Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS21415

Experiment: D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS21405 and ABZR86_RS21410 overlap by 4 nucleotidesABZR86_RS21410 and ABZR86_RS21415 are separated by 223 nucleotidesABZR86_RS21415 and ABZR86_RS21420 are separated by 159 nucleotides ABZR86_RS21405: ABZR86_RS21405 - biotin--protein ligase, at 247,825 to 248,115 _RS21405 ABZR86_RS21410: ABZR86_RS21410 - biotin/lipoate A/B protein ligase family protein, at 248,112 to 248,888 _RS21410 ABZR86_RS21415: ABZR86_RS21415 - hypothetical protein, at 249,112 to 249,600 _RS21415 ABZR86_RS21420: ABZR86_RS21420 - alpha/beta fold hydrolase, at 249,760 to 250,602 _RS21420 Position (kb) 249 250Strain fitness (log2 ratio) -1 0 1at 248.403 kb on + strand, within ABZR86_RS21410at 248.404 kb on - strand, within ABZR86_RS21410at 248.412 kb on + strand, within ABZR86_RS21410at 248.412 kb on + strand, within ABZR86_RS21410at 248.413 kb on - strand, within ABZR86_RS21410at 248.413 kb on - strand, within ABZR86_RS21410at 248.413 kb on - strand, within ABZR86_RS21410at 248.458 kb on - strand, within ABZR86_RS21410at 248.458 kb on - strand, within ABZR86_RS21410at 248.517 kb on + strand, within ABZR86_RS21410at 248.575 kb on + strand, within ABZR86_RS21410at 248.575 kb on + strand, within ABZR86_RS21410at 248.575 kb on + strand, within ABZR86_RS21410at 248.576 kb on - strand, within ABZR86_RS21410at 248.617 kb on - strand, within ABZR86_RS21410at 248.617 kb on - strand, within ABZR86_RS21410at 248.886 kb on + strandat 248.911 kb on - strandat 248.911 kb on - strandat 248.997 kb on + strandat 248.997 kb on + strandat 248.997 kb on + strandat 248.998 kb on - strandat 248.998 kb on - strandat 249.061 kb on - strandat 249.085 kb on + strandat 249.303 kb on + strand, within ABZR86_RS21415at 249.303 kb on + strand, within ABZR86_RS21415at 249.341 kb on - strand, within ABZR86_RS21415at 249.341 kb on - strand, within ABZR86_RS21415at 249.341 kb on - strand, within ABZR86_RS21415at 249.343 kb on + strand, within ABZR86_RS21415at 249.343 kb on + strand, within ABZR86_RS21415at 249.343 kb on + strand, within ABZR86_RS21415at 249.344 kb on - strand, within ABZR86_RS21415at 249.424 kb on + strand, within ABZR86_RS21415at 249.424 kb on + strand, within ABZR86_RS21415at 249.424 kb on + strand, within ABZR86_RS21415at 249.424 kb on + strand, within ABZR86_RS21415at 249.424 kb on + strand, within ABZR86_RS21415at 249.424 kb on + strand, within ABZR86_RS21415at 249.425 kb on - strand, within ABZR86_RS21415at 249.496 kb on + strand, within ABZR86_RS21415at 249.496 kb on + strand, within ABZR86_RS21415at 249.496 kb on + strand, within ABZR86_RS21415at 249.496 kb on + strand, within ABZR86_RS21415at 249.496 kb on + strand, within ABZR86_RS21415at 249.496 kb on + strand, within ABZR86_RS21415at 249.497 kb on - strand, within ABZR86_RS21415at 249.497 kb on - strand, within ABZR86_RS21415at 249.497 kb on - strand, within ABZR86_RS21415at 249.605 kb on + strandat 249.605 kb on + strandat 249.605 kb on + strandat 249.606 kb on - strandat 249.655 kb on + strandat 249.692 kb on + strandat 249.692 kb on + strandat 249.692 kb on + strandat 249.693 kb on - strandat 249.693 kb on - strandat 249.725 kb on - strandat 249.889 kb on + strand, within ABZR86_RS21420at 249.890 kb on - strand, within ABZR86_RS21420at 249.958 kb on + strand, within ABZR86_RS21420at 250.096 kb on + strand, within ABZR86_RS21420at 250.097 kb on - strand, within ABZR86_RS21420at 250.138 kb on + strand, within ABZR86_RS21420at 250.138 kb on + strand, within ABZR86_RS21420at 250.139 kb on - strand, within ABZR86_RS21420at 250.219 kb on + strand, within ABZR86_RS21420at 250.330 kb on + strand, within ABZR86_RS21420at 250.330 kb on + strand, within ABZR86_RS21420at 250.331 kb on - strand, within ABZR86_RS21420at 250.331 kb on - strand, within ABZR86_RS21420at 250.489 kb on + strand, within ABZR86_RS21420at 250.490 kb on - strand, within ABZR86_RS21420at 250.490 kb on - strand, within ABZR86_RS21420at 250.490 kb on - strand, within ABZR86_RS21420at 250.490 kb on - strand, within ABZR86_RS21420at 250.490 kb on - strand, within ABZR86_RS21420

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
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248,403 + ABZR86_RS21410 0.37 +1.4
248,404 - ABZR86_RS21410 0.38 -0.5
248,412 + ABZR86_RS21410 0.39 +0.6
248,412 + ABZR86_RS21410 0.39 +0.2
248,413 - ABZR86_RS21410 0.39 +0.2
248,413 - ABZR86_RS21410 0.39 -0.2
248,413 - ABZR86_RS21410 0.39 -0.4
248,458 - ABZR86_RS21410 0.45 -1.4
248,458 - ABZR86_RS21410 0.45 +0.8
248,517 + ABZR86_RS21410 0.52 -0.2
248,575 + ABZR86_RS21410 0.60 +0.2
248,575 + ABZR86_RS21410 0.60 -0.4
248,575 + ABZR86_RS21410 0.60 +0.2
248,576 - ABZR86_RS21410 0.60 -1.0
248,617 - ABZR86_RS21410 0.65 +0.7
248,617 - ABZR86_RS21410 0.65 +0.5
248,886 + +0.8
248,911 - -0.9
248,911 - +0.1
248,997 + -0.4
248,997 + +0.1
248,997 + -0.4
248,998 - +0.6
248,998 - +0.6
249,061 - -0.1
249,085 + -0.4
249,303 + ABZR86_RS21415 0.39 -0.1
249,303 + ABZR86_RS21415 0.39 +0.4
249,341 - ABZR86_RS21415 0.47 +0.1
249,341 - ABZR86_RS21415 0.47 -0.9
249,341 - ABZR86_RS21415 0.47 +0.2
249,343 + ABZR86_RS21415 0.47 +0.2
249,343 + ABZR86_RS21415 0.47 -0.5
249,343 + ABZR86_RS21415 0.47 -0.4
249,344 - ABZR86_RS21415 0.47 -0.4
249,424 + ABZR86_RS21415 0.64 -0.8
249,424 + ABZR86_RS21415 0.64 -0.1
249,424 + ABZR86_RS21415 0.64 -0.0
249,424 + ABZR86_RS21415 0.64 -0.8
249,424 + ABZR86_RS21415 0.64 +0.5
249,424 + ABZR86_RS21415 0.64 +0.5
249,425 - ABZR86_RS21415 0.64 -0.2
249,496 + ABZR86_RS21415 0.79 +0.6
249,496 + ABZR86_RS21415 0.79 +0.0
249,496 + ABZR86_RS21415 0.79 -1.4
249,496 + ABZR86_RS21415 0.79 -0.0
249,496 + ABZR86_RS21415 0.79 -0.5
249,496 + ABZR86_RS21415 0.79 +0.4
249,497 - ABZR86_RS21415 0.79 -0.4
249,497 - ABZR86_RS21415 0.79 +0.2
249,497 - ABZR86_RS21415 0.79 -0.0
249,605 + +0.4
249,605 + -0.3
249,605 + -0.5
249,606 - +0.3
249,655 + +0.2
249,692 + -0.9
249,692 + +1.0
249,692 + +0.4
249,693 - +0.3
249,693 - -0.2
249,725 - +0.1
249,889 + ABZR86_RS21420 0.15 +0.2
249,890 - ABZR86_RS21420 0.15 +0.1
249,958 + ABZR86_RS21420 0.23 -0.3
250,096 + ABZR86_RS21420 0.40 +0.2
250,097 - ABZR86_RS21420 0.40 -0.4
250,138 + ABZR86_RS21420 0.45 -0.1
250,138 + ABZR86_RS21420 0.45 -0.1
250,139 - ABZR86_RS21420 0.45 -0.9
250,219 + ABZR86_RS21420 0.54 +1.6
250,330 + ABZR86_RS21420 0.68 +0.0
250,330 + ABZR86_RS21420 0.68 -0.6
250,331 - ABZR86_RS21420 0.68 -0.9
250,331 - ABZR86_RS21420 0.68 -0.4
250,489 + ABZR86_RS21420 0.86 -0.8
250,490 - ABZR86_RS21420 0.87 -0.8
250,490 - ABZR86_RS21420 0.87 +0.0
250,490 - ABZR86_RS21420 0.87 -0.8
250,490 - ABZR86_RS21420 0.87 -1.1
250,490 - ABZR86_RS21420 0.87 -1.4

Or see this region's nucleotide sequence