Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01515

Experiment: D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01510 and ABZR86_RS01515 are separated by 143 nucleotidesABZR86_RS01515 and ABZR86_RS01520 are separated by 736 nucleotides ABZR86_RS01510: ABZR86_RS01510 - DUF4434 domain-containing protein, at 328,364 to 329,260 _RS01510 ABZR86_RS01515: ABZR86_RS01515 - hypothetical protein, at 329,404 to 330,375 _RS01515 ABZR86_RS01520: ABZR86_RS01520 - alpha-L-arabinofuranosidase C-terminal domain-containing protein, at 331,112 to 332,626 _RS01520 Position (kb) 329 330 331Strain fitness (log2 ratio) -3 -2 -1 0 1at 328.714 kb on + strand, within ABZR86_RS01510at 328.714 kb on + strand, within ABZR86_RS01510at 328.715 kb on - strand, within ABZR86_RS01510at 328.715 kb on - strand, within ABZR86_RS01510at 328.715 kb on - strand, within ABZR86_RS01510at 328.715 kb on - strand, within ABZR86_RS01510at 328.791 kb on - strand, within ABZR86_RS01510at 328.857 kb on - strand, within ABZR86_RS01510at 328.907 kb on + strand, within ABZR86_RS01510at 328.907 kb on + strand, within ABZR86_RS01510at 328.907 kb on + strand, within ABZR86_RS01510at 328.908 kb on - strand, within ABZR86_RS01510at 328.949 kb on + strand, within ABZR86_RS01510at 328.949 kb on + strand, within ABZR86_RS01510at 329.048 kb on + strand, within ABZR86_RS01510at 329.048 kb on + strand, within ABZR86_RS01510at 329.049 kb on - strand, within ABZR86_RS01510at 329.099 kb on + strand, within ABZR86_RS01510at 329.099 kb on + strand, within ABZR86_RS01510at 329.100 kb on - strand, within ABZR86_RS01510at 329.100 kb on - strand, within ABZR86_RS01510at 329.203 kb on + strandat 329.204 kb on - strandat 329.386 kb on + strandat 329.386 kb on + strandat 329.387 kb on - strandat 329.387 kb on - strandat 329.387 kb on - strandat 329.405 kb on + strandat 329.406 kb on - strandat 329.453 kb on + strandat 329.454 kb on - strandat 329.454 kb on - strandat 329.465 kb on + strandat 329.466 kb on - strandat 329.466 kb on - strandat 329.487 kb on - strandat 329.546 kb on + strand, within ABZR86_RS01515at 329.549 kb on + strand, within ABZR86_RS01515at 329.549 kb on + strand, within ABZR86_RS01515at 329.549 kb on + strand, within ABZR86_RS01515at 329.550 kb on - strand, within ABZR86_RS01515at 329.700 kb on - strand, within ABZR86_RS01515at 329.708 kb on + strand, within ABZR86_RS01515at 329.708 kb on + strand, within ABZR86_RS01515at 329.708 kb on + strand, within ABZR86_RS01515at 329.708 kb on + strand, within ABZR86_RS01515at 329.709 kb on - strand, within ABZR86_RS01515at 329.828 kb on + strand, within ABZR86_RS01515at 329.829 kb on - strand, within ABZR86_RS01515at 329.829 kb on - strand, within ABZR86_RS01515at 329.829 kb on - strand, within ABZR86_RS01515at 329.829 kb on - strand, within ABZR86_RS01515at 329.831 kb on + strand, within ABZR86_RS01515at 329.832 kb on - strand, within ABZR86_RS01515at 330.041 kb on + strand, within ABZR86_RS01515at 330.042 kb on - strand, within ABZR86_RS01515at 330.042 kb on - strand, within ABZR86_RS01515at 330.045 kb on + strand, within ABZR86_RS01515at 330.045 kb on + strand, within ABZR86_RS01515at 330.046 kb on - strand, within ABZR86_RS01515at 330.046 kb on - strand, within ABZR86_RS01515at 330.046 kb on - strand, within ABZR86_RS01515at 330.065 kb on + strand, within ABZR86_RS01515at 330.066 kb on - strand, within ABZR86_RS01515at 330.066 kb on - strand, within ABZR86_RS01515at 330.068 kb on + strand, within ABZR86_RS01515at 330.068 kb on + strand, within ABZR86_RS01515at 330.096 kb on - strand, within ABZR86_RS01515at 330.128 kb on + strand, within ABZR86_RS01515at 330.129 kb on - strand, within ABZR86_RS01515at 330.205 kb on - strand, within ABZR86_RS01515at 330.205 kb on - strand, within ABZR86_RS01515at 330.317 kb on + strandat 330.449 kb on + strandat 330.449 kb on + strandat 330.449 kb on + strandat 330.450 kb on - strandat 330.450 kb on - strandat 330.450 kb on - strandat 330.450 kb on - strandat 330.450 kb on - strandat 330.522 kb on + strandat 330.522 kb on + strandat 330.522 kb on + strandat 330.523 kb on - strandat 330.679 kb on + strandat 330.679 kb on + strandat 330.679 kb on + strandat 330.726 kb on - strandat 330.798 kb on + strandat 330.798 kb on + strandat 330.798 kb on + strandat 330.799 kb on - strandat 330.823 kb on - strandat 330.823 kb on - strandat 330.823 kb on - strandat 330.836 kb on + strandat 330.885 kb on - strandat 330.916 kb on + strandat 330.916 kb on + strandat 330.916 kb on + strandat 330.917 kb on - strandat 330.917 kb on - strandat 330.917 kb on - strandat 330.917 kb on - strandat 330.945 kb on - strandat 330.971 kb on + strandat 330.971 kb on + strandat 330.972 kb on - strandat 331.165 kb on - strandat 331.367 kb on + strand, within ABZR86_RS01520at 331.368 kb on - strand, within ABZR86_RS01520at 331.368 kb on - strand, within ABZR86_RS01520

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
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328,714 + ABZR86_RS01510 0.39 -0.1
328,714 + ABZR86_RS01510 0.39 +0.0
328,715 - ABZR86_RS01510 0.39 +0.3
328,715 - ABZR86_RS01510 0.39 -1.1
328,715 - ABZR86_RS01510 0.39 +0.7
328,715 - ABZR86_RS01510 0.39 -0.5
328,791 - ABZR86_RS01510 0.48 +0.2
328,857 - ABZR86_RS01510 0.55 +0.0
328,907 + ABZR86_RS01510 0.61 +0.3
328,907 + ABZR86_RS01510 0.61 -0.1
328,907 + ABZR86_RS01510 0.61 +0.4
328,908 - ABZR86_RS01510 0.61 -0.1
328,949 + ABZR86_RS01510 0.65 -1.3
328,949 + ABZR86_RS01510 0.65 -0.5
329,048 + ABZR86_RS01510 0.76 -0.9
329,048 + ABZR86_RS01510 0.76 +0.5
329,049 - ABZR86_RS01510 0.76 -0.6
329,099 + ABZR86_RS01510 0.82 -0.1
329,099 + ABZR86_RS01510 0.82 -0.7
329,100 - ABZR86_RS01510 0.82 +0.0
329,100 - ABZR86_RS01510 0.82 -1.3
329,203 + +0.2
329,204 - +0.0
329,386 + -0.9
329,386 + -0.1
329,387 - +0.3
329,387 - -0.8
329,387 - -0.0
329,405 + +0.1
329,406 - -0.1
329,453 + -0.2
329,454 - -0.1
329,454 - +1.1
329,465 + +0.4
329,466 - +0.0
329,466 - +0.3
329,487 - +0.2
329,546 + ABZR86_RS01515 0.15 -0.5
329,549 + ABZR86_RS01515 0.15 +0.4
329,549 + ABZR86_RS01515 0.15 -0.1
329,549 + ABZR86_RS01515 0.15 +0.5
329,550 - ABZR86_RS01515 0.15 +1.4
329,700 - ABZR86_RS01515 0.30 -0.1
329,708 + ABZR86_RS01515 0.31 -1.8
329,708 + ABZR86_RS01515 0.31 -0.8
329,708 + ABZR86_RS01515 0.31 +0.1
329,708 + ABZR86_RS01515 0.31 +0.4
329,709 - ABZR86_RS01515 0.31 +0.6
329,828 + ABZR86_RS01515 0.44 -0.8
329,829 - ABZR86_RS01515 0.44 +0.1
329,829 - ABZR86_RS01515 0.44 -0.2
329,829 - ABZR86_RS01515 0.44 -0.2
329,829 - ABZR86_RS01515 0.44 -0.0
329,831 + ABZR86_RS01515 0.44 +0.0
329,832 - ABZR86_RS01515 0.44 -0.4
330,041 + ABZR86_RS01515 0.66 -0.1
330,042 - ABZR86_RS01515 0.66 -3.1
330,042 - ABZR86_RS01515 0.66 +0.4
330,045 + ABZR86_RS01515 0.66 +0.1
330,045 + ABZR86_RS01515 0.66 +1.0
330,046 - ABZR86_RS01515 0.66 +0.8
330,046 - ABZR86_RS01515 0.66 +0.4
330,046 - ABZR86_RS01515 0.66 +0.1
330,065 + ABZR86_RS01515 0.68 -0.0
330,066 - ABZR86_RS01515 0.68 +0.3
330,066 - ABZR86_RS01515 0.68 -0.2
330,068 + ABZR86_RS01515 0.68 -0.1
330,068 + ABZR86_RS01515 0.68 -0.2
330,096 - ABZR86_RS01515 0.71 +0.1
330,128 + ABZR86_RS01515 0.74 +0.9
330,129 - ABZR86_RS01515 0.75 +0.7
330,205 - ABZR86_RS01515 0.82 +0.2
330,205 - ABZR86_RS01515 0.82 +0.1
330,317 + -1.0
330,449 + -0.2
330,449 + +0.6
330,449 + -0.0
330,450 - +0.5
330,450 - -0.6
330,450 - +0.3
330,450 - -0.3
330,450 - +0.2
330,522 + +1.0
330,522 + -0.1
330,522 + -0.3
330,523 - -0.0
330,679 + +0.1
330,679 + +0.1
330,679 + +0.4
330,726 - -0.2
330,798 + -0.0
330,798 + +0.0
330,798 + +0.7
330,799 - -0.1
330,823 - +0.1
330,823 - +0.0
330,823 - -0.2
330,836 + +0.4
330,885 - -0.1
330,916 + -1.1
330,916 + +0.2
330,916 + -0.4
330,917 - -0.0
330,917 - +0.6
330,917 - +0.9
330,917 - +1.1
330,945 - +0.6
330,971 + -0.5
330,971 + +0.8
330,972 - +0.3
331,165 - -0.0
331,367 + ABZR86_RS01520 0.17 -0.1
331,368 - ABZR86_RS01520 0.17 -0.0
331,368 - ABZR86_RS01520 0.17 +0.1

Or see this region's nucleotide sequence