Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05835

Experiment: D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05830 and ABZR86_RS05835 are separated by 78 nucleotidesABZR86_RS05835 and ABZR86_RS05840 are separated by 211 nucleotides ABZR86_RS05830: ABZR86_RS05830 - ABC-2 transporter permease, at 1,308,552 to 1,309,523 _RS05830 ABZR86_RS05835: ABZR86_RS05835 - hypothetical protein, at 1,309,602 to 1,310,285 _RS05835 ABZR86_RS05840: ABZR86_RS05840 - serine hydrolase domain-containing protein, at 1,310,497 to 1,311,744 _RS05840 Position (kb) 1309 1310 1311Strain fitness (log2 ratio) -1 0 1at 1308.679 kb on + strand, within ABZR86_RS05830at 1308.679 kb on + strand, within ABZR86_RS05830at 1308.679 kb on + strand, within ABZR86_RS05830at 1308.843 kb on + strand, within ABZR86_RS05830at 1308.862 kb on - strand, within ABZR86_RS05830at 1309.119 kb on + strand, within ABZR86_RS05830at 1309.119 kb on + strand, within ABZR86_RS05830at 1309.120 kb on - strand, within ABZR86_RS05830at 1309.120 kb on - strand, within ABZR86_RS05830at 1309.422 kb on + strand, within ABZR86_RS05830at 1309.422 kb on + strand, within ABZR86_RS05830at 1309.423 kb on - strand, within ABZR86_RS05830at 1309.423 kb on - strand, within ABZR86_RS05830at 1309.974 kb on + strand, within ABZR86_RS05835at 1310.227 kb on - strandat 1310.327 kb on - strandat 1310.327 kb on - strandat 1310.401 kb on - strandat 1310.607 kb on + strandat 1310.608 kb on - strandat 1310.699 kb on - strand, within ABZR86_RS05840at 1310.752 kb on + strand, within ABZR86_RS05840at 1310.752 kb on + strand, within ABZR86_RS05840at 1310.752 kb on + strand, within ABZR86_RS05840at 1310.752 kb on + strand, within ABZR86_RS05840at 1310.752 kb on + strand, within ABZR86_RS05840at 1310.753 kb on - strand, within ABZR86_RS05840at 1310.785 kb on + strand, within ABZR86_RS05840at 1310.785 kb on + strand, within ABZR86_RS05840at 1310.786 kb on - strand, within ABZR86_RS05840at 1310.786 kb on - strand, within ABZR86_RS05840at 1310.879 kb on - strand, within ABZR86_RS05840at 1310.965 kb on + strand, within ABZR86_RS05840at 1310.966 kb on - strand, within ABZR86_RS05840at 1310.966 kb on - strand, within ABZR86_RS05840at 1310.989 kb on + strand, within ABZR86_RS05840at 1310.989 kb on + strand, within ABZR86_RS05840at 1310.989 kb on + strand, within ABZR86_RS05840at 1310.990 kb on - strand, within ABZR86_RS05840at 1310.990 kb on - strand, within ABZR86_RS05840at 1310.990 kb on - strand, within ABZR86_RS05840at 1311.017 kb on - strand, within ABZR86_RS05840at 1311.017 kb on - strand, within ABZR86_RS05840at 1311.044 kb on - strand, within ABZR86_RS05840at 1311.044 kb on - strand, within ABZR86_RS05840

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
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1,308,679 + ABZR86_RS05830 0.13 -0.5
1,308,679 + ABZR86_RS05830 0.13 -0.0
1,308,679 + ABZR86_RS05830 0.13 -0.9
1,308,843 + ABZR86_RS05830 0.30 -0.3
1,308,862 - ABZR86_RS05830 0.32 +0.5
1,309,119 + ABZR86_RS05830 0.58 -0.4
1,309,119 + ABZR86_RS05830 0.58 -0.1
1,309,120 - ABZR86_RS05830 0.58 -1.3
1,309,120 - ABZR86_RS05830 0.58 -0.5
1,309,422 + ABZR86_RS05830 0.90 +0.4
1,309,422 + ABZR86_RS05830 0.90 -0.1
1,309,423 - ABZR86_RS05830 0.90 -0.2
1,309,423 - ABZR86_RS05830 0.90 -0.1
1,309,974 + ABZR86_RS05835 0.54 +0.0
1,310,227 - -0.1
1,310,327 - -0.3
1,310,327 - +1.6
1,310,401 - -0.1
1,310,607 + +0.6
1,310,608 - -0.3
1,310,699 - ABZR86_RS05840 0.16 -0.3
1,310,752 + ABZR86_RS05840 0.20 -0.1
1,310,752 + ABZR86_RS05840 0.20 -0.4
1,310,752 + ABZR86_RS05840 0.20 -0.5
1,310,752 + ABZR86_RS05840 0.20 +0.3
1,310,752 + ABZR86_RS05840 0.20 -0.0
1,310,753 - ABZR86_RS05840 0.21 -0.1
1,310,785 + ABZR86_RS05840 0.23 +0.7
1,310,785 + ABZR86_RS05840 0.23 -0.5
1,310,786 - ABZR86_RS05840 0.23 +0.2
1,310,786 - ABZR86_RS05840 0.23 +0.4
1,310,879 - ABZR86_RS05840 0.31 +1.1
1,310,965 + ABZR86_RS05840 0.38 -0.4
1,310,966 - ABZR86_RS05840 0.38 +0.1
1,310,966 - ABZR86_RS05840 0.38 +0.6
1,310,989 + ABZR86_RS05840 0.39 +0.3
1,310,989 + ABZR86_RS05840 0.39 -0.1
1,310,989 + ABZR86_RS05840 0.39 -0.6
1,310,990 - ABZR86_RS05840 0.40 +0.4
1,310,990 - ABZR86_RS05840 0.40 -1.7
1,310,990 - ABZR86_RS05840 0.40 +0.6
1,311,017 - ABZR86_RS05840 0.42 +0.0
1,311,017 - ABZR86_RS05840 0.42 +0.7
1,311,044 - ABZR86_RS05840 0.44 +0.6
1,311,044 - ABZR86_RS05840 0.44 -0.7

Or see this region's nucleotide sequence