strand, within AO353_02795at 592.400 kb on - strand, within AO353_02795at 592.400 kb on - strand, within AO353_02795at 592.426 kb on + strand, within AO353_02795at 592.426 kb on + strand, within AO353_02795at 592.426 kb on + strand, within AO353_02795at 592.426 kb on + strand, within AO353_02795at 592.426 kb on + strand, within AO353_02795at 592.426 kb on + strand, within AO353_02795at 592.426 kb on + strand, within AO353_02795at 592.426 kb on + strand, within AO353_02795at 592.426 kb on + strand, within AO353_02795at 592.426 kb on + strand, within AO353_02795at 592.426 kb on + strand, within AO353_02795at 592.427 kb on - strand, within AO353_02795at 592.427 kb on - strand, within AO353_02795at 592.427 kb on - strand, within AO353_02795at 592.427 kb on - strand, within AO353_02795at 592.427 kb on - strand, within AO353_02795at 592.427 kb on - strand, within AO353_02795at 592.427 kb on - strand, within AO353_02795at 592.427 kb on - strand, within AO353_02795at 592.427 kb on - strand, within AO353_02795at 592.427 kb on - strand, within AO353_02795at 592.456 kb on + strand, within AO353_02795at 592.457 kb on - strand, within AO353_02795at 592.457 kb on - strand, within AO353_02795at 592.492 kb on + strand, within AO353_02795at 592.492 kb on + strand, within AO353_02795at 592.493 kb on - strand, within AO353_02795at 592.493 kb on - strand, within AO353_02795at 592.493 kb on - strand, within AO353_02795at 592.528 kb on + strand, within AO353_02795at 592.528 kb on + strand, within AO353_02795at 592.529 kb on - strand, within AO353_02795at 592.669 kb on + strand, within AO353_02795at 592.688 kb on + strand, within AO353_02795at 592.689 kb on - strand, within AO353_02795at 592.689 kb on - strand, within AO353_02795at 592.874 kb on + strandat 592.875 kb on - strandat 592.875 kb on - strandat 592.875 kb on - strandat 592.875 kb on - strandat 592.875 kb on - strandat 592.875 kb on - strandat 592.882 kb on - strandat 592.882 kb on - strandat 592.912 kb on + strandat 592.913 kb on - strandat 592.955 kb on + strandat 592.997 kb on + strandat 592.997 kb on + strandat 592.997 kb on + strandat 592.998 kb on - strandat 592.998 kb on - strandat 593.055 kb on + strandat 593.055 kb on + strandat 593.055 kb on + strandat 593.055 kb on + strandat 593.056 kb on - strandat 593.402 kb on + strand, within AO353_02800at 593.402 kb on + strand, within AO353_02800at 593.402 kb on + strand, within AO353_02800at 593.402 kb on + strand, within AO353_02800at 593.402 kb on + strand, within AO353_02800at 593.402 kb on + strand, within AO353_02800at 593.403 kb on - strand, within AO353_02800at 593.403 kb on - strand, within AO353_02800at 593.403 kb on - strand, within AO353_02800at 593.403 kb on - strand, within AO353_02800at 593.403 kb on - strand, within AO353_02800at 593.403 kb on - strand, within AO353_02800at 593.529 kb on + strand, within AO353_02800at 593.530 kb on - strand, within AO353_02800at 593.561 kb on + strand, within AO353_02800at 593.561 kb on + strand, within AO353_02800at 593.562 kb on - strand, within AO353_02800at 593.562 kb on - strand, within AO353_02800at 593.562 kb on - strand, within AO353_02800at 593.645 kb on + strand, within AO353_02800at 593.645 kb on + strand, within AO353_02800at 593.645 kb on + strand, within AO353_02800at 593.645 kb on + strand, within AO353_02800at 593.645 kb on + strand, within AO353_02800at 593.645 kb on + strand, within AO353_02800at 593.646 kb on - strand, within AO353_02800at 593.646 kb on - strand, within AO353_02800at 593.646 kb on - strand, within AO353_02800at 593.646 kb on - strand, within AO353_02800at 593.646 kb on - strand, within AO353_02800at 593.693 kb on + strand, within AO353_02800at 593.816 kb on + strand, within AO353_02800at 593.914 kb on + strand, within AO353_02800at 593.966 kb on + strand, within AO353_02800at 593.966 kb on + strand, within AO353_02800at 593.966 kb on + strand, within AO353_02800at 593.966 kb on + strand, within AO353_02800at 593.966 kb on + strand, within AO353_02800at 593.966 kb on + strand, within AO353_02800at 593.966 kb on + strand, within AO353_02800at 593.966 kb on + strand, within AO353_02800at 593.966 kb on + strand, within AO353_02800at 593.967 kb on - strand, within AO353_02800at 593.967 kb on - strand, within AO353_02800at 593.967 kb on - strand, within AO353_02800at 593.967 kb on - strand, within AO353_02800at 593.967 kb on - strand, within AO353_02800at 593.967 kb on - strand, within AO353_02800at 593.967 kb on - strand, within AO353_02800at 593.967 kb on - strand, within AO353_02800at 593.967 kb on - strand, within AO353_02800at 593.967 kb on - strand, within AO353_02800at 593.967 kb on - strand, within AO353_02800at 593.967 kb on - strand, within AO353_02800at 593.967 kb on - strand, within AO353_02800at 593.967 kb on - strand, within AO353_02800at 594.086 kb on + strand, within AO353_02800at 594.086 kb on + strand, within AO353_02800at 594.087 kb on - strand, within AO353_02800at 594.087 kb on - strand, within AO353_02800at 594.087 kb on - strand, within AO353_02800at 594.087 kb on - strand, within AO353_02800at 594.087 kb on - strand, within AO353_02800at 594.087 kb on - strand, within AO353_02800at 594.245 kb on + strandat 594.248 kb on + strandat 594.248 kb on + strandat 594.248 kb on + strandat 594.248 kb on + strandat 594.249 kb on - strandat 594.249 kb on - strandat 594.249 kb on - strandat 594.249 kb on - strandat 594.297 kb on - strandat 594.308 kb on + strandat 594.308 kb on + strandat 594.308 kb on + strandat 594.309 kb on - strandat 594.309 kb on - strandat 594.309 kb on - strandat 594.309 kb on - strandat 594.309 kb on - strandat 594.309 kb on - strandat 594.309 kb on - strandat 594.332 kb on - strandat 594.387 kb on + strandat 594.387 kb on + strandat 594.387 kb on + strandat 594.387 kb on + strandat 594.387 kb on + strandat 594.387 kb on + strandat 594.387 kb on + strandat 594.388 kb on - strandat 594.388 kb on - strandat 594.587 kb on + strandat 594.678 kb on + strandat 594.678 kb on + strandat 594.678 kb on + strandat 594.679 kb on - strandat 594.679 kb on - strandat 594.679 kb on - strandat 594.679 kb on - strandat 594.679 kb on - strandat 594.733 kb on + strandat 594.734 kb on - strandat 594.862 kb on + strand, within AO353_02805at 594.863 kb on - strand, within AO353_02805at 594.966 kb on - strand, within AO353_02805at 594.966 kb on - strand, within AO353_02805at 594.968 kb on + strand, within AO353_02805at 594.968 kb on + strand, within AO353_02805at 594.968 kb on + strand, within AO353_02805at 594.973 kb on + strand, within AO353_02805at 594.973 kb on + strand, within AO353_02805at 594.973 kb on + strand, within AO353_02805at 594.974 kb on - strand, within AO353_02805at 594.974 kb on - strand, within AO353_02805at 594.974 kb on - strand, within AO353_02805at 594.974 kb on - strand, within AO353_02805at 594.974 kb on - strand, within AO353_02805at 594.975 kb on + strand, within AO353_02805at 594.975 kb on + strand, within AO353_02805at 594.976 kb on - strand, within AO353_02805at 594.976 kb on - strand, within AO353_02805at 594.976 kb on - strand, within AO353_02805at 594.976 kb on - strand, within AO353_02805at 594.980 kb on + strand, within AO353_02805at 594.980 kb on + strand, within AO353_02805at 594.980 kb on + strand, within AO353_02805at 594.980 kb on + strand, within AO353_02805at 594.980 kb on + strand, within AO353_02805at 594.981 kb on - strand, within AO353_02805at 594.981 kb on - strand, within AO353_02805at 594.981 kb on - strand, within AO353_02805at 594.981 kb on - strand, within AO353_02805at 594.981 kb on - strand, within AO353_02805at 595.163 kb on - strand, within AO353_02805at 595.190 kb on - strand, within AO353_02805at 595.190 kb on - strand, within AO353_02805at 595.290 kb on + strand, within AO353_02805at 595.290 kb on + strand, within AO353_02805at 595.290 kb on + strand, within AO353_02805at 595.291 kb on - strand, within AO353_02805at 595.291 kb on - strand, within AO353_02805at 595.291 kb on - strand, within AO353_02805

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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592,139 - AO353_02795 0.40 -0.7
592,141 + AO353_02795 0.40 -0.9
592,141 + AO353_02795 0.40 -0.6
592,142 - AO353_02795 0.40 -2.6
592,142 - AO353_02795 0.40 +1.3
592,142 - AO353_02795 0.40 -1.3
592,147 + AO353_02795 0.40 +0.7
592,147 + AO353_02795 0.40 +0.2
592,148 - AO353_02795 0.41 +0.5
592,148 - AO353_02795 0.41 +0.8
592,398 - AO353_02795 0.62 -0.7
592,399 + AO353_02795 0.62 -0.4
592,399 + AO353_02795 0.62 -0.7
592,399 + AO353_02795 0.62 +0.9
592,399 + AO353_02795 0.62 +0.1
592,399 + AO353_02795 0.62 +0.6
592,399 + AO353_02795 0.62 +0.4
592,400 - AO353_02795 0.62 +0.9
592,400 - AO353_02795 0.62 +1.0
592,400 - AO353_02795 0.62 -0.7
592,400 - AO353_02795 0.62 -1.0
592,400 - AO353_02795 0.62 -0.4
592,400 - AO353_02795 0.62 +0.2
592,400 - AO353_02795 0.62 +0.3
592,400 - AO353_02795 0.62 -0.8
592,426 + AO353_02795 0.64 -0.7
592,426 + AO353_02795 0.64 -1.7
592,426 + AO353_02795 0.64 -0.8
592,426 + AO353_02795 0.64 +1.3
592,426 + AO353_02795 0.64 +0.5
592,426 + AO353_02795 0.64 +3.3
592,426 + AO353_02795 0.64 -0.2
592,426 + AO353_02795 0.64 -1.0
592,426 + AO353_02795 0.64 -0.7
592,426 + AO353_02795 0.64 +0.2
592,426 + AO353_02795 0.64 -0.5
592,427 - AO353_02795 0.64 -0.7
592,427 - AO353_02795 0.64 -0.6
592,427 - AO353_02795 0.64 -1.0
592,427 - AO353_02795 0.64 -0.1
592,427 - AO353_02795 0.64 +0.8
592,427 - AO353_02795 0.64 -1.2
592,427 - AO353_02795 0.64 +1.1
592,427 - AO353_02795 0.64 -1.1
592,427 - AO353_02795 0.64 +0.8
592,427 - AO353_02795 0.64 -1.2
592,456 + AO353_02795 0.67 +0.6
592,457 - AO353_02795 0.67 -2.1
592,457 - AO353_02795 0.67 +0.8
592,492 + AO353_02795 0.70 -1.7
592,492 + AO353_02795 0.70 -1.0
592,493 - AO353_02795 0.70 +0.1
592,493 - AO353_02795 0.70 -0.8
592,493 - AO353_02795 0.70 -1.4
592,528 + AO353_02795 0.73 +0.9
592,528 + AO353_02795 0.73 -1.4
592,529 - AO353_02795 0.73 -0.9
592,669 + AO353_02795 0.85 -1.0
592,688 + AO353_02795 0.86 +0.2
592,689 - AO353_02795 0.86 +0.3
592,689 - AO353_02795 0.86 -2.3
592,874 + -1.0
592,875 - +0.3
592,875 - +1.3
592,875 - -0.8
592,875 - -1.0
592,875 - +1.4
592,875 - -0.8
592,882 - -2.1
592,882 - -2.2
592,912 + +0.3
592,913 - +0.1
592,955 + -0.5
592,997 + -1.0
592,997 + +0.4
592,997 + -0.3
592,998 - -1.2
592,998 - -1.9
593,055 + -0.3
593,055 + -0.9
593,055 + +0.7
593,055 + -0.6
593,056 - -0.2
593,402 + AO353_02800 0.30 -1.0
593,402 + AO353_02800 0.30 +1.0
593,402 + AO353_02800 0.30 +0.0
593,402 + AO353_02800 0.30 -1.2
593,402 + AO353_02800 0.30 +0.7
593,402 + AO353_02800 0.30 -1.2
593,403 - AO353_02800 0.30 -2.6
593,403 - AO353_02800 0.30 +0.2
593,403 - AO353_02800 0.30 -0.2
593,403 - AO353_02800 0.30 +0.2
593,403 - AO353_02800 0.30 -0.8
593,403 - AO353_02800 0.30 -1.7
593,529 + AO353_02800 0.40 -1.7
593,530 - AO353_02800 0.40 +1.4
593,561 + AO353_02800 0.42 -1.8
593,561 + AO353_02800 0.42 -1.4
593,562 - AO353_02800 0.42 -1.3
593,562 - AO353_02800 0.42 +0.5
593,562 - AO353_02800 0.42 -1.8
593,645 + AO353_02800 0.49 +0.8
593,645 + AO353_02800 0.49 -1.7
593,645 + AO353_02800 0.49 -0.9
593,645 + AO353_02800 0.49 -0.8
593,645 + AO353_02800 0.49 -0.7
593,645 + AO353_02800 0.49 +0.1
593,646 - AO353_02800 0.49 -0.6
593,646 - AO353_02800 0.49 -0.4
593,646 - AO353_02800 0.49 +0.4
593,646 - AO353_02800 0.49 -2.0
593,646 - AO353_02800 0.49 +1.4
593,693 + AO353_02800 0.52 -0.9
593,816 + AO353_02800 0.61 +0.4
593,914 + AO353_02800 0.69 -1.8
593,966 + AO353_02800 0.73 +2.0
593,966 + AO353_02800 0.73 -1.2
593,966 + AO353_02800 0.73 +0.8
593,966 + AO353_02800 0.73 +0.2
593,966 + AO353_02800 0.73 -0.5
593,966 + AO353_02800 0.73 -0.6
593,966 + AO353_02800 0.73 -0.2
593,966 + AO353_02800 0.73 -0.2
593,966 + AO353_02800 0.73 +0.1
593,967 - AO353_02800 0.73 -1.0
593,967 - AO353_02800 0.73 -1.0
593,967 - AO353_02800 0.73 +0.0
593,967 - AO353_02800 0.73 -0.7
593,967 - AO353_02800 0.73 -0.0
593,967 - AO353_02800 0.73 -2.1
593,967 - AO353_02800 0.73 +0.1
593,967 - AO353_02800 0.73 -0.5
593,967 - AO353_02800 0.73 -0.7
593,967 - AO353_02800 0.73 -0.6
593,967 - AO353_02800 0.73 +0.6
593,967 - AO353_02800 0.73 -2.9
593,967 - AO353_02800 0.73 -0.8
593,967 - AO353_02800 0.73 -1.2
594,086 + AO353_02800 0.82 -0.8
594,086 + AO353_02800 0.82 +0.4
594,087 - AO353_02800 0.82 -0.5
594,087 - AO353_02800 0.82 +1.0
594,087 - AO353_02800 0.82 +0.0
594,087 - AO353_02800 0.82 +0.5
594,087 - AO353_02800 0.82 -1.2
594,087 - AO353_02800 0.82 -1.8
594,245 + -0.6
594,248 + +0.8
594,248 + -1.9
594,248 + +1.2
594,248 + -0.8
594,249 - +0.2
594,249 - -0.2
594,249 - -0.6
594,249 - +0.3
594,297 - -0.7
594,308 + -0.7
594,308 + +0.5
594,308 + +0.4
594,309 - -2.0
594,309 - +1.1
594,309 - -1.8
594,309 - -0.0
594,309 - +0.1
594,309 - -0.3
594,309 - +1.5
594,332 - -0.0
594,387 + +0.4
594,387 + +0.4
594,387 + -2.5
594,387 + +1.2
594,387 + -0.0
594,387 + -0.2
594,387 + +1.8
594,388 - +1.3
594,388 - +0.2
594,587 + -0.6
594,678 + +0.6
594,678 + +1.0
594,678 + -0.7
594,679 - +1.5
594,679 - +0.5
594,679 - +1.8
594,679 - -2.4
594,679 - +0.3
594,733 + -2.8
594,734 - +1.0
594,862 + AO353_02805 0.20 +0.3
594,863 - AO353_02805 0.20 +1.0
594,966 - AO353_02805 0.30 -1.6
594,966 - AO353_02805 0.30 +1.1
594,968 + AO353_02805 0.30 -0.8
594,968 + AO353_02805 0.30 -1.4
594,968 + AO353_02805 0.30 +0.3
594,973 + AO353_02805 0.31 +0.3
594,973 + AO353_02805 0.31 -1.7
594,973 + AO353_02805 0.31 -0.1
594,974 - AO353_02805 0.31 -2.2
594,974 - AO353_02805 0.31 +0.1
594,974 - AO353_02805 0.31 +0.8
594,974 - AO353_02805 0.31 +0.4
594,974 - AO353_02805 0.31 +1.1
594,975 + AO353_02805 0.31 +1.0
594,975 + AO353_02805 0.31 -0.6
594,976 - AO353_02805 0.31 -0.0
594,976 - AO353_02805 0.31 +0.2
594,976 - AO353_02805 0.31 -0.5
594,976 - AO353_02805 0.31 +0.6
594,980 + AO353_02805 0.31 +0.5
594,980 + AO353_02805 0.31 +0.7
594,980 + AO353_02805 0.31 +0.7
594,980 + AO353_02805 0.31 +0.1
594,980 + AO353_02805 0.31 +0.0
594,981 - AO353_02805 0.31 +0.3
594,981 - AO353_02805 0.31 +1.0
594,981 - AO353_02805 0.31 +1.1
594,981 - AO353_02805 0.31 -0.2
594,981 - AO353_02805 0.31 -1.5
595,163 - AO353_02805 0.50 -0.3
595,190 - AO353_02805 0.52 -1.7
595,190 - AO353_02805 0.52 +0.9
595,290 + AO353_02805 0.62 -1.7
595,290 + AO353_02805 0.62 +0.6
595,290 + AO353_02805 0.62 +0.8
595,291 - AO353_02805 0.62 -2.6
595,291 - AO353_02805 0.62 -1.1
595,291 - AO353_02805 0.62 +0.5

Or see this region's nucleotide sequence