Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2478

Experiment: MoYLS4 with Cephalothin 1.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2477 and DvMF_2478 overlap by 1 nucleotidesDvMF_2478 and DvMF_2479 are separated by 288 nucleotides DvMF_2477: DvMF_2477 - ABC transporter related (RefSeq), at 3,124,011 to 3,124,793 _2477 DvMF_2478: DvMF_2478 - molybdate ABC transporter, inner membrane subunit (RefSeq), at 3,124,793 to 3,125,500 _2478 DvMF_2479: DvMF_2479 - beta-lactamase domain protein (RefSeq), at 3,125,789 to 3,126,997 _2479 Position (kb) 3124 3125 3126Strain fitness (log2 ratio) -1 0 1at 3124.024 kb on + strandat 3124.032 kb on - strandat 3124.271 kb on + strand, within DvMF_2477at 3124.437 kb on - strand, within DvMF_2477at 3124.529 kb on - strand, within DvMF_2477at 3124.688 kb on + strand, within DvMF_2477at 3124.854 kb on + strandat 3124.942 kb on + strand, within DvMF_2478at 3124.952 kb on - strand, within DvMF_2478at 3124.976 kb on + strand, within DvMF_2478at 3125.353 kb on - strand, within DvMF_2478at 3125.446 kb on + strandat 3125.770 kb on + strandat 3125.834 kb on - strandat 3126.056 kb on - strand, within DvMF_2479at 3126.069 kb on + strand, within DvMF_2479at 3126.124 kb on - strand, within DvMF_2479at 3126.182 kb on + strand, within DvMF_2479at 3126.226 kb on + strand, within DvMF_2479

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cephalothin 1.25 mg/ml
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3,124,024 + -0.3
3,124,032 - -0.1
3,124,271 + DvMF_2477 0.33 +0.1
3,124,437 - DvMF_2477 0.54 -0.0
3,124,529 - DvMF_2477 0.66 -0.6
3,124,688 + DvMF_2477 0.86 +0.0
3,124,854 + -0.9
3,124,942 + DvMF_2478 0.21 -0.3
3,124,952 - DvMF_2478 0.22 +0.2
3,124,976 + DvMF_2478 0.26 +0.4
3,125,353 - DvMF_2478 0.79 -0.2
3,125,446 + -0.3
3,125,770 + -0.3
3,125,834 - -0.4
3,126,056 - DvMF_2479 0.22 -0.0
3,126,069 + DvMF_2479 0.23 -0.6
3,126,124 - DvMF_2479 0.28 +0.1
3,126,182 + DvMF_2479 0.33 -0.2
3,126,226 + DvMF_2479 0.36 -0.3

Or see this region's nucleotide sequence