Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05920

Experiment: D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05910 and ABZR86_RS05915 overlap by 4 nucleotidesABZR86_RS05915 and ABZR86_RS05920 are separated by 246 nucleotidesABZR86_RS05920 and ABZR86_RS05925 are separated by 6 nucleotides ABZR86_RS05910: ABZR86_RS05910 - cupin domain-containing protein, at 1,327,686 to 1,328,873 _RS05910 ABZR86_RS05915: ABZR86_RS05915 - hypothetical protein, at 1,328,870 to 1,329,373 _RS05915 ABZR86_RS05920: ABZR86_RS05920 - 2-oxoglutarate dehydrogenase E1 component, at 1,329,620 to 1,332,457 _RS05920 ABZR86_RS05925: ABZR86_RS05925 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 1,332,464 to 1,333,666 _RS05925 Position (kb) 1329 1330 1331 1332 1333Strain fitness (log2 ratio) -1 0 1at 1328.981 kb on + strand, within ABZR86_RS05915at 1328.982 kb on - strand, within ABZR86_RS05915at 1328.982 kb on - strand, within ABZR86_RS05915at 1328.982 kb on - strand, within ABZR86_RS05915at 1328.982 kb on - strand, within ABZR86_RS05915at 1329.008 kb on + strand, within ABZR86_RS05915at 1329.008 kb on + strand, within ABZR86_RS05915at 1329.008 kb on + strand, within ABZR86_RS05915at 1329.008 kb on + strand, within ABZR86_RS05915at 1329.008 kb on + strand, within ABZR86_RS05915at 1329.008 kb on + strand, within ABZR86_RS05915at 1329.009 kb on - strand, within ABZR86_RS05915at 1329.009 kb on - strand, within ABZR86_RS05915at 1329.010 kb on + strand, within ABZR86_RS05915at 1329.010 kb on + strand, within ABZR86_RS05915at 1329.010 kb on + strand, within ABZR86_RS05915at 1329.010 kb on + strand, within ABZR86_RS05915at 1329.011 kb on - strand, within ABZR86_RS05915at 1329.011 kb on - strand, within ABZR86_RS05915at 1329.011 kb on - strand, within ABZR86_RS05915at 1329.011 kb on - strand, within ABZR86_RS05915at 1329.011 kb on - strand, within ABZR86_RS05915at 1329.011 kb on - strand, within ABZR86_RS05915at 1329.011 kb on - strand, within ABZR86_RS05915at 1329.194 kb on + strand, within ABZR86_RS05915at 1329.231 kb on - strand, within ABZR86_RS05915at 1329.311 kb on + strand, within ABZR86_RS05915at 1329.311 kb on + strand, within ABZR86_RS05915at 1329.311 kb on + strand, within ABZR86_RS05915at 1329.311 kb on + strand, within ABZR86_RS05915at 1329.311 kb on + strand, within ABZR86_RS05915at 1329.311 kb on + strand, within ABZR86_RS05915at 1329.311 kb on + strand, within ABZR86_RS05915at 1329.311 kb on + strand, within ABZR86_RS05915at 1329.312 kb on - strand, within ABZR86_RS05915at 1329.312 kb on - strand, within ABZR86_RS05915at 1329.312 kb on - strand, within ABZR86_RS05915at 1329.312 kb on - strand, within ABZR86_RS05915at 1329.312 kb on - strand, within ABZR86_RS05915at 1329.372 kb on - strandat 1329.446 kb on + strandat 1329.446 kb on + strandat 1329.446 kb on + strandat 1329.479 kb on + strandat 1329.479 kb on + strandat 1329.479 kb on + strandat 1329.480 kb on - strandat 1329.480 kb on - strandat 1329.480 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
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1,328,981 + ABZR86_RS05915 0.22 +0.7
1,328,982 - ABZR86_RS05915 0.22 +0.7
1,328,982 - ABZR86_RS05915 0.22 -1.2
1,328,982 - ABZR86_RS05915 0.22 +0.1
1,328,982 - ABZR86_RS05915 0.22 +0.2
1,329,008 + ABZR86_RS05915 0.27 +0.3
1,329,008 + ABZR86_RS05915 0.27 +1.3
1,329,008 + ABZR86_RS05915 0.27 +1.0
1,329,008 + ABZR86_RS05915 0.27 +0.1
1,329,008 + ABZR86_RS05915 0.27 +0.1
1,329,008 + ABZR86_RS05915 0.27 -0.2
1,329,009 - ABZR86_RS05915 0.28 +0.4
1,329,009 - ABZR86_RS05915 0.28 +0.4
1,329,010 + ABZR86_RS05915 0.28 +0.8
1,329,010 + ABZR86_RS05915 0.28 +0.1
1,329,010 + ABZR86_RS05915 0.28 -0.0
1,329,010 + ABZR86_RS05915 0.28 -0.3
1,329,011 - ABZR86_RS05915 0.28 -1.1
1,329,011 - ABZR86_RS05915 0.28 +0.4
1,329,011 - ABZR86_RS05915 0.28 +0.4
1,329,011 - ABZR86_RS05915 0.28 +0.0
1,329,011 - ABZR86_RS05915 0.28 +0.6
1,329,011 - ABZR86_RS05915 0.28 -0.2
1,329,011 - ABZR86_RS05915 0.28 -0.4
1,329,194 + ABZR86_RS05915 0.64 -0.1
1,329,231 - ABZR86_RS05915 0.72 +0.1
1,329,311 + ABZR86_RS05915 0.88 +0.3
1,329,311 + ABZR86_RS05915 0.88 +0.4
1,329,311 + ABZR86_RS05915 0.88 +0.8
1,329,311 + ABZR86_RS05915 0.88 +0.6
1,329,311 + ABZR86_RS05915 0.88 +0.1
1,329,311 + ABZR86_RS05915 0.88 +0.3
1,329,311 + ABZR86_RS05915 0.88 -0.5
1,329,311 + ABZR86_RS05915 0.88 +0.7
1,329,312 - ABZR86_RS05915 0.88 +0.7
1,329,312 - ABZR86_RS05915 0.88 +0.7
1,329,312 - ABZR86_RS05915 0.88 +0.8
1,329,312 - ABZR86_RS05915 0.88 +0.3
1,329,312 - ABZR86_RS05915 0.88 -0.2
1,329,372 - +0.2
1,329,446 + +0.6
1,329,446 + +0.4
1,329,446 + +0.1
1,329,479 + +0.1
1,329,479 + -0.6
1,329,479 + -0.1
1,329,480 - +1.0
1,329,480 - +0.3
1,329,480 - +0.2

Or see this region's nucleotide sequence