Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05845

Experiment: D-Cycloserine 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS05840 and ABZR86_RS05845 are separated by 32 nucleotidesABZR86_RS05845 and ABZR86_RS05850 are separated by 107 nucleotidesABZR86_RS05850 and ABZR86_RS05855 are separated by 228 nucleotides ABZR86_RS05840: ABZR86_RS05840 - serine hydrolase domain-containing protein, at 1,310,497 to 1,311,744 _RS05840 ABZR86_RS05845: ABZR86_RS05845 - DUF2884 family protein, at 1,311,777 to 1,312,322 _RS05845 ABZR86_RS05850: ABZR86_RS05850 - dihydrofolate reductase family protein, at 1,312,430 to 1,313,011 _RS05850 ABZR86_RS05855: ABZR86_RS05855 - class II fumarate hydratase, at 1,313,240 to 1,314,637 _RS05855 Position (kb) 1311 1312 1313Strain fitness (log2 ratio) -1 0 1at 1310.785 kb on + strand, within ABZR86_RS05840at 1310.785 kb on + strand, within ABZR86_RS05840at 1310.786 kb on - strand, within ABZR86_RS05840at 1310.786 kb on - strand, within ABZR86_RS05840at 1310.879 kb on - strand, within ABZR86_RS05840at 1310.965 kb on + strand, within ABZR86_RS05840at 1310.966 kb on - strand, within ABZR86_RS05840at 1310.966 kb on - strand, within ABZR86_RS05840at 1310.989 kb on + strand, within ABZR86_RS05840at 1310.989 kb on + strand, within ABZR86_RS05840at 1310.989 kb on + strand, within ABZR86_RS05840at 1310.990 kb on - strand, within ABZR86_RS05840at 1310.990 kb on - strand, within ABZR86_RS05840at 1310.990 kb on - strand, within ABZR86_RS05840at 1311.017 kb on - strand, within ABZR86_RS05840at 1311.017 kb on - strand, within ABZR86_RS05840at 1311.044 kb on - strand, within ABZR86_RS05840at 1311.044 kb on - strand, within ABZR86_RS05840at 1311.595 kb on + strand, within ABZR86_RS05840at 1311.595 kb on + strand, within ABZR86_RS05840at 1311.596 kb on - strand, within ABZR86_RS05840at 1311.596 kb on - strand, within ABZR86_RS05840at 1311.596 kb on - strand, within ABZR86_RS05840at 1311.596 kb on - strand, within ABZR86_RS05840at 1311.596 kb on - strand, within ABZR86_RS05840at 1311.601 kb on + strand, within ABZR86_RS05840at 1311.601 kb on + strand, within ABZR86_RS05840at 1311.601 kb on + strand, within ABZR86_RS05840at 1311.602 kb on - strand, within ABZR86_RS05840at 1311.635 kb on - strandat 1311.635 kb on - strandat 1311.657 kb on + strandat 1311.664 kb on + strandat 1311.665 kb on - strandat 1311.774 kb on + strandat 1311.774 kb on + strandat 1311.774 kb on + strandat 1311.774 kb on + strandat 1311.774 kb on + strandat 1311.774 kb on + strandat 1311.774 kb on + strandat 1311.774 kb on + strandat 1311.775 kb on - strandat 1311.775 kb on - strandat 1311.775 kb on - strandat 1311.775 kb on - strandat 1311.775 kb on - strandat 1311.846 kb on + strand, within ABZR86_RS05845at 1311.846 kb on + strand, within ABZR86_RS05845at 1311.846 kb on + strand, within ABZR86_RS05845at 1311.847 kb on - strand, within ABZR86_RS05845at 1311.847 kb on - strand, within ABZR86_RS05845at 1311.847 kb on - strand, within ABZR86_RS05845at 1311.847 kb on - strand, within ABZR86_RS05845at 1311.847 kb on - strand, within ABZR86_RS05845at 1311.847 kb on - strand, within ABZR86_RS05845at 1311.847 kb on - strand, within ABZR86_RS05845at 1311.847 kb on - strand, within ABZR86_RS05845at 1311.848 kb on + strand, within ABZR86_RS05845at 1311.848 kb on + strand, within ABZR86_RS05845at 1311.848 kb on + strand, within ABZR86_RS05845at 1311.848 kb on + strand, within ABZR86_RS05845at 1311.849 kb on - strand, within ABZR86_RS05845at 1311.849 kb on - strand, within ABZR86_RS05845at 1312.006 kb on - strand, within ABZR86_RS05845at 1312.008 kb on + strand, within ABZR86_RS05845at 1312.008 kb on + strand, within ABZR86_RS05845at 1312.009 kb on - strand, within ABZR86_RS05845at 1312.009 kb on - strand, within ABZR86_RS05845at 1312.009 kb on - strand, within ABZR86_RS05845at 1312.421 kb on + strandat 1312.421 kb on + strandat 1312.421 kb on + strandat 1312.421 kb on + strandat 1312.431 kb on + strandat 1312.848 kb on + strand, within ABZR86_RS05850at 1312.848 kb on + strand, within ABZR86_RS05850at 1312.849 kb on - strand, within ABZR86_RS05850at 1312.968 kb on + strandat 1312.968 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
remove
1,310,785 + ABZR86_RS05840 0.23 +0.7
1,310,785 + ABZR86_RS05840 0.23 -0.5
1,310,786 - ABZR86_RS05840 0.23 +0.2
1,310,786 - ABZR86_RS05840 0.23 +0.4
1,310,879 - ABZR86_RS05840 0.31 +1.1
1,310,965 + ABZR86_RS05840 0.38 -0.4
1,310,966 - ABZR86_RS05840 0.38 +0.1
1,310,966 - ABZR86_RS05840 0.38 +0.6
1,310,989 + ABZR86_RS05840 0.39 +0.3
1,310,989 + ABZR86_RS05840 0.39 -0.1
1,310,989 + ABZR86_RS05840 0.39 -0.6
1,310,990 - ABZR86_RS05840 0.40 +0.4
1,310,990 - ABZR86_RS05840 0.40 -1.7
1,310,990 - ABZR86_RS05840 0.40 +0.6
1,311,017 - ABZR86_RS05840 0.42 +0.0
1,311,017 - ABZR86_RS05840 0.42 +0.7
1,311,044 - ABZR86_RS05840 0.44 +0.6
1,311,044 - ABZR86_RS05840 0.44 -0.7
1,311,595 + ABZR86_RS05840 0.88 +0.3
1,311,595 + ABZR86_RS05840 0.88 -0.3
1,311,596 - ABZR86_RS05840 0.88 -0.2
1,311,596 - ABZR86_RS05840 0.88 +0.2
1,311,596 - ABZR86_RS05840 0.88 +0.5
1,311,596 - ABZR86_RS05840 0.88 +0.6
1,311,596 - ABZR86_RS05840 0.88 -1.6
1,311,601 + ABZR86_RS05840 0.88 -0.3
1,311,601 + ABZR86_RS05840 0.88 -0.6
1,311,601 + ABZR86_RS05840 0.88 +0.1
1,311,602 - ABZR86_RS05840 0.89 +0.8
1,311,635 - +0.2
1,311,635 - +0.7
1,311,657 + +0.2
1,311,664 + +0.1
1,311,665 - +0.1
1,311,774 + +0.2
1,311,774 + +0.2
1,311,774 + +0.2
1,311,774 + +0.4
1,311,774 + -0.4
1,311,774 + -0.8
1,311,774 + +0.3
1,311,774 + -0.1
1,311,775 - -0.8
1,311,775 - -0.2
1,311,775 - -0.0
1,311,775 - -0.0
1,311,775 - -0.2
1,311,846 + ABZR86_RS05845 0.13 -0.7
1,311,846 + ABZR86_RS05845 0.13 -0.4
1,311,846 + ABZR86_RS05845 0.13 -0.1
1,311,847 - ABZR86_RS05845 0.13 +0.2
1,311,847 - ABZR86_RS05845 0.13 -0.2
1,311,847 - ABZR86_RS05845 0.13 +0.1
1,311,847 - ABZR86_RS05845 0.13 +0.4
1,311,847 - ABZR86_RS05845 0.13 -0.7
1,311,847 - ABZR86_RS05845 0.13 -1.1
1,311,847 - ABZR86_RS05845 0.13 +0.3
1,311,847 - ABZR86_RS05845 0.13 +0.3
1,311,848 + ABZR86_RS05845 0.13 +1.1
1,311,848 + ABZR86_RS05845 0.13 -0.2
1,311,848 + ABZR86_RS05845 0.13 -0.4
1,311,848 + ABZR86_RS05845 0.13 +1.0
1,311,849 - ABZR86_RS05845 0.13 -0.2
1,311,849 - ABZR86_RS05845 0.13 -0.9
1,312,006 - ABZR86_RS05845 0.42 -0.1
1,312,008 + ABZR86_RS05845 0.42 +0.1
1,312,008 + ABZR86_RS05845 0.42 -1.3
1,312,009 - ABZR86_RS05845 0.42 +0.6
1,312,009 - ABZR86_RS05845 0.42 +0.1
1,312,009 - ABZR86_RS05845 0.42 -0.9
1,312,421 + -0.3
1,312,421 + +0.0
1,312,421 + -0.2
1,312,421 + +0.3
1,312,431 + +0.4
1,312,848 + ABZR86_RS05850 0.72 +0.2
1,312,848 + ABZR86_RS05850 0.72 +0.4
1,312,849 - ABZR86_RS05850 0.72 -0.5
1,312,968 + +0.6
1,312,968 + +0.3

Or see this region's nucleotide sequence