Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS16460

Experiment: D-Cycloserine 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS16455 and ABZR86_RS16460 overlap by 4 nucleotidesABZR86_RS16460 and ABZR86_RS16465 overlap by 4 nucleotides ABZR86_RS16455: ABZR86_RS16455 - alpha/beta hydrolase, at 3,715,559 to 3,717,154 _RS16455 ABZR86_RS16460: ABZR86_RS16460 - ATP-binding cassette domain-containing protein, at 3,717,151 to 3,717,885 _RS16460 ABZR86_RS16465: ABZR86_RS16465 - ABC transporter permease, at 3,717,882 to 3,719,087 _RS16465 Position (kb) 3717 3718Strain fitness (log2 ratio) -2 -1 0 1at 3716.189 kb on + strand, within ABZR86_RS16455at 3716.189 kb on + strand, within ABZR86_RS16455at 3716.189 kb on + strand, within ABZR86_RS16455at 3716.189 kb on + strand, within ABZR86_RS16455at 3716.189 kb on + strand, within ABZR86_RS16455at 3716.190 kb on - strand, within ABZR86_RS16455at 3716.190 kb on - strand, within ABZR86_RS16455at 3716.273 kb on + strand, within ABZR86_RS16455at 3716.274 kb on - strand, within ABZR86_RS16455at 3716.297 kb on + strand, within ABZR86_RS16455at 3716.298 kb on - strand, within ABZR86_RS16455at 3716.298 kb on - strand, within ABZR86_RS16455at 3716.298 kb on - strand, within ABZR86_RS16455at 3716.477 kb on + strand, within ABZR86_RS16455at 3716.540 kb on + strand, within ABZR86_RS16455at 3716.540 kb on + strand, within ABZR86_RS16455at 3716.540 kb on + strand, within ABZR86_RS16455at 3716.541 kb on - strand, within ABZR86_RS16455at 3716.541 kb on - strand, within ABZR86_RS16455at 3716.570 kb on + strand, within ABZR86_RS16455at 3716.570 kb on + strand, within ABZR86_RS16455at 3716.603 kb on + strand, within ABZR86_RS16455at 3716.604 kb on - strand, within ABZR86_RS16455at 3717.292 kb on + strand, within ABZR86_RS16460at 3717.292 kb on + strand, within ABZR86_RS16460at 3717.292 kb on + strand, within ABZR86_RS16460at 3717.292 kb on + strand, within ABZR86_RS16460at 3717.293 kb on - strand, within ABZR86_RS16460at 3717.293 kb on - strand, within ABZR86_RS16460at 3717.406 kb on + strand, within ABZR86_RS16460at 3717.406 kb on + strand, within ABZR86_RS16460at 3717.406 kb on + strand, within ABZR86_RS16460at 3717.406 kb on + strand, within ABZR86_RS16460at 3717.406 kb on + strand, within ABZR86_RS16460at 3717.407 kb on - strand, within ABZR86_RS16460at 3717.407 kb on - strand, within ABZR86_RS16460at 3717.407 kb on - strand, within ABZR86_RS16460at 3717.440 kb on - strand, within ABZR86_RS16460at 3717.440 kb on - strand, within ABZR86_RS16460at 3717.440 kb on - strand, within ABZR86_RS16460at 3717.538 kb on - strand, within ABZR86_RS16460at 3717.758 kb on + strand, within ABZR86_RS16460at 3717.758 kb on + strand, within ABZR86_RS16460at 3717.758 kb on + strand, within ABZR86_RS16460at 3717.758 kb on + strand, within ABZR86_RS16460at 3717.759 kb on - strand, within ABZR86_RS16460at 3717.759 kb on - strand, within ABZR86_RS16460at 3717.931 kb on + strandat 3717.931 kb on + strandat 3717.932 kb on - strandat 3717.932 kb on - strandat 3718.227 kb on + strand, within ABZR86_RS16465at 3718.227 kb on + strand, within ABZR86_RS16465at 3718.228 kb on - strand, within ABZR86_RS16465at 3718.338 kb on + strand, within ABZR86_RS16465at 3718.474 kb on - strand, within ABZR86_RS16465at 3718.509 kb on + strand, within ABZR86_RS16465at 3718.509 kb on + strand, within ABZR86_RS16465at 3718.509 kb on + strand, within ABZR86_RS16465at 3718.509 kb on + strand, within ABZR86_RS16465at 3718.509 kb on + strand, within ABZR86_RS16465at 3718.509 kb on + strand, within ABZR86_RS16465at 3718.509 kb on + strand, within ABZR86_RS16465at 3718.510 kb on - strand, within ABZR86_RS16465at 3718.510 kb on - strand, within ABZR86_RS16465at 3718.510 kb on - strand, within ABZR86_RS16465at 3718.510 kb on - strand, within ABZR86_RS16465at 3718.510 kb on - strand, within ABZR86_RS16465at 3718.510 kb on - strand, within ABZR86_RS16465at 3718.510 kb on - strand, within ABZR86_RS16465at 3718.634 kb on + strand, within ABZR86_RS16465at 3718.833 kb on + strand, within ABZR86_RS16465at 3718.833 kb on + strand, within ABZR86_RS16465at 3718.833 kb on + strand, within ABZR86_RS16465at 3718.833 kb on + strand, within ABZR86_RS16465at 3718.833 kb on + strand, within ABZR86_RS16465at 3718.833 kb on + strand, within ABZR86_RS16465at 3718.833 kb on + strand, within ABZR86_RS16465at 3718.834 kb on - strand, within ABZR86_RS16465at 3718.834 kb on - strand, within ABZR86_RS16465at 3718.834 kb on - strand, within ABZR86_RS16465at 3718.834 kb on - strand, within ABZR86_RS16465

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
remove
3,716,189 + ABZR86_RS16455 0.39 +0.1
3,716,189 + ABZR86_RS16455 0.39 +0.1
3,716,189 + ABZR86_RS16455 0.39 -0.3
3,716,189 + ABZR86_RS16455 0.39 +0.5
3,716,189 + ABZR86_RS16455 0.39 +0.2
3,716,190 - ABZR86_RS16455 0.40 -0.5
3,716,190 - ABZR86_RS16455 0.40 -1.0
3,716,273 + ABZR86_RS16455 0.45 -0.5
3,716,274 - ABZR86_RS16455 0.45 -0.4
3,716,297 + ABZR86_RS16455 0.46 +0.0
3,716,298 - ABZR86_RS16455 0.46 +1.1
3,716,298 - ABZR86_RS16455 0.46 +0.2
3,716,298 - ABZR86_RS16455 0.46 +0.7
3,716,477 + ABZR86_RS16455 0.58 +0.7
3,716,540 + ABZR86_RS16455 0.61 -0.0
3,716,540 + ABZR86_RS16455 0.61 -0.3
3,716,540 + ABZR86_RS16455 0.61 +0.1
3,716,541 - ABZR86_RS16455 0.62 +0.5
3,716,541 - ABZR86_RS16455 0.62 -0.2
3,716,570 + ABZR86_RS16455 0.63 +0.3
3,716,570 + ABZR86_RS16455 0.63 +0.5
3,716,603 + ABZR86_RS16455 0.65 -0.2
3,716,604 - ABZR86_RS16455 0.65 +0.8
3,717,292 + ABZR86_RS16460 0.19 +0.4
3,717,292 + ABZR86_RS16460 0.19 -0.3
3,717,292 + ABZR86_RS16460 0.19 -0.9
3,717,292 + ABZR86_RS16460 0.19 +0.4
3,717,293 - ABZR86_RS16460 0.19 -0.8
3,717,293 - ABZR86_RS16460 0.19 -0.7
3,717,406 + ABZR86_RS16460 0.35 -0.7
3,717,406 + ABZR86_RS16460 0.35 -0.6
3,717,406 + ABZR86_RS16460 0.35 +0.2
3,717,406 + ABZR86_RS16460 0.35 -0.5
3,717,406 + ABZR86_RS16460 0.35 -0.2
3,717,407 - ABZR86_RS16460 0.35 +0.7
3,717,407 - ABZR86_RS16460 0.35 +0.5
3,717,407 - ABZR86_RS16460 0.35 -0.0
3,717,440 - ABZR86_RS16460 0.39 -0.0
3,717,440 - ABZR86_RS16460 0.39 -0.1
3,717,440 - ABZR86_RS16460 0.39 +0.1
3,717,538 - ABZR86_RS16460 0.53 -0.2
3,717,758 + ABZR86_RS16460 0.83 -0.3
3,717,758 + ABZR86_RS16460 0.83 -0.3
3,717,758 + ABZR86_RS16460 0.83 -0.1
3,717,758 + ABZR86_RS16460 0.83 -1.8
3,717,759 - ABZR86_RS16460 0.83 +0.5
3,717,759 - ABZR86_RS16460 0.83 -0.0
3,717,931 + -0.3
3,717,931 + +0.1
3,717,932 - -0.8
3,717,932 - -0.4
3,718,227 + ABZR86_RS16465 0.29 +0.4
3,718,227 + ABZR86_RS16465 0.29 +0.1
3,718,228 - ABZR86_RS16465 0.29 +0.1
3,718,338 + ABZR86_RS16465 0.38 -0.2
3,718,474 - ABZR86_RS16465 0.49 +0.4
3,718,509 + ABZR86_RS16465 0.52 -0.7
3,718,509 + ABZR86_RS16465 0.52 +0.1
3,718,509 + ABZR86_RS16465 0.52 +0.1
3,718,509 + ABZR86_RS16465 0.52 +0.1
3,718,509 + ABZR86_RS16465 0.52 -0.7
3,718,509 + ABZR86_RS16465 0.52 -1.6
3,718,509 + ABZR86_RS16465 0.52 -0.3
3,718,510 - ABZR86_RS16465 0.52 -0.7
3,718,510 - ABZR86_RS16465 0.52 -0.4
3,718,510 - ABZR86_RS16465 0.52 -0.4
3,718,510 - ABZR86_RS16465 0.52 -0.6
3,718,510 - ABZR86_RS16465 0.52 -0.2
3,718,510 - ABZR86_RS16465 0.52 -0.2
3,718,510 - ABZR86_RS16465 0.52 -0.0
3,718,634 + ABZR86_RS16465 0.62 -0.2
3,718,833 + ABZR86_RS16465 0.79 -0.6
3,718,833 + ABZR86_RS16465 0.79 -0.2
3,718,833 + ABZR86_RS16465 0.79 +0.3
3,718,833 + ABZR86_RS16465 0.79 +0.0
3,718,833 + ABZR86_RS16465 0.79 -0.6
3,718,833 + ABZR86_RS16465 0.79 -0.0
3,718,833 + ABZR86_RS16465 0.79 -0.3
3,718,834 - ABZR86_RS16465 0.79 -0.9
3,718,834 - ABZR86_RS16465 0.79 +0.5
3,718,834 - ABZR86_RS16465 0.79 +0.4
3,718,834 - ABZR86_RS16465 0.79 -0.0

Or see this region's nucleotide sequence