Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02775

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02765 and AO353_02770 are separated by 1 nucleotidesAO353_02770 and AO353_02775 are separated by 111 nucleotidesAO353_02775 and AO353_02780 are separated by 67 nucleotides AO353_02765: AO353_02765 - NAD(P)H-quinone oxidoreductase, at 587,133 to 587,729 _02765 AO353_02770: AO353_02770 - hypothetical protein, at 587,731 to 588,156 _02770 AO353_02775: AO353_02775 - 3-methyladenine DNA glycosylase, at 588,268 to 588,939 _02775 AO353_02780: AO353_02780 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 589,007 to 589,831 _02780 Position (kb) 588 589Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 587.314 kb on - strand, within AO353_02765at 587.400 kb on + strand, within AO353_02765at 587.400 kb on + strand, within AO353_02765at 587.400 kb on + strand, within AO353_02765at 587.401 kb on - strand, within AO353_02765at 587.401 kb on - strand, within AO353_02765at 587.401 kb on - strand, within AO353_02765at 587.566 kb on - strand, within AO353_02765at 587.815 kb on + strand, within AO353_02770at 587.815 kb on + strand, within AO353_02770at 587.815 kb on + strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.835 kb on - strand, within AO353_02770at 587.835 kb on - strand, within AO353_02770at 587.845 kb on + strand, within AO353_02770at 587.845 kb on + strand, within AO353_02770at 587.845 kb on + strand, within AO353_02770at 587.845 kb on + strand, within AO353_02770at 587.845 kb on + strand, within AO353_02770at 587.846 kb on - strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.849 kb on - strand, within AO353_02770at 587.849 kb on - strand, within AO353_02770at 587.849 kb on - strand, within AO353_02770at 587.849 kb on - strand, within AO353_02770at 587.849 kb on - strand, within AO353_02770at 587.989 kb on + strand, within AO353_02770at 587.989 kb on + strand, within AO353_02770at 587.989 kb on + strand, within AO353_02770at 587.989 kb on + strand, within AO353_02770at 587.989 kb on + strand, within AO353_02770at 587.990 kb on - strand, within AO353_02770at 587.990 kb on - strand, within AO353_02770at 587.990 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.120 kb on + strandat 588.120 kb on + strandat 588.120 kb on + strandat 588.120 kb on + strandat 588.121 kb on - strandat 588.121 kb on - strandat 588.121 kb on - strandat 588.181 kb on + strandat 588.181 kb on + strandat 588.182 kb on - strandat 588.200 kb on + strandat 588.215 kb on + strandat 588.223 kb on - strandat 588.230 kb on + strandat 588.230 kb on + strandat 588.231 kb on - strandat 588.231 kb on - strandat 588.284 kb on + strandat 588.284 kb on + strandat 588.284 kb on + strandat 588.284 kb on + strandat 588.284 kb on + strandat 588.285 kb on - strandat 588.302 kb on - strandat 588.431 kb on + strand, within AO353_02775at 588.431 kb on + strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.518 kb on + strand, within AO353_02775at 588.518 kb on + strand, within AO353_02775at 588.518 kb on + strand, within AO353_02775at 588.518 kb on + strand, within AO353_02775at 588.519 kb on - strand, within AO353_02775at 588.815 kb on + strand, within AO353_02775at 588.911 kb on + strandat 588.912 kb on - strandat 588.912 kb on - strandat 588.912 kb on - strandat 588.912 kb on - strandat 588.929 kb on + strandat 588.930 kb on - strandat 588.930 kb on - strandat 588.930 kb on - strandat 588.930 kb on - strandat 588.962 kb on - strandat 589.258 kb on - strand, within AO353_02780at 589.280 kb on - strand, within AO353_02780at 589.284 kb on + strand, within AO353_02780at 589.284 kb on + strand, within AO353_02780at 589.284 kb on + strand, within AO353_02780at 589.284 kb on + strand, within AO353_02780at 589.284 kb on + strand, within AO353_02780at 589.284 kb on + strand, within AO353_02780at 589.285 kb on - strand, within AO353_02780at 589.304 kb on + strand, within AO353_02780at 589.304 kb on + strand, within AO353_02780at 589.304 kb on + strand, within AO353_02780at 589.304 kb on + strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.310 kb on - strand, within AO353_02780at 589.362 kb on + strand, within AO353_02780at 589.362 kb on + strand, within AO353_02780at 589.362 kb on + strand, within AO353_02780at 589.362 kb on + strand, within AO353_02780at 589.363 kb on - strand, within AO353_02780at 589.363 kb on - strand, within AO353_02780at 589.363 kb on - strand, within AO353_02780at 589.452 kb on + strand, within AO353_02780at 589.452 kb on + strand, within AO353_02780at 589.452 kb on + strand, within AO353_02780at 589.452 kb on + strand, within AO353_02780at 589.452 kb on + strand, within AO353_02780at 589.452 kb on + strand, within AO353_02780at 589.453 kb on - strand, within AO353_02780at 589.453 kb on - strand, within AO353_02780at 589.453 kb on - strand, within AO353_02780at 589.453 kb on - strand, within AO353_02780at 589.453 kb on - strand, within AO353_02780at 589.453 kb on - strand, within AO353_02780at 589.453 kb on - strand, within AO353_02780at 589.530 kb on + strand, within AO353_02780at 589.530 kb on + strand, within AO353_02780at 589.530 kb on + strand, within AO353_02780at 589.530 kb on + strand, within AO353_02780at 589.531 kb on - strand, within AO353_02780at 589.531 kb on - strand, within AO353_02780at 589.531 kb on - strand, within AO353_02780at 589.531 kb on - strand, within AO353_02780at 589.531 kb on - strand, within AO353_02780at 589.531 kb on - strand, within AO353_02780at 589.531 kb on - strand, within AO353_02780at 589.555 kb on - strand, within AO353_02780at 589.555 kb on - strand, within AO353_02780at 589.578 kb on + strand, within AO353_02780at 589.579 kb on - strand, within AO353_02780at 589.579 kb on - strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strandat 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.755 kb on + strandat 589.755 kb on + strandat 589.755 kb on + strandat 589.755 kb on + strandat 589.756 kb on - strandat 589.788 kb on - strandat 589.873 kb on + strandat 589.873 kb on + strandat 589.932 kb on + strandat 589.932 kb on + strandat 589.932 kb on + strandat 589.932 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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587,314 - AO353_02765 0.30 +0.4
587,400 + AO353_02765 0.45 +1.3
587,400 + AO353_02765 0.45 +0.2
587,400 + AO353_02765 0.45 +0.8
587,401 - AO353_02765 0.45 +1.4
587,401 - AO353_02765 0.45 -1.2
587,401 - AO353_02765 0.45 +0.4
587,566 - AO353_02765 0.73 +0.3
587,815 + AO353_02770 0.20 -0.6
587,815 + AO353_02770 0.20 -0.5
587,815 + AO353_02770 0.20 -0.8
587,816 - AO353_02770 0.20 +1.2
587,816 - AO353_02770 0.20 -2.0
587,816 - AO353_02770 0.20 +0.9
587,816 - AO353_02770 0.20 +0.4
587,816 - AO353_02770 0.20 -1.0
587,816 - AO353_02770 0.20 +0.8
587,835 - AO353_02770 0.24 -0.7
587,835 - AO353_02770 0.24 -0.2
587,845 + AO353_02770 0.27 +0.8
587,845 + AO353_02770 0.27 -0.3
587,845 + AO353_02770 0.27 -0.9
587,845 + AO353_02770 0.27 +0.1
587,845 + AO353_02770 0.27 -0.6
587,846 - AO353_02770 0.27 -1.1
587,848 + AO353_02770 0.27 -0.7
587,848 + AO353_02770 0.27 +0.2
587,848 + AO353_02770 0.27 -1.4
587,848 + AO353_02770 0.27 -1.0
587,848 + AO353_02770 0.27 +0.4
587,848 + AO353_02770 0.27 +0.6
587,849 - AO353_02770 0.28 -0.2
587,849 - AO353_02770 0.28 +1.0
587,849 - AO353_02770 0.28 +0.9
587,849 - AO353_02770 0.28 -0.1
587,849 - AO353_02770 0.28 +0.5
587,989 + AO353_02770 0.61 +1.3
587,989 + AO353_02770 0.61 +0.8
587,989 + AO353_02770 0.61 -0.6
587,989 + AO353_02770 0.61 +0.1
587,989 + AO353_02770 0.61 -0.1
587,990 - AO353_02770 0.61 -0.2
587,990 - AO353_02770 0.61 +1.0
587,990 - AO353_02770 0.61 -0.3
588,092 - AO353_02770 0.85 -1.2
588,092 - AO353_02770 0.85 +1.3
588,092 - AO353_02770 0.85 -0.6
588,092 - AO353_02770 0.85 -1.3
588,092 - AO353_02770 0.85 +0.2
588,092 - AO353_02770 0.85 -0.2
588,092 - AO353_02770 0.85 +1.0
588,092 - AO353_02770 0.85 +0.5
588,092 - AO353_02770 0.85 +1.8
588,092 - AO353_02770 0.85 -0.1
588,092 - AO353_02770 0.85 +1.2
588,120 + +1.2
588,120 + +1.8
588,120 + +1.2
588,120 + +0.8
588,121 - -0.6
588,121 - -1.4
588,121 - -2.2
588,181 + +0.2
588,181 + +1.5
588,182 - -0.3
588,200 + -1.0
588,215 + -0.1
588,223 - +1.3
588,230 + -0.4
588,230 + -0.8
588,231 - +1.5
588,231 - +0.2
588,284 + +0.3
588,284 + -0.2
588,284 + +0.2
588,284 + -1.7
588,284 + -0.6
588,285 - -0.5
588,302 - +0.8
588,431 + AO353_02775 0.24 +0.5
588,431 + AO353_02775 0.24 +0.0
588,432 - AO353_02775 0.24 -1.3
588,432 - AO353_02775 0.24 -0.4
588,432 - AO353_02775 0.24 -0.2
588,432 - AO353_02775 0.24 -2.0
588,432 - AO353_02775 0.24 +1.2
588,432 - AO353_02775 0.24 +0.6
588,518 + AO353_02775 0.37 -1.0
588,518 + AO353_02775 0.37 -1.8
588,518 + AO353_02775 0.37 +0.3
588,518 + AO353_02775 0.37 -1.0
588,519 - AO353_02775 0.37 -0.6
588,815 + AO353_02775 0.81 +0.2
588,911 + +0.2
588,912 - -0.9
588,912 - +0.6
588,912 - +1.6
588,912 - -0.4
588,929 + +0.2
588,930 - -0.2
588,930 - +0.2
588,930 - +0.4
588,930 - -0.2
588,962 - -0.2
589,258 - AO353_02780 0.30 -0.9
589,280 - AO353_02780 0.33 -0.4
589,284 + AO353_02780 0.34 -0.6
589,284 + AO353_02780 0.34 +0.6
589,284 + AO353_02780 0.34 -0.5
589,284 + AO353_02780 0.34 +2.8
589,284 + AO353_02780 0.34 +0.6
589,284 + AO353_02780 0.34 -0.5
589,285 - AO353_02780 0.34 -2.5
589,304 + AO353_02780 0.36 -1.5
589,304 + AO353_02780 0.36 -1.9
589,304 + AO353_02780 0.36 +0.2
589,304 + AO353_02780 0.36 +0.2
589,305 - AO353_02780 0.36 -1.4
589,305 - AO353_02780 0.36 +0.3
589,305 - AO353_02780 0.36 -0.2
589,305 - AO353_02780 0.36 -1.2
589,305 - AO353_02780 0.36 -0.6
589,305 - AO353_02780 0.36 -1.8
589,305 - AO353_02780 0.36 -1.8
589,305 - AO353_02780 0.36 -0.6
589,305 - AO353_02780 0.36 -0.2
589,310 - AO353_02780 0.37 -1.1
589,362 + AO353_02780 0.43 -0.9
589,362 + AO353_02780 0.43 -1.6
589,362 + AO353_02780 0.43 -0.5
589,362 + AO353_02780 0.43 -0.6
589,363 - AO353_02780 0.43 -1.7
589,363 - AO353_02780 0.43 -0.6
589,363 - AO353_02780 0.43 +2.8
589,452 + AO353_02780 0.54 +0.5
589,452 + AO353_02780 0.54 -0.7
589,452 + AO353_02780 0.54 -0.7
589,452 + AO353_02780 0.54 -1.8
589,452 + AO353_02780 0.54 -2.0
589,452 + AO353_02780 0.54 -1.1
589,453 - AO353_02780 0.54 -1.0
589,453 - AO353_02780 0.54 -2.5
589,453 - AO353_02780 0.54 -1.8
589,453 - AO353_02780 0.54 +0.2
589,453 - AO353_02780 0.54 -0.4
589,453 - AO353_02780 0.54 +0.5
589,453 - AO353_02780 0.54 -0.9
589,530 + AO353_02780 0.63 -0.6
589,530 + AO353_02780 0.63 +0.8
589,530 + AO353_02780 0.63 -0.2
589,530 + AO353_02780 0.63 -2.0
589,531 - AO353_02780 0.64 -0.6
589,531 - AO353_02780 0.64 -0.2
589,531 - AO353_02780 0.64 -0.8
589,531 - AO353_02780 0.64 -0.4
589,531 - AO353_02780 0.64 +0.5
589,531 - AO353_02780 0.64 -0.0
589,531 - AO353_02780 0.64 +0.2
589,555 - AO353_02780 0.66 +0.2
589,555 - AO353_02780 0.66 -0.6
589,578 + AO353_02780 0.69 -2.6
589,579 - AO353_02780 0.69 +0.4
589,579 - AO353_02780 0.69 -2.3
589,695 + AO353_02780 0.83 -1.6
589,695 + AO353_02780 0.83 -2.0
589,695 + AO353_02780 0.83 +0.1
589,695 + AO353_02780 0.83 -3.0
589,695 + AO353_02780 0.83 -0.2
589,695 + AO353_02780 0.83 -1.8
589,695 + AO353_02780 0.83 -0.7
589,695 + AO353_02780 0.83 -2.4
589,695 + AO353_02780 0.83 -2.7
589,695 + AO353_02780 0.83 -2.2
589,696 - AO353_02780 0.84 -1.9
589,696 - AO353_02780 0.84 -0.6
589,696 - AO353_02780 0.84 +2.2
589,696 - AO353_02780 0.84 +0.6
589,696 - -0.8
589,696 - AO353_02780 0.84 -2.6
589,696 - AO353_02780 0.84 +0.1
589,696 - AO353_02780 0.84 -0.2
589,696 - AO353_02780 0.84 +0.4
589,696 - AO353_02780 0.84 -0.7
589,696 - AO353_02780 0.84 +1.1
589,755 + -2.3
589,755 + -2.7
589,755 + -0.6
589,755 + -0.1
589,756 - +0.0
589,788 - -0.4
589,873 + -1.7
589,873 + -0.7
589,932 + +0.2
589,932 + -2.3
589,932 + -0.0
589,932 + -1.2

Or see this region's nucleotide sequence