Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01080

Experiment: D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01070 and ABZR86_RS01075 are separated by 411 nucleotidesABZR86_RS01075 and ABZR86_RS01080 are separated by 70 nucleotidesABZR86_RS01080 and ABZR86_RS01085 are separated by 77 nucleotidesABZR86_RS01085 and ABZR86_RS01090 are separated by 198 nucleotides ABZR86_RS01070: ABZR86_RS01070 - response regulator transcription factor, at 213,580 to 214,200 _RS01070 ABZR86_RS01075: ABZR86_RS01075 - hypothetical protein, at 214,612 to 214,956 _RS01075 ABZR86_RS01080: ABZR86_RS01080 - hypothetical protein, at 215,027 to 215,227 _RS01080 ABZR86_RS01085: ABZR86_RS01085 - GlsB/YeaQ/YmgE family stress response membrane protein, at 215,305 to 215,556 _RS01085 ABZR86_RS01090: ABZR86_RS01090 - enoyl-ACP reductase FabV, at 215,755 to 216,954 _RS01090 Position (kb) 215 216Strain fitness (log2 ratio) -2 -1 0 1at 214.131 kb on + strand, within ABZR86_RS01070at 214.132 kb on - strand, within ABZR86_RS01070at 214.174 kb on + strandat 214.198 kb on + strandat 214.198 kb on + strandat 214.199 kb on - strandat 214.199 kb on - strandat 214.268 kb on + strandat 214.289 kb on + strandat 214.290 kb on - strandat 214.290 kb on - strandat 214.584 kb on + strandat 214.584 kb on + strandat 214.584 kb on + strandat 214.584 kb on + strandat 214.584 kb on + strandat 214.584 kb on + strandat 214.585 kb on - strandat 214.585 kb on - strandat 214.585 kb on - strandat 214.585 kb on - strandat 214.585 kb on - strandat 214.952 kb on - strandat 215.028 kb on + strandat 215.028 kb on + strandat 215.029 kb on - strandat 215.050 kb on + strand, within ABZR86_RS01080at 215.051 kb on - strand, within ABZR86_RS01080at 215.051 kb on - strand, within ABZR86_RS01080at 215.591 kb on + strandat 215.591 kb on + strandat 215.592 kb on - strandat 215.621 kb on + strandat 215.621 kb on + strandat 215.621 kb on + strandat 215.621 kb on + strandat 215.621 kb on + strandat 215.622 kb on - strandat 215.622 kb on - strandat 215.622 kb on - strandat 215.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
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214,131 + ABZR86_RS01070 0.89 -0.4
214,132 - ABZR86_RS01070 0.89 -1.9
214,174 + +0.7
214,198 + +1.3
214,198 + -1.1
214,199 - +0.1
214,199 - -0.2
214,268 + +1.3
214,289 + +0.0
214,290 - -0.1
214,290 - -0.4
214,584 + -0.8
214,584 + +0.5
214,584 + -0.5
214,584 + +0.8
214,584 + -0.5
214,584 + -1.0
214,585 - -0.4
214,585 - -0.9
214,585 - +0.1
214,585 - -0.3
214,585 - -0.8
214,952 - +0.3
215,028 + -0.7
215,028 + -1.5
215,029 - +1.1
215,050 + ABZR86_RS01080 0.11 +0.5
215,051 - ABZR86_RS01080 0.12 -0.1
215,051 - ABZR86_RS01080 0.12 -0.3
215,591 + +0.8
215,591 + +0.1
215,592 - -0.9
215,621 + +0.1
215,621 + -0.5
215,621 + -0.3
215,621 + +0.3
215,621 + -0.1
215,622 - +0.4
215,622 - +0.5
215,622 - +0.2
215,622 - +0.3

Or see this region's nucleotide sequence