Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS07390

Experiment: D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS07385 and ABZR86_RS07390 are separated by 510 nucleotidesABZR86_RS07390 and ABZR86_RS07395 are separated by 255 nucleotides ABZR86_RS07385: ABZR86_RS07385 - autotransporter-associated beta strand repeat-containing protein, at 1,622,297 to 1,628,095 _RS07385 ABZR86_RS07390: ABZR86_RS07390 - RidA family protein, at 1,628,606 to 1,629,079 _RS07390 ABZR86_RS07395: ABZR86_RS07395 - TonB-dependent siderophore receptor, at 1,629,335 to 1,631,563 _RS07395 Position (kb) 1628 1629 1630Strain fitness (log2 ratio) -1 0 1at 1628.083 kb on - strandat 1628.111 kb on + strandat 1628.112 kb on - strandat 1628.112 kb on - strandat 1628.112 kb on - strandat 1628.198 kb on + strandat 1628.198 kb on + strandat 1628.198 kb on + strandat 1628.199 kb on - strandat 1628.199 kb on - strandat 1628.199 kb on - strandat 1628.275 kb on + strandat 1628.449 kb on + strandat 1628.449 kb on + strandat 1628.464 kb on + strandat 1628.464 kb on + strandat 1628.568 kb on + strandat 1628.569 kb on - strandat 1628.569 kb on - strandat 1628.569 kb on - strandat 1628.732 kb on + strand, within ABZR86_RS07390at 1628.732 kb on + strand, within ABZR86_RS07390at 1628.733 kb on - strand, within ABZR86_RS07390at 1628.774 kb on + strand, within ABZR86_RS07390at 1628.774 kb on + strand, within ABZR86_RS07390at 1628.774 kb on + strand, within ABZR86_RS07390at 1628.774 kb on + strand, within ABZR86_RS07390at 1628.774 kb on + strand, within ABZR86_RS07390at 1628.924 kb on + strand, within ABZR86_RS07390at 1628.924 kb on + strand, within ABZR86_RS07390at 1628.924 kb on + strand, within ABZR86_RS07390at 1628.924 kb on + strand, within ABZR86_RS07390at 1628.924 kb on + strand, within ABZR86_RS07390at 1628.924 kb on + strand, within ABZR86_RS07390at 1628.925 kb on - strand, within ABZR86_RS07390at 1628.925 kb on - strand, within ABZR86_RS07390at 1628.925 kb on - strand, within ABZR86_RS07390at 1628.975 kb on + strand, within ABZR86_RS07390at 1628.975 kb on + strand, within ABZR86_RS07390at 1628.975 kb on + strand, within ABZR86_RS07390at 1628.975 kb on + strand, within ABZR86_RS07390at 1628.975 kb on + strand, within ABZR86_RS07390at 1628.975 kb on + strand, within ABZR86_RS07390at 1628.975 kb on + strand, within ABZR86_RS07390at 1628.976 kb on - strand, within ABZR86_RS07390at 1628.976 kb on - strand, within ABZR86_RS07390at 1629.013 kb on - strand, within ABZR86_RS07390at 1629.077 kb on + strandat 1629.114 kb on + strandat 1629.229 kb on + strandat 1629.253 kb on + strandat 1629.254 kb on - strandat 1629.301 kb on + strandat 1629.302 kb on - strandat 1629.574 kb on + strand, within ABZR86_RS07395at 1629.575 kb on - strand, within ABZR86_RS07395at 1629.581 kb on + strand, within ABZR86_RS07395at 1629.758 kb on + strand, within ABZR86_RS07395at 1629.758 kb on + strand, within ABZR86_RS07395at 1629.758 kb on + strand, within ABZR86_RS07395at 1629.759 kb on - strand, within ABZR86_RS07395at 1629.759 kb on - strand, within ABZR86_RS07395at 1629.759 kb on - strand, within ABZR86_RS07395at 1629.761 kb on + strand, within ABZR86_RS07395at 1629.860 kb on + strand, within ABZR86_RS07395at 1629.861 kb on - strand, within ABZR86_RS07395at 1629.861 kb on - strand, within ABZR86_RS07395at 1629.861 kb on - strand, within ABZR86_RS07395at 1629.869 kb on - strand, within ABZR86_RS07395

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
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1,628,083 - +0.4
1,628,111 + -0.2
1,628,112 - +0.3
1,628,112 - +0.8
1,628,112 - -1.5
1,628,198 + -0.4
1,628,198 + +0.1
1,628,198 + -0.5
1,628,199 - -0.2
1,628,199 - -1.2
1,628,199 - -0.1
1,628,275 + +0.6
1,628,449 + +0.3
1,628,449 + -0.2
1,628,464 + +0.1
1,628,464 + -0.1
1,628,568 + +0.6
1,628,569 - +1.2
1,628,569 - -0.9
1,628,569 - -0.2
1,628,732 + ABZR86_RS07390 0.27 -0.1
1,628,732 + ABZR86_RS07390 0.27 -0.0
1,628,733 - ABZR86_RS07390 0.27 -0.5
1,628,774 + ABZR86_RS07390 0.35 +0.9
1,628,774 + ABZR86_RS07390 0.35 -0.1
1,628,774 + ABZR86_RS07390 0.35 -0.1
1,628,774 + ABZR86_RS07390 0.35 +0.1
1,628,774 + ABZR86_RS07390 0.35 -0.3
1,628,924 + ABZR86_RS07390 0.67 +0.0
1,628,924 + ABZR86_RS07390 0.67 +0.1
1,628,924 + ABZR86_RS07390 0.67 +0.0
1,628,924 + ABZR86_RS07390 0.67 +0.4
1,628,924 + ABZR86_RS07390 0.67 -1.1
1,628,924 + ABZR86_RS07390 0.67 -0.6
1,628,925 - ABZR86_RS07390 0.67 +0.5
1,628,925 - ABZR86_RS07390 0.67 -0.5
1,628,925 - ABZR86_RS07390 0.67 -1.0
1,628,975 + ABZR86_RS07390 0.78 +0.2
1,628,975 + ABZR86_RS07390 0.78 -0.3
1,628,975 + ABZR86_RS07390 0.78 +0.8
1,628,975 + ABZR86_RS07390 0.78 +0.1
1,628,975 + ABZR86_RS07390 0.78 -0.5
1,628,975 + ABZR86_RS07390 0.78 +0.4
1,628,975 + ABZR86_RS07390 0.78 +0.7
1,628,976 - ABZR86_RS07390 0.78 +0.6
1,628,976 - ABZR86_RS07390 0.78 +0.6
1,629,013 - ABZR86_RS07390 0.86 +0.1
1,629,077 + +0.2
1,629,114 + -0.2
1,629,229 + -0.0
1,629,253 + -0.0
1,629,254 - +0.9
1,629,301 + -0.1
1,629,302 - +0.9
1,629,574 + ABZR86_RS07395 0.11 -0.4
1,629,575 - ABZR86_RS07395 0.11 +0.6
1,629,581 + ABZR86_RS07395 0.11 +0.6
1,629,758 + ABZR86_RS07395 0.19 -0.3
1,629,758 + ABZR86_RS07395 0.19 -0.8
1,629,758 + ABZR86_RS07395 0.19 +0.2
1,629,759 - ABZR86_RS07395 0.19 -0.6
1,629,759 - ABZR86_RS07395 0.19 -0.1
1,629,759 - ABZR86_RS07395 0.19 -0.1
1,629,761 + ABZR86_RS07395 0.19 -0.4
1,629,860 + ABZR86_RS07395 0.24 -0.4
1,629,861 - ABZR86_RS07395 0.24 +0.1
1,629,861 - ABZR86_RS07395 0.24 -0.0
1,629,861 - ABZR86_RS07395 0.24 +1.0
1,629,869 - ABZR86_RS07395 0.24 -0.4

Or see this region's nucleotide sequence