Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00900 and AO353_00905 overlap by 4 nucleotides AO353_00905 and AO353_00910 are separated by 270 nucleotides AO353_00910 and AO353_00915 are separated by 5 nucleotides
AO353_00900: AO353_00900 - 2-methylisocitrate lyase, at 205,349 to 206,242
_00900
AO353_00905: AO353_00905 - GntR family transcriptional regulator, at 206,239 to 206,961
_00905
AO353_00910: AO353_00910 - ATP-dependent zinc protease, at 207,232 to 207,771
_00910
AO353_00915: AO353_00915 - hypothetical protein, at 207,777 to 209,309
_00915
Position (kb)
207
208 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 206.286 kb on - strand at 206.441 kb on + strand, within AO353_00905 at 206.442 kb on - strand, within AO353_00905 at 206.442 kb on - strand, within AO353_00905 at 206.459 kb on + strand, within AO353_00905 at 206.459 kb on + strand, within AO353_00905 at 206.460 kb on - strand, within AO353_00905 at 206.550 kb on - strand, within AO353_00905 at 206.688 kb on - strand, within AO353_00905 at 206.734 kb on + strand, within AO353_00905 at 206.735 kb on - strand, within AO353_00905 at 206.814 kb on - strand, within AO353_00905 at 207.054 kb on + strand at 207.067 kb on + strand at 207.067 kb on + strand at 207.068 kb on - strand at 207.068 kb on - strand at 207.075 kb on - strand at 207.078 kb on + strand at 207.079 kb on - strand at 207.079 kb on - strand at 207.106 kb on - strand at 207.106 kb on - strand at 207.119 kb on + strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.153 kb on - strand at 207.164 kb on + strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.231 kb on + strand at 207.231 kb on + strand at 207.231 kb on + strand at 207.231 kb on + strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.266 kb on + strand at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.314 kb on - strand, within AO353_00910 at 207.328 kb on + strand, within AO353_00910 at 207.328 kb on + strand, within AO353_00910 at 207.411 kb on + strand, within AO353_00910 at 207.455 kb on - strand, within AO353_00910 at 207.562 kb on + strand, within AO353_00910 at 207.562 kb on + strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.591 kb on + strand, within AO353_00910 at 207.592 kb on - strand, within AO353_00910 at 207.620 kb on + strand, within AO353_00910 at 207.620 kb on + strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.718 kb on - strand at 207.718 kb on - strand at 207.718 kb on - strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.722 kb on - strand at 207.722 kb on - strand at 207.722 kb on - strand at 207.722 kb on - strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.770 kb on - strand at 207.770 kb on - strand at 207.817 kb on + strand at 207.849 kb on + strand at 207.990 kb on + strand, within AO353_00915 at 207.991 kb on - strand, within AO353_00915 at 207.991 kb on - strand, within AO353_00915 at 208.013 kb on + strand, within AO353_00915 at 208.013 kb on + strand, within AO353_00915 at 208.013 kb on + strand, within AO353_00915 at 208.014 kb on - strand, within AO353_00915 at 208.014 kb on - strand, within AO353_00915 at 208.014 kb on - strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.108 kb on - strand, within AO353_00915 at 208.108 kb on - strand, within AO353_00915 at 208.134 kb on + strand, within AO353_00915 at 208.134 kb on + strand, within AO353_00915 at 208.390 kb on + strand, within AO353_00915 at 208.390 kb on + strand, within AO353_00915 at 208.390 kb on + strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.461 kb on - strand, within AO353_00915 at 208.461 kb on - strand, within AO353_00915 at 208.485 kb on + strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.655 kb on + strand, within AO353_00915 at 208.655 kb on + strand, within AO353_00915 at 208.677 kb on + strand, within AO353_00915 at 208.687 kb on - strand, within AO353_00915
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 206,286 - -1.4 206,441 + AO353_00905 0.28 +1.7 206,442 - AO353_00905 0.28 +2.5 206,442 - AO353_00905 0.28 +1.4 206,459 + AO353_00905 0.30 -0.8 206,459 + AO353_00905 0.30 -1.5 206,460 - AO353_00905 0.31 -0.6 206,550 - AO353_00905 0.43 +0.5 206,688 - AO353_00905 0.62 -0.1 206,734 + AO353_00905 0.68 +2.4 206,735 - AO353_00905 0.69 +0.2 206,814 - AO353_00905 0.80 -0.3 207,054 + -0.7 207,067 + -1.9 207,067 + -2.2 207,068 - +0.3 207,068 - -0.8 207,075 - -0.6 207,078 + -1.6 207,079 - -0.6 207,079 - +1.5 207,106 - +1.4 207,106 - +0.2 207,119 + -1.0 207,120 - +1.5 207,120 - +1.0 207,120 - +0.7 207,120 - +1.4 207,120 - +1.7 207,120 - +0.2 207,153 - +1.7 207,164 + -1.7 207,165 - +1.3 207,165 - +1.4 207,165 - -0.1 207,165 - +1.5 207,165 - +0.2 207,165 - -0.2 207,165 - +0.7 207,231 + -1.5 207,231 + -1.6 207,231 + +0.6 207,231 + -0.9 207,232 - +1.7 207,232 - +0.6 207,232 - +2.1 207,232 - +1.5 207,232 - -0.5 207,232 - -1.4 207,266 + +0.3 207,313 + AO353_00910 0.15 +1.1 207,313 + AO353_00910 0.15 +1.5 207,313 + AO353_00910 0.15 +1.0 207,313 + AO353_00910 0.15 -0.1 207,313 + AO353_00910 0.15 +2.2 207,314 - AO353_00910 0.15 +2.6 207,328 + AO353_00910 0.18 +0.1 207,328 + AO353_00910 0.18 +0.3 207,411 + AO353_00910 0.33 +0.7 207,455 - AO353_00910 0.41 +2.2 207,562 + AO353_00910 0.61 +2.2 207,562 + AO353_00910 0.61 +0.2 207,563 - AO353_00910 0.61 +1.4 207,563 - AO353_00910 0.61 +0.9 207,563 - AO353_00910 0.61 +1.6 207,563 - AO353_00910 0.61 +0.5 207,563 - AO353_00910 0.61 +1.7 207,563 - AO353_00910 0.61 +1.6 207,591 + AO353_00910 0.66 -0.5 207,592 - AO353_00910 0.67 +1.0 207,620 + AO353_00910 0.72 +0.3 207,620 + AO353_00910 0.72 +0.2 207,621 - AO353_00910 0.72 -1.7 207,621 - AO353_00910 0.72 +1.5 207,621 - AO353_00910 0.72 +1.9 207,621 - AO353_00910 0.72 +1.2 207,621 - AO353_00910 0.72 +2.5 207,621 - AO353_00910 0.72 +0.6 207,621 - AO353_00910 0.72 +0.0 207,621 - AO353_00910 0.72 +1.3 207,621 - AO353_00910 0.72 +1.5 207,621 - AO353_00910 0.72 +2.4 207,621 - AO353_00910 0.72 -1.7 207,621 - AO353_00910 0.72 -1.7 207,717 + AO353_00910 0.90 +0.2 207,717 + AO353_00910 0.90 +0.9 207,717 + AO353_00910 0.90 +0.7 207,717 + AO353_00910 0.90 +0.7 207,717 + AO353_00910 0.90 -0.1 207,717 + AO353_00910 0.90 -0.3 207,717 + AO353_00910 0.90 +0.8 207,717 + AO353_00910 0.90 -1.4 207,718 - +0.7 207,718 - +0.6 207,718 - +1.5 207,721 + -0.8 207,721 + -0.6 207,721 + +0.9 207,721 + +1.7 207,721 + +0.9 207,721 + +2.7 207,722 - +0.2 207,722 - +0.6 207,722 - +1.4 207,722 - +1.1 207,769 + +1.7 207,769 + -0.6 207,769 + +1.5 207,769 + +2.3 207,769 + +0.6 207,769 + -1.4 207,770 - +1.5 207,770 - +1.7 207,817 + +0.2 207,849 + +2.4 207,990 + AO353_00915 0.14 +0.6 207,991 - AO353_00915 0.14 +0.5 207,991 - AO353_00915 0.14 +0.6 208,013 + AO353_00915 0.15 +1.7 208,013 + AO353_00915 0.15 +0.4 208,013 + AO353_00915 0.15 +1.6 208,014 - AO353_00915 0.15 -0.4 208,014 - AO353_00915 0.15 +0.9 208,014 - AO353_00915 0.15 +1.4 208,026 + AO353_00915 0.16 +0.6 208,026 + AO353_00915 0.16 +0.7 208,026 + AO353_00915 0.16 +1.5 208,026 + AO353_00915 0.16 +2.0 208,026 + AO353_00915 0.16 +1.7 208,026 + AO353_00915 0.16 +1.2 208,027 - AO353_00915 0.16 +1.7 208,027 - AO353_00915 0.16 +2.1 208,027 - AO353_00915 0.16 +1.4 208,027 - AO353_00915 0.16 +1.0 208,027 - AO353_00915 0.16 +1.7 208,027 - AO353_00915 0.16 +1.4 208,027 - AO353_00915 0.16 +0.4 208,027 - AO353_00915 0.16 +2.3 208,027 - AO353_00915 0.16 +1.3 208,027 - AO353_00915 0.16 +1.7 208,027 - AO353_00915 0.16 +1.2 208,027 - AO353_00915 0.16 +1.5 208,027 - AO353_00915 0.16 +1.7 208,107 + AO353_00915 0.22 +0.5 208,107 + AO353_00915 0.22 +0.5 208,107 + AO353_00915 0.22 +2.0 208,107 + AO353_00915 0.22 +2.1 208,108 - AO353_00915 0.22 +1.7 208,108 - AO353_00915 0.22 +1.4 208,134 + AO353_00915 0.23 -0.9 208,134 + AO353_00915 0.23 +2.1 208,390 + AO353_00915 0.40 +1.2 208,390 + AO353_00915 0.40 +2.6 208,390 + AO353_00915 0.40 +1.4 208,391 - AO353_00915 0.40 +2.7 208,391 - AO353_00915 0.40 +0.6 208,391 - AO353_00915 0.40 +1.1 208,391 - AO353_00915 0.40 +1.0 208,461 - AO353_00915 0.45 +0.8 208,461 - AO353_00915 0.45 +1.3 208,485 + AO353_00915 0.46 +1.3 208,486 - AO353_00915 0.46 +0.7 208,486 - AO353_00915 0.46 +0.2 208,486 - AO353_00915 0.46 +1.7 208,486 - AO353_00915 0.46 +1.7 208,486 - AO353_00915 0.46 +1.5 208,655 + AO353_00915 0.57 +1.3 208,655 + AO353_00915 0.57 +1.7 208,677 + AO353_00915 0.59 +3.2 208,687 - AO353_00915 0.59 +1.3
Or see this region's nucleotide sequence