Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00905 and AO353_00910 are separated by 270 nucleotides AO353_00910 and AO353_00915 are separated by 5 nucleotides AO353_00915 and AO353_00920 overlap by 1 nucleotides
AO353_00905: AO353_00905 - GntR family transcriptional regulator, at 206,239 to 206,961
_00905
AO353_00910: AO353_00910 - ATP-dependent zinc protease, at 207,232 to 207,771
_00910
AO353_00915: AO353_00915 - hypothetical protein, at 207,777 to 209,309
_00915
AO353_00920: AO353_00920 - alpha-L-glutamate ligase, at 209,309 to 210,295
_00920
Position (kb) 207
208
209
210 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 206.814 kb on - strand, within AO353_00905 at 207.054 kb on + strand at 207.067 kb on + strand at 207.067 kb on + strand at 207.068 kb on - strand at 207.068 kb on - strand at 207.075 kb on - strand at 207.078 kb on + strand at 207.079 kb on - strand at 207.079 kb on - strand at 207.106 kb on - strand at 207.106 kb on - strand at 207.119 kb on + strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.153 kb on - strand at 207.164 kb on + strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.231 kb on + strand at 207.231 kb on + strand at 207.231 kb on + strand at 207.231 kb on + strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.266 kb on + strand at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.314 kb on - strand, within AO353_00910 at 207.328 kb on + strand, within AO353_00910 at 207.328 kb on + strand, within AO353_00910 at 207.411 kb on + strand, within AO353_00910 at 207.455 kb on - strand, within AO353_00910 at 207.562 kb on + strand, within AO353_00910 at 207.562 kb on + strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.591 kb on + strand, within AO353_00910 at 207.592 kb on - strand, within AO353_00910 at 207.620 kb on + strand, within AO353_00910 at 207.620 kb on + strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.718 kb on - strand at 207.718 kb on - strand at 207.718 kb on - strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.722 kb on - strand at 207.722 kb on - strand at 207.722 kb on - strand at 207.722 kb on - strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.770 kb on - strand at 207.770 kb on - strand at 207.817 kb on + strand at 207.849 kb on + strand at 207.990 kb on + strand, within AO353_00915 at 207.991 kb on - strand, within AO353_00915 at 207.991 kb on - strand, within AO353_00915 at 208.013 kb on + strand, within AO353_00915 at 208.013 kb on + strand, within AO353_00915 at 208.013 kb on + strand, within AO353_00915 at 208.014 kb on - strand, within AO353_00915 at 208.014 kb on - strand, within AO353_00915 at 208.014 kb on - strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.108 kb on - strand, within AO353_00915 at 208.108 kb on - strand, within AO353_00915 at 208.134 kb on + strand, within AO353_00915 at 208.134 kb on + strand, within AO353_00915 at 208.390 kb on + strand, within AO353_00915 at 208.390 kb on + strand, within AO353_00915 at 208.390 kb on + strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.461 kb on - strand, within AO353_00915 at 208.461 kb on - strand, within AO353_00915 at 208.485 kb on + strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.655 kb on + strand, within AO353_00915 at 208.655 kb on + strand, within AO353_00915 at 208.677 kb on + strand, within AO353_00915 at 208.687 kb on - strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.857 kb on - strand, within AO353_00915 at 208.866 kb on - strand, within AO353_00915 at 208.902 kb on + strand, within AO353_00915 at 208.902 kb on + strand, within AO353_00915 at 208.903 kb on - strand, within AO353_00915 at 208.903 kb on - strand, within AO353_00915 at 208.903 kb on - strand, within AO353_00915 at 208.997 kb on + strand, within AO353_00915 at 208.998 kb on - strand, within AO353_00915 at 209.126 kb on + strand, within AO353_00915 at 209.126 kb on + strand, within AO353_00915 at 209.126 kb on + strand, within AO353_00915 at 209.181 kb on + strand at 209.181 kb on + strand at 209.307 kb on + strand at 209.308 kb on - strand at 209.384 kb on + strand at 209.384 kb on + strand at 209.384 kb on + strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.396 kb on + strand at 209.396 kb on + strand at 209.396 kb on + strand at 209.397 kb on - strand at 209.397 kb on - strand at 209.397 kb on - strand at 209.397 kb on - strand at 209.486 kb on + strand, within AO353_00920 at 209.545 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.700 kb on - strand, within AO353_00920 at 209.777 kb on + strand, within AO353_00920 at 209.777 kb on + strand, within AO353_00920 at 209.778 kb on - strand, within AO353_00920 at 209.778 kb on - strand, within AO353_00920 at 209.986 kb on - strand, within AO353_00920 at 209.986 kb on - strand, within AO353_00920 at 210.005 kb on + strand, within AO353_00920 at 210.005 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.042 kb on - strand, within AO353_00920 at 210.042 kb on - strand, within AO353_00920 at 210.063 kb on - strand, within AO353_00920 at 210.063 kb on - strand, within AO353_00920 at 210.294 kb on - strand at 210.294 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 206,814 - AO353_00905 0.80 -0.3 207,054 + -0.7 207,067 + -1.9 207,067 + -2.2 207,068 - +0.3 207,068 - -0.8 207,075 - -0.6 207,078 + -1.6 207,079 - -0.6 207,079 - +1.5 207,106 - +1.4 207,106 - +0.2 207,119 + -1.0 207,120 - +1.5 207,120 - +1.0 207,120 - +0.7 207,120 - +1.4 207,120 - +1.7 207,120 - +0.2 207,153 - +1.7 207,164 + -1.7 207,165 - +1.3 207,165 - +1.4 207,165 - -0.1 207,165 - +1.5 207,165 - +0.2 207,165 - -0.2 207,165 - +0.7 207,231 + -1.5 207,231 + -1.6 207,231 + +0.6 207,231 + -0.9 207,232 - +1.7 207,232 - +0.6 207,232 - +2.1 207,232 - +1.5 207,232 - -0.5 207,232 - -1.4 207,266 + +0.3 207,313 + AO353_00910 0.15 +1.1 207,313 + AO353_00910 0.15 +1.5 207,313 + AO353_00910 0.15 +1.0 207,313 + AO353_00910 0.15 -0.1 207,313 + AO353_00910 0.15 +2.2 207,314 - AO353_00910 0.15 +2.6 207,328 + AO353_00910 0.18 +0.1 207,328 + AO353_00910 0.18 +0.3 207,411 + AO353_00910 0.33 +0.7 207,455 - AO353_00910 0.41 +2.2 207,562 + AO353_00910 0.61 +2.2 207,562 + AO353_00910 0.61 +0.2 207,563 - AO353_00910 0.61 +1.4 207,563 - AO353_00910 0.61 +0.9 207,563 - AO353_00910 0.61 +1.6 207,563 - AO353_00910 0.61 +0.5 207,563 - AO353_00910 0.61 +1.7 207,563 - AO353_00910 0.61 +1.6 207,591 + AO353_00910 0.66 -0.5 207,592 - AO353_00910 0.67 +1.0 207,620 + AO353_00910 0.72 +0.3 207,620 + AO353_00910 0.72 +0.2 207,621 - AO353_00910 0.72 -1.7 207,621 - AO353_00910 0.72 +1.5 207,621 - AO353_00910 0.72 +1.9 207,621 - AO353_00910 0.72 +1.2 207,621 - AO353_00910 0.72 +2.5 207,621 - AO353_00910 0.72 +0.6 207,621 - AO353_00910 0.72 +0.0 207,621 - AO353_00910 0.72 +1.3 207,621 - AO353_00910 0.72 +1.5 207,621 - AO353_00910 0.72 +2.4 207,621 - AO353_00910 0.72 -1.7 207,621 - AO353_00910 0.72 -1.7 207,717 + AO353_00910 0.90 +0.2 207,717 + AO353_00910 0.90 +0.9 207,717 + AO353_00910 0.90 +0.7 207,717 + AO353_00910 0.90 +0.7 207,717 + AO353_00910 0.90 -0.1 207,717 + AO353_00910 0.90 -0.3 207,717 + AO353_00910 0.90 +0.8 207,717 + AO353_00910 0.90 -1.4 207,718 - +0.7 207,718 - +0.6 207,718 - +1.5 207,721 + -0.8 207,721 + -0.6 207,721 + +0.9 207,721 + +1.7 207,721 + +0.9 207,721 + +2.7 207,722 - +0.2 207,722 - +0.6 207,722 - +1.4 207,722 - +1.1 207,769 + +1.7 207,769 + -0.6 207,769 + +1.5 207,769 + +2.3 207,769 + +0.6 207,769 + -1.4 207,770 - +1.5 207,770 - +1.7 207,817 + +0.2 207,849 + +2.4 207,990 + AO353_00915 0.14 +0.6 207,991 - AO353_00915 0.14 +0.5 207,991 - AO353_00915 0.14 +0.6 208,013 + AO353_00915 0.15 +1.7 208,013 + AO353_00915 0.15 +0.4 208,013 + AO353_00915 0.15 +1.6 208,014 - AO353_00915 0.15 -0.4 208,014 - AO353_00915 0.15 +0.9 208,014 - AO353_00915 0.15 +1.4 208,026 + AO353_00915 0.16 +0.6 208,026 + AO353_00915 0.16 +0.7 208,026 + AO353_00915 0.16 +1.5 208,026 + AO353_00915 0.16 +2.0 208,026 + AO353_00915 0.16 +1.7 208,026 + AO353_00915 0.16 +1.2 208,027 - AO353_00915 0.16 +1.7 208,027 - AO353_00915 0.16 +2.1 208,027 - AO353_00915 0.16 +1.4 208,027 - AO353_00915 0.16 +1.0 208,027 - AO353_00915 0.16 +1.7 208,027 - AO353_00915 0.16 +1.4 208,027 - AO353_00915 0.16 +0.4 208,027 - AO353_00915 0.16 +2.3 208,027 - AO353_00915 0.16 +1.3 208,027 - AO353_00915 0.16 +1.7 208,027 - AO353_00915 0.16 +1.2 208,027 - AO353_00915 0.16 +1.5 208,027 - AO353_00915 0.16 +1.7 208,107 + AO353_00915 0.22 +0.5 208,107 + AO353_00915 0.22 +0.5 208,107 + AO353_00915 0.22 +2.0 208,107 + AO353_00915 0.22 +2.1 208,108 - AO353_00915 0.22 +1.7 208,108 - AO353_00915 0.22 +1.4 208,134 + AO353_00915 0.23 -0.9 208,134 + AO353_00915 0.23 +2.1 208,390 + AO353_00915 0.40 +1.2 208,390 + AO353_00915 0.40 +2.6 208,390 + AO353_00915 0.40 +1.4 208,391 - AO353_00915 0.40 +2.7 208,391 - AO353_00915 0.40 +0.6 208,391 - AO353_00915 0.40 +1.1 208,391 - AO353_00915 0.40 +1.0 208,461 - AO353_00915 0.45 +0.8 208,461 - AO353_00915 0.45 +1.3 208,485 + AO353_00915 0.46 +1.3 208,486 - AO353_00915 0.46 +0.7 208,486 - AO353_00915 0.46 +0.2 208,486 - AO353_00915 0.46 +1.7 208,486 - AO353_00915 0.46 +1.7 208,486 - AO353_00915 0.46 +1.5 208,655 + AO353_00915 0.57 +1.3 208,655 + AO353_00915 0.57 +1.7 208,677 + AO353_00915 0.59 +3.2 208,687 - AO353_00915 0.59 +1.3 208,856 + AO353_00915 0.70 -1.6 208,856 + AO353_00915 0.70 +0.6 208,856 + AO353_00915 0.70 +1.0 208,856 + AO353_00915 0.70 +2.3 208,857 - AO353_00915 0.70 +2.2 208,866 - AO353_00915 0.71 +2.0 208,902 + AO353_00915 0.73 +2.7 208,902 + AO353_00915 0.73 +0.4 208,903 - AO353_00915 0.73 +1.8 208,903 - AO353_00915 0.73 +1.6 208,903 - AO353_00915 0.73 +0.9 208,997 + AO353_00915 0.80 +1.1 208,998 - AO353_00915 0.80 +2.6 209,126 + AO353_00915 0.88 +1.0 209,126 + AO353_00915 0.88 +0.3 209,126 + AO353_00915 0.88 +1.4 209,181 + +0.4 209,181 + +0.9 209,307 + -0.6 209,308 - +1.3 209,384 + +0.4 209,384 + +1.4 209,384 + +2.2 209,385 - +0.5 209,385 - +2.0 209,385 - +1.3 209,385 - +2.3 209,385 - +0.9 209,385 - +1.7 209,388 + +1.5 209,388 + -2.0 209,388 + +0.5 209,388 + +1.3 209,388 + +1.5 209,388 + +1.3 209,388 + +1.2 209,388 + +0.8 209,388 + +1.3 209,389 - +1.2 209,389 - +1.5 209,389 - +1.4 209,389 - +1.3 209,389 - +0.6 209,389 - +2.0 209,389 - +0.0 209,389 - +0.4 209,396 + -0.3 209,396 + +0.2 209,396 + -0.6 209,397 - +0.2 209,397 - +0.7 209,397 - +1.9 209,397 - +1.6 209,486 + AO353_00920 0.18 +1.4 209,545 + AO353_00920 0.24 +1.4 209,699 + AO353_00920 0.40 +0.4 209,699 + AO353_00920 0.40 +1.7 209,699 + AO353_00920 0.40 +0.6 209,699 + AO353_00920 0.40 +0.7 209,700 - AO353_00920 0.40 -0.1 209,777 + AO353_00920 0.47 -1.3 209,777 + AO353_00920 0.47 +1.2 209,778 - AO353_00920 0.48 +2.2 209,778 - AO353_00920 0.48 -0.2 209,986 - AO353_00920 0.69 +1.5 209,986 - AO353_00920 0.69 +1.2 210,005 + AO353_00920 0.71 +0.9 210,005 + AO353_00920 0.71 -0.3 210,041 + AO353_00920 0.74 +2.1 210,041 + AO353_00920 0.74 +1.4 210,041 + AO353_00920 0.74 +0.9 210,041 + AO353_00920 0.74 +2.1 210,041 + AO353_00920 0.74 +1.1 210,041 + AO353_00920 0.74 +0.5 210,042 - AO353_00920 0.74 -0.3 210,042 - AO353_00920 0.74 +3.1 210,063 - AO353_00920 0.76 +1.5 210,063 - AO353_00920 0.76 +0.3 210,294 - -0.1 210,294 - +0.2
Or see this region's nucleotide sequence