Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS03945

Experiment: D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS03940 and ABZR86_RS03945 are separated by 133 nucleotidesABZR86_RS03945 and ABZR86_RS03950 are separated by 89 nucleotidesABZR86_RS03950 and ABZR86_RS03955 are separated by 202 nucleotides ABZR86_RS03940: ABZR86_RS03940 - VOC family protein, at 863,111 to 864,097 _RS03940 ABZR86_RS03945: ABZR86_RS03945 - GlxA family transcriptional regulator, at 864,231 to 865,166 _RS03945 ABZR86_RS03950: ABZR86_RS03950 - RidA family protein, at 865,256 to 865,717 _RS03950 ABZR86_RS03955: ABZR86_RS03955 - DEAD/DEAH box helicase, at 865,920 to 868,328 _RS03955 Position (kb) 864 865 866Strain fitness (log2 ratio) -2 -1 0 1at 863.496 kb on - strand, within ABZR86_RS03940at 863.496 kb on - strand, within ABZR86_RS03940at 863.496 kb on - strand, within ABZR86_RS03940at 863.593 kb on - strand, within ABZR86_RS03940at 863.604 kb on + strand, within ABZR86_RS03940at 863.604 kb on + strand, within ABZR86_RS03940at 863.604 kb on + strand, within ABZR86_RS03940at 863.604 kb on + strand, within ABZR86_RS03940at 863.604 kb on + strand, within ABZR86_RS03940at 863.605 kb on - strand, within ABZR86_RS03940at 863.605 kb on - strand, within ABZR86_RS03940at 863.605 kb on - strand, within ABZR86_RS03940at 863.605 kb on - strand, within ABZR86_RS03940at 863.605 kb on - strand, within ABZR86_RS03940at 863.620 kb on + strand, within ABZR86_RS03940at 863.620 kb on + strand, within ABZR86_RS03940at 863.621 kb on - strand, within ABZR86_RS03940at 863.709 kb on + strand, within ABZR86_RS03940at 863.709 kb on + strand, within ABZR86_RS03940at 863.890 kb on - strand, within ABZR86_RS03940at 863.890 kb on - strand, within ABZR86_RS03940at 863.890 kb on - strand, within ABZR86_RS03940at 863.890 kb on - strand, within ABZR86_RS03940at 864.101 kb on + strandat 864.102 kb on - strandat 864.102 kb on - strandat 864.166 kb on + strandat 864.336 kb on - strand, within ABZR86_RS03945at 864.580 kb on + strand, within ABZR86_RS03945at 864.770 kb on - strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.061 kb on - strand, within ABZR86_RS03945at 865.061 kb on - strand, within ABZR86_RS03945at 865.061 kb on - strand, within ABZR86_RS03945at 865.061 kb on - strand, within ABZR86_RS03945at 865.359 kb on + strand, within ABZR86_RS03950at 865.359 kb on + strand, within ABZR86_RS03950at 865.359 kb on + strand, within ABZR86_RS03950at 865.359 kb on + strand, within ABZR86_RS03950at 865.360 kb on - strand, within ABZR86_RS03950at 865.360 kb on - strand, within ABZR86_RS03950at 865.360 kb on - strand, within ABZR86_RS03950at 865.369 kb on - strand, within ABZR86_RS03950at 865.557 kb on + strand, within ABZR86_RS03950at 865.558 kb on - strand, within ABZR86_RS03950at 865.558 kb on - strand, within ABZR86_RS03950at 865.558 kb on - strand, within ABZR86_RS03950at 865.706 kb on - strandat 865.706 kb on - strandat 865.746 kb on - strandat 865.842 kb on + strandat 866.016 kb on + strandat 866.016 kb on + strandat 866.067 kb on + strandat 866.067 kb on + strandat 866.067 kb on + strandat 866.068 kb on - strandat 866.068 kb on - strandat 866.068 kb on - strandat 866.068 kb on - strandat 866.068 kb on - strandat 866.071 kb on + strandat 866.071 kb on + strandat 866.071 kb on + strandat 866.072 kb on - strandat 866.139 kb on + strandat 866.139 kb on + strandat 866.139 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
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863,496 - ABZR86_RS03940 0.39 +0.6
863,496 - ABZR86_RS03940 0.39 +0.2
863,496 - ABZR86_RS03940 0.39 -0.2
863,593 - ABZR86_RS03940 0.49 -0.1
863,604 + ABZR86_RS03940 0.50 +0.4
863,604 + ABZR86_RS03940 0.50 +0.2
863,604 + ABZR86_RS03940 0.50 +0.1
863,604 + ABZR86_RS03940 0.50 -0.4
863,604 + ABZR86_RS03940 0.50 -0.1
863,605 - ABZR86_RS03940 0.50 +0.2
863,605 - ABZR86_RS03940 0.50 -0.5
863,605 - ABZR86_RS03940 0.50 +0.2
863,605 - ABZR86_RS03940 0.50 +0.1
863,605 - ABZR86_RS03940 0.50 +0.3
863,620 + ABZR86_RS03940 0.52 +0.4
863,620 + ABZR86_RS03940 0.52 -0.3
863,621 - ABZR86_RS03940 0.52 +0.5
863,709 + ABZR86_RS03940 0.61 -0.0
863,709 + ABZR86_RS03940 0.61 -0.6
863,890 - ABZR86_RS03940 0.79 -0.3
863,890 - ABZR86_RS03940 0.79 +0.2
863,890 - ABZR86_RS03940 0.79 -1.1
863,890 - ABZR86_RS03940 0.79 +0.4
864,101 + +0.2
864,102 - -0.0
864,102 - +0.7
864,166 + +0.4
864,336 - ABZR86_RS03945 0.11 +0.5
864,580 + ABZR86_RS03945 0.37 -0.2
864,770 - ABZR86_RS03945 0.58 +0.6
865,060 + ABZR86_RS03945 0.89 +0.1
865,060 + ABZR86_RS03945 0.89 +0.2
865,060 + ABZR86_RS03945 0.89 -1.3
865,060 + ABZR86_RS03945 0.89 +1.6
865,060 + ABZR86_RS03945 0.89 -0.4
865,060 + ABZR86_RS03945 0.89 +0.1
865,060 + ABZR86_RS03945 0.89 +0.0
865,060 + ABZR86_RS03945 0.89 -0.2
865,060 + ABZR86_RS03945 0.89 +0.4
865,060 + ABZR86_RS03945 0.89 +0.6
865,060 + ABZR86_RS03945 0.89 +0.2
865,061 - ABZR86_RS03945 0.89 +0.2
865,061 - ABZR86_RS03945 0.89 +0.6
865,061 - ABZR86_RS03945 0.89 +0.4
865,061 - ABZR86_RS03945 0.89 -0.1
865,359 + ABZR86_RS03950 0.22 -0.1
865,359 + ABZR86_RS03950 0.22 -0.3
865,359 + ABZR86_RS03950 0.22 -0.2
865,359 + ABZR86_RS03950 0.22 -0.3
865,360 - ABZR86_RS03950 0.23 -0.4
865,360 - ABZR86_RS03950 0.23 -0.0
865,360 - ABZR86_RS03950 0.23 -1.9
865,369 - ABZR86_RS03950 0.24 +0.7
865,557 + ABZR86_RS03950 0.65 -0.3
865,558 - ABZR86_RS03950 0.65 -0.5
865,558 - ABZR86_RS03950 0.65 +0.2
865,558 - ABZR86_RS03950 0.65 +0.7
865,706 - +0.2
865,706 - -0.4
865,746 - +0.3
865,842 + -0.5
866,016 + -0.5
866,016 + -1.3
866,067 + +0.2
866,067 + -0.3
866,067 + -0.3
866,068 - -1.5
866,068 - -0.2
866,068 - +0.6
866,068 - +0.4
866,068 - +0.1
866,071 + +0.1
866,071 + -0.3
866,071 + +0.4
866,072 - +0.4
866,139 + -0.3
866,139 + +1.1
866,139 + +0.1

Or see this region's nucleotide sequence