Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2568

Experiment: MoYLS4 with Cephalothin 1.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2567 and DvMF_2568 are separated by 97 nucleotidesDvMF_2568 and DvMF_2569 are separated by 661 nucleotides DvMF_2567: DvMF_2567 - phosphate ABC transporter, inner membrane subunit PstA (RefSeq), at 3,244,529 to 3,245,698 _2567 DvMF_2568: DvMF_2568 - filamentation induced by cAMP protein Fic (RefSeq), at 3,245,796 to 3,247,028 _2568 DvMF_2569: DvMF_2569 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 3,247,690 to 3,248,673 _2569 Position (kb) 3245 3246 3247 3248Strain fitness (log2 ratio) -1 0 1at 3244.834 kb on + strand, within DvMF_2567at 3244.869 kb on + strand, within DvMF_2567at 3244.909 kb on + strand, within DvMF_2567at 3244.941 kb on - strand, within DvMF_2567at 3244.970 kb on + strand, within DvMF_2567at 3245.001 kb on + strand, within DvMF_2567at 3245.268 kb on + strand, within DvMF_2567at 3245.460 kb on - strand, within DvMF_2567at 3245.653 kb on + strandat 3245.791 kb on + strandat 3245.855 kb on + strandat 3245.855 kb on + strandat 3245.878 kb on - strandat 3245.915 kb on - strandat 3245.977 kb on - strand, within DvMF_2568at 3246.247 kb on + strand, within DvMF_2568at 3246.516 kb on + strand, within DvMF_2568at 3246.630 kb on - strand, within DvMF_2568at 3246.716 kb on + strand, within DvMF_2568at 3246.972 kb on + strandat 3246.991 kb on + strandat 3247.361 kb on + strandat 3247.708 kb on + strandat 3247.840 kb on + strand, within DvMF_2569at 3247.959 kb on + strand, within DvMF_2569at 3248.023 kb on + strand, within DvMF_2569

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cephalothin 1.25 mg/ml
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3,244,834 + DvMF_2567 0.26 -0.5
3,244,869 + DvMF_2567 0.29 -0.5
3,244,909 + DvMF_2567 0.32 -0.4
3,244,941 - DvMF_2567 0.35 -0.7
3,244,970 + DvMF_2567 0.38 -0.2
3,245,001 + DvMF_2567 0.40 -0.1
3,245,268 + DvMF_2567 0.63 +0.4
3,245,460 - DvMF_2567 0.80 -0.7
3,245,653 + +0.0
3,245,791 + -0.7
3,245,855 + -0.3
3,245,855 + -0.2
3,245,878 - -0.0
3,245,915 - -0.2
3,245,977 - DvMF_2568 0.15 +0.5
3,246,247 + DvMF_2568 0.37 +0.3
3,246,516 + DvMF_2568 0.58 -0.0
3,246,630 - DvMF_2568 0.68 -0.7
3,246,716 + DvMF_2568 0.75 -0.0
3,246,972 + +0.2
3,246,991 + -0.4
3,247,361 + +0.6
3,247,708 + -0.1
3,247,840 + DvMF_2569 0.15 -0.4
3,247,959 + DvMF_2569 0.27 -0.1
3,248,023 + DvMF_2569 0.34 +0.0

Or see this region's nucleotide sequence