Experiment: MoYLS4 with Cephalothin 1.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2349 and DvMF_2350 are separated by 217 nucleotides DvMF_2350 and DvMF_2351 are separated by 254 nucleotides
DvMF_2349: DvMF_2349 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,959,196 to 2,960,041
_2349
DvMF_2350: DvMF_2350 - diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq), at 2,960,259 to 2,963,261
_2350
DvMF_2351: DvMF_2351 - aminodeoxychorismate lyase (RefSeq), at 2,963,516 to 2,965,378
_2351
Position (kb)
2960
2961
2962
2963
2964 Strain fitness (log2 ratio)
-1
0
1 at 2959.430 kb on + strand, within DvMF_2349 at 2959.438 kb on - strand, within DvMF_2349 at 2959.478 kb on - strand, within DvMF_2349 at 2959.478 kb on - strand, within DvMF_2349 at 2959.531 kb on - strand, within DvMF_2349 at 2959.907 kb on - strand, within DvMF_2349 at 2960.012 kb on - strand at 2960.034 kb on + strand at 2960.233 kb on + strand at 2960.390 kb on + strand at 2960.695 kb on + strand, within DvMF_2350 at 2960.935 kb on + strand, within DvMF_2350 at 2961.038 kb on + strand, within DvMF_2350 at 2961.333 kb on - strand, within DvMF_2350 at 2961.353 kb on + strand, within DvMF_2350 at 2961.429 kb on + strand, within DvMF_2350 at 2961.599 kb on - strand, within DvMF_2350 at 2961.665 kb on + strand, within DvMF_2350 at 2961.911 kb on + strand, within DvMF_2350 at 2962.306 kb on - strand, within DvMF_2350 at 2962.343 kb on - strand, within DvMF_2350 at 2962.557 kb on - strand, within DvMF_2350 at 2962.640 kb on + strand, within DvMF_2350 at 2962.686 kb on + strand, within DvMF_2350 at 2962.708 kb on - strand, within DvMF_2350 at 2962.709 kb on - strand, within DvMF_2350 at 2962.818 kb on - strand, within DvMF_2350 at 2962.887 kb on + strand, within DvMF_2350 at 2962.893 kb on - strand, within DvMF_2350 at 2962.905 kb on + strand, within DvMF_2350 at 2964.003 kb on + strand, within DvMF_2351
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cephalothin 1.25 mg/ml remove 2,959,430 + DvMF_2349 0.28 -0.0 2,959,438 - DvMF_2349 0.29 -0.9 2,959,478 - DvMF_2349 0.33 -0.4 2,959,478 - DvMF_2349 0.33 +0.3 2,959,531 - DvMF_2349 0.40 -0.6 2,959,907 - DvMF_2349 0.84 -0.1 2,960,012 - -0.8 2,960,034 + -0.3 2,960,233 + -0.4 2,960,390 + -0.2 2,960,695 + DvMF_2350 0.15 -0.2 2,960,935 + DvMF_2350 0.23 -0.7 2,961,038 + DvMF_2350 0.26 -0.2 2,961,333 - DvMF_2350 0.36 +0.4 2,961,353 + DvMF_2350 0.36 -0.1 2,961,429 + DvMF_2350 0.39 -0.5 2,961,599 - DvMF_2350 0.45 +0.1 2,961,665 + DvMF_2350 0.47 -0.1 2,961,911 + DvMF_2350 0.55 -0.3 2,962,306 - DvMF_2350 0.68 -0.7 2,962,343 - DvMF_2350 0.69 -0.7 2,962,557 - DvMF_2350 0.77 +0.1 2,962,640 + DvMF_2350 0.79 -0.2 2,962,686 + DvMF_2350 0.81 +0.1 2,962,708 - DvMF_2350 0.82 -0.0 2,962,709 - DvMF_2350 0.82 -0.9 2,962,818 - DvMF_2350 0.85 +0.2 2,962,887 + DvMF_2350 0.88 -0.8 2,962,893 - DvMF_2350 0.88 -0.4 2,962,905 + DvMF_2350 0.88 -0.2 2,964,003 + DvMF_2351 0.26 -0.6
Or see this region's nucleotide sequence