Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS03240

Experiment: D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS03230 and ABZR86_RS03235 are separated by 19 nucleotidesABZR86_RS03235 and ABZR86_RS03240 are separated by 19 nucleotidesABZR86_RS03240 and ABZR86_RS03245 are separated by 77 nucleotidesABZR86_RS03245 and ABZR86_RS03250 are separated by 271 nucleotidesABZR86_RS03250 and ABZR86_RS03255 are separated by 17 nucleotides ABZR86_RS03230: ABZR86_RS03230 - ornithine cyclodeaminase family protein, at 674,897 to 675,862 _RS03230 ABZR86_RS03235: ABZR86_RS03235 - cytochrome P460 family protein, at 675,882 to 676,391 _RS03235 ABZR86_RS03240: ABZR86_RS03240 - alpha/beta hydrolase, at 676,411 to 677,472 _RS03240 ABZR86_RS03245: ABZR86_RS03245 - hypothetical protein, at 677,550 to 677,846 _RS03245 ABZR86_RS03250: ABZR86_RS03250 - type II toxin-antitoxin system RelE/ParE family toxin, at 678,118 to 678,408 _RS03250 ABZR86_RS03255: ABZR86_RS03255 - addiction module antidote protein, at 678,426 to 678,830 _RS03255 Position (kb) 676 677 678Strain fitness (log2 ratio) -1 0 1at 675.635 kb on + strand, within ABZR86_RS03230at 675.635 kb on + strand, within ABZR86_RS03230at 675.636 kb on - strand, within ABZR86_RS03230at 675.636 kb on - strand, within ABZR86_RS03230at 675.818 kb on + strandat 675.819 kb on - strandat 675.840 kb on - strandat 675.851 kb on + strandat 675.851 kb on + strandat 675.893 kb on - strandat 675.943 kb on + strand, within ABZR86_RS03235at 675.944 kb on - strand, within ABZR86_RS03235at 675.944 kb on - strand, within ABZR86_RS03235at 675.944 kb on - strand, within ABZR86_RS03235at 675.998 kb on - strand, within ABZR86_RS03235at 676.021 kb on + strand, within ABZR86_RS03235at 676.021 kb on + strand, within ABZR86_RS03235at 676.022 kb on - strand, within ABZR86_RS03235at 676.282 kb on + strand, within ABZR86_RS03235at 676.283 kb on - strand, within ABZR86_RS03235at 676.385 kb on + strandat 676.385 kb on + strandat 676.385 kb on + strandat 676.433 kb on - strandat 676.508 kb on + strandat 676.508 kb on + strandat 676.509 kb on - strandat 676.509 kb on - strandat 676.676 kb on + strand, within ABZR86_RS03240at 676.806 kb on - strand, within ABZR86_RS03240at 676.815 kb on - strand, within ABZR86_RS03240at 676.853 kb on + strand, within ABZR86_RS03240at 676.853 kb on + strand, within ABZR86_RS03240at 676.854 kb on - strand, within ABZR86_RS03240at 676.919 kb on + strand, within ABZR86_RS03240at 677.132 kb on + strand, within ABZR86_RS03240at 677.186 kb on + strand, within ABZR86_RS03240at 677.187 kb on - strand, within ABZR86_RS03240at 677.192 kb on + strand, within ABZR86_RS03240at 677.192 kb on + strand, within ABZR86_RS03240at 677.192 kb on + strand, within ABZR86_RS03240at 677.193 kb on - strand, within ABZR86_RS03240at 677.193 kb on - strand, within ABZR86_RS03240at 677.193 kb on - strand, within ABZR86_RS03240at 677.193 kb on - strand, within ABZR86_RS03240at 677.193 kb on - strand, within ABZR86_RS03240at 677.193 kb on - strand, within ABZR86_RS03240at 677.202 kb on - strand, within ABZR86_RS03240at 677.861 kb on + strandat 677.925 kb on + strandat 677.978 kb on + strandat 677.979 kb on - strandat 677.979 kb on - strandat 677.979 kb on - strandat 678.244 kb on + strand, within ABZR86_RS03250at 678.244 kb on + strand, within ABZR86_RS03250at 678.298 kb on + strand, within ABZR86_RS03250at 678.299 kb on - strand, within ABZR86_RS03250at 678.299 kb on - strand, within ABZR86_RS03250at 678.325 kb on + strand, within ABZR86_RS03250at 678.326 kb on - strand, within ABZR86_RS03250

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
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675,635 + ABZR86_RS03230 0.76 +0.5
675,635 + ABZR86_RS03230 0.76 -0.4
675,636 - ABZR86_RS03230 0.77 -0.1
675,636 - ABZR86_RS03230 0.77 -0.0
675,818 + -0.3
675,819 - -0.7
675,840 - +0.0
675,851 + -0.6
675,851 + +0.0
675,893 - -0.1
675,943 + ABZR86_RS03235 0.12 +0.2
675,944 - ABZR86_RS03235 0.12 -0.0
675,944 - ABZR86_RS03235 0.12 +0.6
675,944 - ABZR86_RS03235 0.12 +0.3
675,998 - ABZR86_RS03235 0.23 -1.0
676,021 + ABZR86_RS03235 0.27 +0.4
676,021 + ABZR86_RS03235 0.27 -0.2
676,022 - ABZR86_RS03235 0.27 -0.2
676,282 + ABZR86_RS03235 0.78 +0.3
676,283 - ABZR86_RS03235 0.79 +0.3
676,385 + -0.1
676,385 + -0.1
676,385 + +0.1
676,433 - -0.2
676,508 + -0.1
676,508 + +0.1
676,509 - -0.4
676,509 - -0.1
676,676 + ABZR86_RS03240 0.25 -0.4
676,806 - ABZR86_RS03240 0.37 -0.1
676,815 - ABZR86_RS03240 0.38 -0.3
676,853 + ABZR86_RS03240 0.42 -0.4
676,853 + ABZR86_RS03240 0.42 +0.1
676,854 - ABZR86_RS03240 0.42 +0.1
676,919 + ABZR86_RS03240 0.48 +0.1
677,132 + ABZR86_RS03240 0.68 -0.4
677,186 + ABZR86_RS03240 0.73 -0.4
677,187 - ABZR86_RS03240 0.73 +1.1
677,192 + ABZR86_RS03240 0.74 -0.2
677,192 + ABZR86_RS03240 0.74 +0.5
677,192 + ABZR86_RS03240 0.74 -1.5
677,193 - ABZR86_RS03240 0.74 -0.1
677,193 - ABZR86_RS03240 0.74 -0.3
677,193 - ABZR86_RS03240 0.74 -0.9
677,193 - ABZR86_RS03240 0.74 +0.5
677,193 - ABZR86_RS03240 0.74 -0.4
677,193 - ABZR86_RS03240 0.74 -0.2
677,202 - ABZR86_RS03240 0.74 -1.1
677,861 + +0.9
677,925 + +0.3
677,978 + -0.6
677,979 - +0.0
677,979 - -0.4
677,979 - -0.4
678,244 + ABZR86_RS03250 0.43 -0.8
678,244 + ABZR86_RS03250 0.43 -0.2
678,298 + ABZR86_RS03250 0.62 -0.3
678,299 - ABZR86_RS03250 0.62 +0.1
678,299 - ABZR86_RS03250 0.62 +0.2
678,325 + ABZR86_RS03250 0.71 -0.9
678,326 - ABZR86_RS03250 0.71 +0.7

Or see this region's nucleotide sequence