Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2387

Experiment: MoYLS4 with Cephalothin 1.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2386 and DvMF_2387 are separated by 704 nucleotidesDvMF_2387 and DvMF_2388 overlap by 37 nucleotides DvMF_2386: DvMF_2386 - cytochrome c nitrite reductase small subunit (RefSeq), at 3,015,682 to 3,016,158 _2386 DvMF_2387: DvMF_2387 - glutamate synthase (NADPH) (RefSeq), at 3,016,863 to 3,017,990 _2387 DvMF_2388: DvMF_2388 - ferredoxin-dependent glutamate synthase (RefSeq), at 3,017,954 to 3,019,588 _2388 Position (kb) 3016 3017 3018Strain fitness (log2 ratio) -1 0 1at 3015.893 kb on - strand, within DvMF_2386at 3016.052 kb on - strand, within DvMF_2386at 3016.063 kb on - strand, within DvMF_2386at 3016.063 kb on - strand, within DvMF_2386at 3016.293 kb on - strandat 3016.591 kb on + strandat 3017.085 kb on - strand, within DvMF_2387at 3017.299 kb on + strand, within DvMF_2387at 3017.335 kb on + strand, within DvMF_2387at 3017.638 kb on - strand, within DvMF_2387at 3017.839 kb on + strand, within DvMF_2387at 3017.894 kb on + strandat 3017.927 kb on - strandat 3017.979 kb on + strandat 3018.033 kb on + strandat 3018.052 kb on + strandat 3018.097 kb on - strandat 3018.118 kb on - strand, within DvMF_2388at 3018.234 kb on - strand, within DvMF_2388at 3018.358 kb on + strand, within DvMF_2388at 3018.442 kb on - strand, within DvMF_2388at 3018.598 kb on - strand, within DvMF_2388at 3018.610 kb on + strand, within DvMF_2388at 3018.886 kb on - strand, within DvMF_2388

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cephalothin 1.25 mg/ml
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3,015,893 - DvMF_2386 0.44 -0.3
3,016,052 - DvMF_2386 0.78 -0.3
3,016,063 - DvMF_2386 0.80 -0.5
3,016,063 - DvMF_2386 0.80 -0.3
3,016,293 - -0.3
3,016,591 + -0.4
3,017,085 - DvMF_2387 0.20 -0.4
3,017,299 + DvMF_2387 0.39 -0.6
3,017,335 + DvMF_2387 0.42 +0.2
3,017,638 - DvMF_2387 0.69 -0.1
3,017,839 + DvMF_2387 0.87 +0.5
3,017,894 + -0.5
3,017,927 - -0.2
3,017,979 + -0.3
3,018,033 + +0.3
3,018,052 + +0.1
3,018,097 - -0.2
3,018,118 - DvMF_2388 0.10 +0.3
3,018,234 - DvMF_2388 0.17 -0.4
3,018,358 + DvMF_2388 0.25 +0.1
3,018,442 - DvMF_2388 0.30 +0.3
3,018,598 - DvMF_2388 0.39 -0.6
3,018,610 + DvMF_2388 0.40 +0.3
3,018,886 - DvMF_2388 0.57 -0.4

Or see this region's nucleotide sequence