Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02430

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02425 and AO353_02430 are separated by 40 nucleotidesAO353_02430 and AO353_02435 are separated by 40 nucleotides AO353_02425: AO353_02425 - spermidine/putrescine ABC transporter ATP-binding protein, at 516,460 to 517,464 _02425 AO353_02430: AO353_02430 - HAD family hydrolase, at 517,505 to 518,158 _02430 AO353_02435: AO353_02435 - NAD(P)H-quinone oxidoreductase, at 518,199 to 519,161 _02435 Position (kb) 517 518 519Strain fitness (log2 ratio) -2 -1 0 1 2at 516.724 kb on + strand, within AO353_02425at 516.724 kb on + strand, within AO353_02425at 516.724 kb on + strand, within AO353_02425at 516.724 kb on + strand, within AO353_02425at 516.724 kb on + strand, within AO353_02425at 516.725 kb on - strand, within AO353_02425at 516.725 kb on - strand, within AO353_02425at 516.725 kb on - strand, within AO353_02425at 517.138 kb on + strand, within AO353_02425at 517.138 kb on + strand, within AO353_02425at 517.138 kb on + strand, within AO353_02425at 517.139 kb on - strand, within AO353_02425at 517.139 kb on - strand, within AO353_02425at 517.139 kb on - strand, within AO353_02425at 517.139 kb on - strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.457 kb on + strandat 517.457 kb on + strandat 517.458 kb on - strandat 517.487 kb on - strandat 517.644 kb on - strand, within AO353_02430at 517.644 kb on - strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.902 kb on + strand, within AO353_02430at 517.902 kb on + strand, within AO353_02430at 517.902 kb on + strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.928 kb on + strand, within AO353_02430at 517.928 kb on + strand, within AO353_02430at 517.928 kb on + strand, within AO353_02430at 517.929 kb on - strand, within AO353_02430at 517.958 kb on + strand, within AO353_02430at 517.959 kb on - strand, within AO353_02430at 518.033 kb on + strand, within AO353_02430at 518.034 kb on - strand, within AO353_02430at 518.034 kb on - strand, within AO353_02430at 518.197 kb on - strandat 518.512 kb on - strand, within AO353_02435at 518.512 kb on - strand, within AO353_02435at 518.533 kb on + strand, within AO353_02435at 518.533 kb on + strand, within AO353_02435at 518.533 kb on + strand, within AO353_02435at 518.533 kb on + strand, within AO353_02435at 518.533 kb on + strand, within AO353_02435at 518.533 kb on + strand, within AO353_02435at 518.533 kb on + strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.641 kb on + strand, within AO353_02435at 518.642 kb on - strand, within AO353_02435at 518.700 kb on + strand, within AO353_02435at 518.700 kb on + strand, within AO353_02435at 518.700 kb on + strand, within AO353_02435at 518.700 kb on + strand, within AO353_02435at 518.700 kb on + strand, within AO353_02435at 518.700 kb on + strand, within AO353_02435at 518.700 kb on + strand, within AO353_02435at 518.701 kb on - strand, within AO353_02435at 518.701 kb on - strand, within AO353_02435at 518.701 kb on - strand, within AO353_02435at 518.806 kb on + strand, within AO353_02435at 518.806 kb on + strand, within AO353_02435at 518.806 kb on + strand, within AO353_02435at 518.807 kb on - strand, within AO353_02435at 518.807 kb on - strand, within AO353_02435at 518.807 kb on - strand, within AO353_02435at 518.807 kb on - strand, within AO353_02435at 518.807 kb on - strand, within AO353_02435at 518.862 kb on + strand, within AO353_02435at 518.862 kb on + strand, within AO353_02435at 518.862 kb on + strand, within AO353_02435at 518.863 kb on - strand, within AO353_02435at 518.863 kb on - strand, within AO353_02435at 518.863 kb on - strand, within AO353_02435at 518.863 kb on - strand, within AO353_02435at 519.093 kb on + strandat 519.093 kb on + strandat 519.094 kb on - strandat 519.094 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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516,724 + AO353_02425 0.26 -0.8
516,724 + AO353_02425 0.26 +0.9
516,724 + AO353_02425 0.26 -0.2
516,724 + AO353_02425 0.26 +0.2
516,724 + AO353_02425 0.26 -2.3
516,725 - AO353_02425 0.26 -0.5
516,725 - AO353_02425 0.26 -0.8
516,725 - AO353_02425 0.26 -0.3
517,138 + AO353_02425 0.67 +1.0
517,138 + AO353_02425 0.67 -0.3
517,138 + AO353_02425 0.67 -1.1
517,139 - AO353_02425 0.68 +0.2
517,139 - AO353_02425 0.68 -2.7
517,139 - AO353_02425 0.68 -0.8
517,139 - AO353_02425 0.68 -1.1
517,183 + AO353_02425 0.72 -1.3
517,183 + AO353_02425 0.72 -0.1
517,183 + AO353_02425 0.72 -0.4
517,183 + AO353_02425 0.72 -2.0
517,183 + AO353_02425 0.72 +2.2
517,183 + AO353_02425 0.72 -2.1
517,184 - AO353_02425 0.72 -1.1
517,184 - AO353_02425 0.72 +0.9
517,184 - AO353_02425 0.72 +1.4
517,184 - AO353_02425 0.72 -0.1
517,184 - AO353_02425 0.72 +1.4
517,184 - AO353_02425 0.72 -1.5
517,184 - AO353_02425 0.72 +0.2
517,457 + -1.4
517,457 + -2.1
517,458 - -1.0
517,487 - -0.4
517,644 - AO353_02430 0.21 -0.2
517,644 - AO353_02430 0.21 -1.2
517,673 + AO353_02430 0.26 +0.8
517,673 + AO353_02430 0.26 +0.1
517,673 + AO353_02430 0.26 -0.5
517,673 + AO353_02430 0.26 +0.9
517,673 + AO353_02430 0.26 +0.0
517,673 + AO353_02430 0.26 -1.4
517,673 + AO353_02430 0.26 -1.4
517,674 - AO353_02430 0.26 +1.2
517,674 - AO353_02430 0.26 -2.3
517,674 - AO353_02430 0.26 +0.3
517,674 - AO353_02430 0.26 -1.7
517,674 - AO353_02430 0.26 -0.1
517,674 - AO353_02430 0.26 +1.2
517,674 - AO353_02430 0.26 -1.4
517,674 - AO353_02430 0.26 +0.7
517,674 - AO353_02430 0.26 +0.6
517,674 - AO353_02430 0.26 -1.6
517,674 - AO353_02430 0.26 -0.6
517,674 - AO353_02430 0.26 -1.7
517,674 - AO353_02430 0.26 +0.2
517,674 - AO353_02430 0.26 +1.5
517,674 - AO353_02430 0.26 +0.0
517,902 + AO353_02430 0.61 +0.3
517,902 + AO353_02430 0.61 -0.7
517,902 + AO353_02430 0.61 -0.6
517,903 - AO353_02430 0.61 -0.6
517,903 - AO353_02430 0.61 -1.1
517,903 - AO353_02430 0.61 +0.7
517,903 - AO353_02430 0.61 +1.7
517,903 - AO353_02430 0.61 -1.8
517,903 - AO353_02430 0.61 -1.7
517,903 - AO353_02430 0.61 +0.2
517,903 - AO353_02430 0.61 +0.2
517,903 - AO353_02430 0.61 -1.0
517,928 + AO353_02430 0.65 +0.2
517,928 + AO353_02430 0.65 -0.4
517,928 + AO353_02430 0.65 +0.9
517,929 - AO353_02430 0.65 -2.2
517,958 + AO353_02430 0.69 -2.1
517,959 - AO353_02430 0.69 +2.3
518,033 + AO353_02430 0.81 -2.2
518,034 - AO353_02430 0.81 -0.2
518,034 - AO353_02430 0.81 +0.6
518,197 - +0.5
518,512 - AO353_02435 0.33 +0.4
518,512 - AO353_02435 0.33 -0.6
518,533 + AO353_02435 0.35 -2.0
518,533 + AO353_02435 0.35 +1.4
518,533 + AO353_02435 0.35 -1.6
518,533 + AO353_02435 0.35 -1.0
518,533 + AO353_02435 0.35 -0.6
518,533 + AO353_02435 0.35 -2.3
518,533 + AO353_02435 0.35 +0.4
518,534 - AO353_02435 0.35 +1.4
518,534 - AO353_02435 0.35 -1.3
518,534 - AO353_02435 0.35 +0.6
518,534 - AO353_02435 0.35 -1.1
518,534 - AO353_02435 0.35 +0.1
518,534 - AO353_02435 0.35 +0.4
518,534 - AO353_02435 0.35 -2.0
518,534 - AO353_02435 0.35 +1.0
518,534 - AO353_02435 0.35 -0.8
518,534 - AO353_02435 0.35 -0.7
518,534 - AO353_02435 0.35 +0.2
518,641 + AO353_02435 0.46 -2.1
518,642 - AO353_02435 0.46 -0.3
518,700 + AO353_02435 0.52 +0.2
518,700 + AO353_02435 0.52 -1.8
518,700 + AO353_02435 0.52 -2.2
518,700 + AO353_02435 0.52 -0.7
518,700 + AO353_02435 0.52 -0.2
518,700 + AO353_02435 0.52 -1.5
518,700 + AO353_02435 0.52 +1.7
518,701 - AO353_02435 0.52 +0.5
518,701 - AO353_02435 0.52 -0.1
518,701 - AO353_02435 0.52 -0.4
518,806 + AO353_02435 0.63 -0.6
518,806 + AO353_02435 0.63 -0.3
518,806 + AO353_02435 0.63 +0.3
518,807 - AO353_02435 0.63 +0.2
518,807 - AO353_02435 0.63 +0.3
518,807 - AO353_02435 0.63 -0.1
518,807 - AO353_02435 0.63 -1.3
518,807 - AO353_02435 0.63 +0.3
518,862 + AO353_02435 0.69 +0.5
518,862 + AO353_02435 0.69 +0.2
518,862 + AO353_02435 0.69 +1.5
518,863 - AO353_02435 0.69 -0.1
518,863 - AO353_02435 0.69 +1.7
518,863 - AO353_02435 0.69 +1.7
518,863 - AO353_02435 0.69 -1.9
519,093 + +1.6
519,093 + +0.6
519,094 - +0.4
519,094 - -0.8

Or see this region's nucleotide sequence