Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00700 and AO353_00705 are separated by 136 nucleotides AO353_00705 and AO353_00710 are separated by 416 nucleotides AO353_00710 and AO353_00715 are separated by 211 nucleotides
AO353_00700: AO353_00700 - Cro/Cl family transcriptional regulator, at 149,533 to 149,847
_00700
AO353_00705: AO353_00705 - drug:proton antiporter, at 149,984 to 150,352
_00705
AO353_00710: AO353_00710 - aromatic ring-opening dioxygenase LigA, at 150,769 to 153,126
_00710
AO353_00715: AO353_00715 - cell division protein ZipA, at 153,338 to 154,186
_00715
Position (kb) 150
151
152
153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 149.777 kb on + strand, within AO353_00700 at 149.778 kb on - strand, within AO353_00700 at 149.778 kb on - strand, within AO353_00700 at 149.778 kb on - strand, within AO353_00700 at 149.877 kb on + strand at 149.877 kb on + strand at 149.877 kb on + strand at 149.888 kb on + strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.916 kb on + strand at 149.916 kb on + strand at 149.916 kb on + strand at 149.946 kb on - strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 150.000 kb on - strand at 150.000 kb on - strand at 150.000 kb on - strand at 150.000 kb on - strand at 150.011 kb on + strand at 150.011 kb on + strand at 150.012 kb on - strand at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.045 kb on - strand, within AO353_00705 at 150.045 kb on - strand, within AO353_00705 at 150.079 kb on - strand, within AO353_00705 at 150.079 kb on - strand, within AO353_00705 at 150.117 kb on + strand, within AO353_00705 at 150.117 kb on + strand, within AO353_00705 at 150.118 kb on - strand, within AO353_00705 at 150.118 kb on - strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.228 kb on - strand, within AO353_00705 at 150.228 kb on - strand, within AO353_00705 at 150.228 kb on - strand, within AO353_00705 at 150.228 kb on - strand, within AO353_00705 at 150.228 kb on - strand, within AO353_00705 at 150.651 kb on - strand at 150.658 kb on - strand at 150.704 kb on + strand at 150.716 kb on + strand at 150.716 kb on + strand at 150.717 kb on - strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 153.140 kb on + strand at 153.180 kb on - strand at 153.190 kb on - strand at 153.310 kb on + strand at 153.310 kb on + strand at 153.311 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 149,777 + AO353_00700 0.77 +1.1 149,778 - AO353_00700 0.78 -1.2 149,778 - AO353_00700 0.78 +0.3 149,778 - AO353_00700 0.78 -1.4 149,877 + -0.6 149,877 + +1.4 149,877 + +0.9 149,888 + -1.0 149,889 - +0.1 149,889 - -2.2 149,889 - -1.6 149,889 - +1.1 149,889 - -3.3 149,916 + +1.7 149,916 + -1.5 149,916 + -0.3 149,946 - +0.7 149,999 + +0.5 149,999 + -1.9 149,999 + -1.6 149,999 + +1.5 149,999 + +0.5 149,999 + +0.6 150,000 - -0.7 150,000 - -0.2 150,000 - +1.3 150,000 - -1.4 150,011 + -1.4 150,011 + -1.0 150,012 - +0.5 150,044 + AO353_00705 0.16 +1.1 150,044 + AO353_00705 0.16 -0.7 150,044 + AO353_00705 0.16 -1.4 150,044 + AO353_00705 0.16 -0.4 150,044 + AO353_00705 0.16 -1.0 150,044 + AO353_00705 0.16 -1.4 150,044 + AO353_00705 0.16 -1.1 150,044 + AO353_00705 0.16 -1.1 150,045 - AO353_00705 0.17 +1.0 150,045 - AO353_00705 0.17 -0.9 150,079 - AO353_00705 0.26 +0.4 150,079 - AO353_00705 0.26 -0.4 150,117 + AO353_00705 0.36 -0.1 150,117 + AO353_00705 0.36 -0.5 150,118 - AO353_00705 0.36 -0.1 150,118 - AO353_00705 0.36 +0.5 150,227 + AO353_00705 0.66 +0.9 150,227 + AO353_00705 0.66 -0.0 150,227 + AO353_00705 0.66 -0.8 150,227 + AO353_00705 0.66 +1.0 150,227 + AO353_00705 0.66 +0.6 150,227 + AO353_00705 0.66 +0.4 150,228 - AO353_00705 0.66 +0.1 150,228 - AO353_00705 0.66 -2.1 150,228 - AO353_00705 0.66 -2.1 150,228 - AO353_00705 0.66 -0.1 150,228 - AO353_00705 0.66 -3.1 150,651 - +0.7 150,658 - -0.1 150,704 + +1.3 150,716 + -2.0 150,716 + -0.9 150,717 - -0.0 150,724 + -1.9 150,724 + -0.7 150,724 + -0.3 150,724 + +0.5 150,724 + +1.1 150,724 + +0.3 150,724 + -0.7 150,724 + -0.8 150,724 + -0.5 150,724 + +0.1 150,724 + +0.5 150,724 + -1.4 150,724 + -2.3 150,724 + +1.1 150,724 + +0.5 150,724 + -2.2 150,725 - +0.8 150,725 - +1.0 150,725 - +1.7 150,725 - -0.6 150,725 - +1.1 150,725 - -0.3 150,725 - -0.9 150,725 - -1.0 150,725 - -1.4 150,725 - -0.9 150,725 - -0.3 150,725 - +0.6 150,725 - -0.2 150,725 - +1.7 150,725 - +0.0 150,725 - -0.5 150,725 - -0.3 150,725 - -2.7 150,725 - -2.2 150,725 - -1.1 150,725 - +0.3 150,725 - +0.4 150,725 - -1.1 150,725 - +0.3 150,725 - -0.8 150,725 - -0.7 153,140 + -0.3 153,180 - -1.9 153,190 - -1.9 153,310 + -0.6 153,310 + -2.2 153,311 - -1.7
Or see this region's nucleotide sequence